[Blends-commit] r3513 - /projects/med/trunk/debian-med/tasks/bio
moeller at users.alioth.debian.org
moeller at users.alioth.debian.org
Thu Jul 19 14:34:39 UTC 2012
Author: moeller
Date: Thu Jul 19 14:34:39 2012
New Revision: 3513
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3513
Log:
Removed redundancy for pftools in task file.
Modified:
projects/med/trunk/debian-med/tasks/bio
Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3513&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Jul 19 14:34:39 2012
@@ -572,11 +572,20 @@
Depends: pftools
Homepage: ftp://us.expasy.org/databases/prosite/tools/ps_scan/sources
License: GPL
-Pkg-Description: tools to handle patterns from PROSITE
+Pkg-Description: tools to handle profiles of protein domains from PROSITE
+ The 'pftools' package is a collection of experimental programs
+ supporting the generalized profile format and search method of
+ PROSITE.
+ .
ps_scan is a perl program used to scan one or several patterns, rules
and/or profiles from PROSITE against one or several protein sequences
in Swiss-Prot or FASTA format. It requires two compiled external
programs from the PFTOOLS, which are also distributed with the sources.
+ .
+ Also seen on http://www.isrec.isb-sib.ch/profile/profile.html
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
Depends: phylographer
Homepage: http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html
@@ -1873,17 +1882,6 @@
structure and statistical analysis.
Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
-Depends: pftools
-Homepage: http://www.isrec.isb-sib.ch/profile/profile.html
-License: not specified
-Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: handle profiles of protein domains
- The 'pftools' package is a collection of experimental programs
- supporting the generalized profile format and search method of
- PROSITE.
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
-
Comment: priam
BioLinux contains a priam package which is available at
http://bioinfo.genotoul.fr/priam/REL_JUL06/index_jul06.html but this
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