[Blends-commit] r3391 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Tue Jun  5 16:41:58 2012
New Revision: 3391

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3391
Log:
Deactivate Dependency from obviosely orphaned treevolve

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3391&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Jun  5 16:41:58 2012
@@ -415,6 +415,10 @@
 
 Depends: treeview
 X-Category: Visualisation
+
+X-Depends: treevolve
+X-Comment: Homepage of software vanished, packaging in SVN is obviosely stalled
+ Feel free to delete the 'X-' in front if you intend to do something on this package
 
 X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here
 
@@ -467,28 +471,6 @@
  .
  The use of tacg may be cited as: Mangalam, HJ. (2002) tacg, a grep for DNA.
  BMC Bioinformatics. 3:8  http://www.biomedcentral.com/1471-2105/3/8
-
-Depends: treevolve
-Homepage: http://evolve.zoo.ox.ac.uk/software.html?id=Treevolve
-Responsible: Charles Plessy <plessy at debian.org>
-License: has to be verified
-WNPP: 461510
-Pkg-URL: http://www-id.imag.fr/Laboratoire/Membres/Danjean_Vincent/deb.html#treevolve
-Pkg-Description: simulation of evolution of DNA sequences
- treevolve will simulate the evolution of DNA sequences under a
- coalescent model, which allows exponential population growth,
- population subdivision according to an island model, migration and
- recombination. In addition different periods of population dynamics
- can be enforced at different times. For example, a period of
- exponential growth can be followed by a period of stasis where the
- population is subdivided into demes. Multiple sets of such simulated
- sequence data can then be compared to sequence data sampled from a
- population of interest using suitable statistics, and various
- evolutionary hypotheses concerning the evolution of this population
- tested.
- .
- Citation: Population dynamics of HIV-1 inferred from gene sequences
- Grassly NC, Harvey PH & Holmes EC (1999) Genetics 151, 427-438.
 
 Depends: asap
 Homepage: http://asap.ahabs.wisc.edu/software/asap/