[Blends-commit] r3393 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Tue Jun  5 17:14:23 2012
New Revision: 3393

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3393
Log:
Remove now redundant information about tacg

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3393&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Jun  5 17:14:23 2012
@@ -413,6 +413,10 @@
 License: GNU + some external components with different licenses
 Language: Java
 
+Depends: tacg
+X-Category: Motif detection
+X-Importance: powerful
+
 Depends: treeview
 X-Category: Visualisation
 
@@ -446,34 +450,6 @@
  macromolecules such as proteins, DNA and RNA. It provides a C++ interface
  for common tasks in structural biology to facilitate the development of
  molecular modeling, design and analysis tools.
-
-Depends: tacg
-Homepage: http://sourceforge.net/projects/tacg
-Responsible: Charles Plessy <plessy at debian.org>
-License: GPL and others
-WNPP: 461504
-X-Category: Motif detection
-X-Importance: powerful
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/tacg/trunk/
-Pkg-Description: command line program for finding patterns in nucleic acids
- tacg is a character-based, command line tool for unix-like operating systems
- for pattern-matching in nucleic acids and performing some of the basic protein
- manipulations. It was originally designed for restriction enzyme analysis of
- DNA, but has been extended to other types of matching. It now handles
- degenerate sequence input in a variety of matching approaches, as well as
- patterns with errors, regular expressions and TRANSFAC-formatted matrices.
- .
- It was designed to be a grep for DNA and like the original grep, its
- capabilities have grown so that now the author has to keep calling up the help
- page to figure out which flags (now ~50) mean what. tacg is NOT a GUI
- application in any sense. However, it's existance as a strictly command-line
- tool lends itself well to Webification and wrapping by various GUI tools and
- it is now distributed with a web interface form and a Perl CGI handler.
- Additionally, it can easily be integrated into editors that support shell
- commands such as nedit.
- .
- The use of tacg may be cited as: Mangalam, HJ. (2002) tacg, a grep for DNA.
- BMC Bioinformatics. 3:8  http://www.biomedcentral.com/1471-2105/3/8
 
 Depends: asap
 Homepage: http://asap.ahabs.wisc.edu/software/asap/