[Blends-commit] r3392 - /projects/med/trunk/debian-med/tasks/bio

Tue Jun 5 16:56:29 UTC 2012

Author: tille
Date: Tue Jun  5 16:56:29 2012
New Revision: 3392

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3392
Log:
Remove extra information about wgs-assembler which is also in SVN

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3392&op=diff
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Jun  5 16:56:29 2012
@@ -419,6 +419,9 @@
 X-Depends: treevolve
 X-Comment: Homepage of software vanished, packaging in SVN is obviosely stalled
  Feel free to delete the 'X-' in front if you intend to do something on this package
+
+Depends: wgs-assembler
+Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
 
 X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here
 
@@ -702,52 +705,6 @@
  .
  Probably it makes sense to remove this project from the prospective packages
  list.
-
-Depends: wgs-assembler
-Homepage: http://wgs-assembler.sourceforge.net/
-Responsible: Charles Plessy <plessy at debian.org>
-WNPP: 395843
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/wgs-assembler/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/wgs-assembler/trunk/
-License: GPL
-Pkg-Description: Whole-Genome Shotgun Assembler
- Celera Assembler is scientific software for DNA research. It can
- reconstruct long sequences of genomic DNA given the fragmentary data
- produced by whole-genome shotgun sequencing. The Celera Assembler
- enabled many advances in genomics, including the first genome
- sequence of a multi-cellular organism and the first diploid sequence
- of an individual human.
- .
- The Celera Assembler is a member of a class of software called
- whole-genome shotgun assemblers. The Celera Assembler is mature,
- efficient, open-source software with a long record of contributions
- to science. Celera Assembler is written mostly in C for unix
- operating systems. Although it requires large compute resources to
- resolve complex genomes, it can assemble bacterial genomes on a
- laptop.
- .
- This important software is an "open source" project. Originally
- developed at Celera Genomics, it was released under the GNU Public
- License and deposited on a public repository (Source Forge) in
- 2004. Scientists around the world can download, build, and run the
- software without restriction. In addition, they can inspect the
- source code and alter it at their own sites. Workers at JCVI and a
- few other institutes regularly submit their code alterations to the
- public repository.
- .
- JCVI has made many important contributions to Celera
- Assembler. Scientists and engineers at JCVI are extending the code to
- handle more and more polymorphic data sets, including environmental
- samples. In collaboration with scientists at the University of
- Maryland, they are adding the capability to assemble pyrosequencing
- data (as from a 454 FLX machine) in addition to the traditional
- Sanger sequencing data (as from an ABI 3730 machine). JCVI's efforts
- provide the cutting edge software that genome scientists around the
- world will need as they apply DNA sequencing technology to more and
- more difficult problems of biology.
- .
- See also: http://www.jcvi.org/cms/research/software/celera-assembler/overview/
-Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
 
 Depends: gbioseq
 Homepage: http://www.bioinformatics.org/project/?group_id=94


