[Blends-commit] r3437 - in /projects/med/tags: 1.0/debian/control 1.1/debian/control 1.2/debian/control
tille at users.alioth.debian.org
tille at users.alioth.debian.org
Sat Jun 23 12:50:58 UTC 2012
Author: tille
Date: Sat Jun 23 12:50:57 2012
New Revision: 3437
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3437
Log:
More historic control files to enable digging into development of package dependencies
Added:
projects/med/tags/1.0/debian/control
projects/med/tags/1.1/debian/control
projects/med/tags/1.2/debian/control
Added: projects/med/tags/1.0/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/tags/1.0/debian/control?rev=3437&op=file
==============================================================================
--- projects/med/tags/1.0/debian/control (added)
+++ projects/med/tags/1.0/debian/control Sat Jun 23 12:50:57 2012
@@ -1,0 +1,163 @@
+XS-Comment: This file is autogenerated via make -f debian/rules dist. Do not edit!
+Source: debian-med
+Section: misc
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 5)
+Build-Depends-Indep: cdd-dev (>= 0.5.2)
+Standards-Version: 3.8.0
+Vcs-Browser: http://svn.debian.org/wsvn/cdd/projects/med/trunk/debian-med/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/cdd/projects/med/trunk/debian-med/
+
+Package: med-tasks
+Architecture: all
+Depends: tasksel (>= 2.07)
+Description: Debian Med tasks for tasksel
+ This package provides Debian Med tasks in tasksel.
+
+Package: med-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, cdd-common (>= 0.5.2)
+Conflicts: med-common
+Replaces: med-common
+Provides: med-common
+Description: Debian Med Project config package
+ This package provides the basic infrastructure of all med-* packages and is
+ needed by them.
+ .
+ This package provides some files which are common to all med-* packages.
+ Moreover it introduces a method to handle system users in a group
+ med using debconf.
+ .
+ Other packages in Debian Med Project are:
+ .
+ * med-bio for biological research
+ * med-bio-dev for developing applications in biological research
+ * med-cms for publicating a medical site on the internet
+ * med-epi for epidemiology
+ * med-imaging for image processing
+ * med-imaging-dev for developing applications for image processing
+ * med-pharmacy for pharmaceutical research
+ * med-physics for radiation oncology, diagnostic imaging, related fields
+ * med-practice for general practitioners
+ * med-tools contains miscellaneous tools
+ * med-typesetting depends from useful tools for typesetting
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get all the non-commercial medical software which is available
+ for Debian GNU/Linux.
+
+
+Package: med-bio
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: adun.app, altree, amap-align, autodock, autogrid, biosquid, blast2, boxshade, dialign, dialign-tx, emboss, exonerate, fastdnaml, fastlink, garlic, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer, kalign, loki, melting, mipe, mummer, muscle, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot, perlprimer, plasmidomics, poa, primer3, probcons, proda, pymol, r-cran-qtl, rasmol, readseq, seaview, sibsim4, sigma-align, sim4, t-coffee, tigr-glimmer, tree-puzzle | tree-ppuzzle, treeviewx, wise
+Suggests: agdbnet, amos-assembler, amoscmp, arb, asap, axparafit, axpcoords, ballview, bambus, biococoa.app, btk-core, cactus, clustalw, clustalw-mpi, clustalx, cluster3, contralign, copycat, cytoscape, dazzle, ecell, elph, emboss-kaptain, exalt, figaro, galaxy, gamgi, gbioseq, gbrowse, genesplicer, genetrack, genezilla, genographer, glimmerhmm, gmv, haploview, hawkeye, infernal, jigsaw, jmol, jtreeview, mage2tab, martj, mauvealigner, meme, mgltools, minimus, mira, mirbase, molekel, molphy, mozilla-biofox, mummergpu, murasaki, mustang, ncoils, ngila, operondb, patman, pdb2pqr, pftools, phpphylotree, phylip, phylographer, phylowin, plink, populations, proalign, pyrophosphate-tools, raxml, repeatfinder, reputer, rose, seq-gen, smile, ssaha, staden, tacg, tm-align, tracetuner, transtermhp, treeplot, treetool, treevolve, trnascan-se, twain, uniprime, velvet, vienna-rna, wgs-assembler
+Description: Debian Med micro-biology packages
+ This meta package will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences.
+
+Package: med-bio-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: bioperl, libajax5-dev, libbio-mage-perl, libbio-ruby, libgenome-1.3-1, libgo-perl, libncbi6-dev, libnucleus5-dev, libqsearch-dev, libvibrant6-dev, mcl, python-biopython
+Suggests: aceperl, bioclipse, bioconductor, biomode, libbio-das-perl, libbio-mage-utils-perl, libbiojava-java, libgff-perl, libmems-1.5-1, libtfbs-perl, limma, r-base-core, seqan
+Description: Debian Med packages for development of micro-biology applications
+ This meta package will install Debian packages which might be helpful
+ for development of applications for micro-biological research.
+
+Package: med-cms
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Suggests: zope-zms
+Description: Debian Med content management systems
+ This meta package will install packages which are useful to build a
+ content management system for medical care.
+
+Package: med-epi
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: epigrass
+Suggests: netepi-analysis, netepi-collection
+Description: Debian Med epidemiology related packages
+ This meta package will install tools that are useful in epidemiological
+ research.
+
+Package: med-imaging
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, amide, ctn, dcmtk, dicomnifti, fslview, gwyddion, libvolpack1, medcon, minc-tools, nifti-bin, python-nifti, xmedcon
+Suggests: afni, bioimagesuite, blox, brainvisa, caret, conquest-dicom-server, ctsim, dcm4che, dicom3tools, dicom4j, dicomscope, drjekyll, ecg2png, fsl, gdcm, imagej, imagemagick, imview, kradview, libvista2, lipsia, maris, mesa-test-tools, mni-autoreg, mni-n3, opendicom.net, opensourcepacs, piano, pixelmed, pixelmed-dicom-toolkit, pngquant, slicer, sofa, visit
+Description: Debian Med imaging packages
+ This meta package will install Debian packages which might be useful in medical
+ image processing.
+ .
+ It installs several packages supporting DICOM (Digital Imaging and
+ Communications in Medicine) which is the de-facto standard for medical
+ image management. The standard defines data structures and services for
+ the exchange of medical images and related information. The latest release
+ has been published in 2004 and consists of 18 parts.
+ .
+ For more information, you can visit the NEMA homepage http://medical.nema.org/
+ or download the current DICOM standard as PDF files from
+ http://www.dclunie.com/dicom-status/status.html .
+
+Package: med-imaging-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cimg-dev, ctn-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti1-dev, libvolpack1-dev
+Suggests: igstk, insighttoolkit3-examples, libmni-perllib-perl, libnifti-doc, libvista2-dev, libvtk5, nipy, odin, rumba
+Description: Debian Med packages for medical image development
+ This meta package will install Debian packages which might be useful
+ for developing applications for medical image processing.
+
+Package: med-pharmacy
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: chemtool
+Description: Debian Med packages for pharmaceutical research
+ This meta package contains dependencies for a
+ collection of software and documentation which is useful for
+ pharmaceutical research.
+
+Package: med-physics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: octave3.0, paw, paw++, r-base | r-base-core
+Suggests: paw-demos
+Description: Debian Med packages for medical physicists
+ This meta package contains dependencies for a
+ collection of software and documentation which is useful for
+ medical physicists in radiation oncology, diagnostics imaging
+ and related fields.
+
+Package: med-practice
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: gnumed-client, libchipcardc2, libchipcardd0
+Suggests: gnumed-server, mirth, tinyheb
+Description: Debian Med packages for practice management
+ This meta package contains dependencies for a collection of software
+ which might be helpful for practitioners to manage their practice.
+
+Package: med-tools
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cycle, hunspell-de-med, mencal, pondus, wgerman-medical
+Suggests: cl-pubmed, mssstest
+Description: Debian Med several tools
+ This meta package will install tools for several purposes in health care.
+ Currently it contains some simple programs for Personal Health.
+
+Package: med-typesetting
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: texlive-latex-extra, texlive-science
+Description: Debian Med support for typesetting and publishing
+ This meta package will install Debian packages that might be helpful
+ for typesetting and publishing in medical care and structural
+ biology.
+
Added: projects/med/tags/1.1/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/tags/1.1/debian/control?rev=3437&op=file
==============================================================================
--- projects/med/tags/1.1/debian/control (added)
+++ projects/med/tags/1.1/debian/control Sat Jun 23 12:50:57 2012
@@ -1,0 +1,175 @@
+XS-Comment: This file is autogenerated via make -f debian/rules dist. Do not edit!
+Source: debian-med
+Section: misc
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 5)
+Build-Depends-Indep: blends-dev (>= 0.6.1)
+Standards-Version: 3.8.0
+Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/blends/projects/med/trunk/debian-med/
+
+Package: med-tasks
+Architecture: all
+Depends: tasksel
+Description: Debian Med tasks for tasksel
+ This package provides Debian Med tasks in tasksel.
+ .
+ These tasks are described in detail at
+ http://debian-med.alioth.debian.org/tasks/
+
+Package: med-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.0)
+Conflicts: med-common
+Replaces: med-common
+Provides: med-common
+Description: Debian Med Project config package
+ This package provides the basic infrastructure of all med-* packages and is
+ needed by them.
+ .
+ This package provides some files which are common to all med-* packages.
+ Moreover it introduces a method to handle system users in a group
+ med using debconf.
+ .
+ Other packages in Debian Med Project are:
+ .
+ * med-bio for biological research
+ * med-bio-dev for developing applications in biological research
+ * med-cms for publicating a medical site on the internet
+ * med-epi for epidemiology
+ * med-imaging for image processing
+ * med-imaging-dev for developing applications for image processing
+ * med-pharmacy for pharmaceutical research
+ * med-physics for radiation oncology, diagnostic imaging, related fields
+ * med-practice for general practitioners
+ * med-tools contains miscellaneous tools
+ * med-typesetting depends from useful tools for typesetting
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get all the non-commercial medical software which is available
+ for Debian GNU/Linux.
+
+
+Package: med-bio
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: adun.app, altree, amap-align, autodock, autogrid, biosquid, blast2, boxshade, dialign, dialign-tx, embassy-domainatrix, embassy-domalign, emboss, exonerate, fastdnaml, fastlink, garlic, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer, kalign, last-align, loki, mafft, maq, melting, mipe, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot, perlprimer, plasmidomics, plink, poa, primer3, probcons, proda, pymol, r-cran-qtl, r-other-bio3d, rasmol, readseq, rnahybrid, seaview, sibsim4, sigma-align, sim4, t-coffee, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, treeviewx, wise
+Suggests: acedb, act, agdbnet, alien-hunter, amos-assembler, amoscmp, arb, artemis, asap, autodocktools, axparafit, axpcoords, ballview, bambus, beast-mcmc, big-blast, bio-mauve, biococoa.app, blixem, btk-core, cactus, caftools, cap3, cd-hit, cdna-db, clustalw, clustalw-mpi, clustalx, cluster3, coalesce, contralign, coot, copycat, cytoscape, das-proserver, dazzle, decipher, dotter, dotur, ecell, elph, emboss-explorer, emboss-kaptain, est-db, estferret, estscan, exalt, fasta, figaro, finex, fluctuate, forester, galaxy, gamgi, gbioseq, gbrowse, genesplicer, genetrack, genezilla, genographer, glimmerhmm, gmv, haploview, hawkeye, hexamer, infernal, jalview, jigsaw, jmol, jtreeview, lamarc, logomat-m, lucy, mage2tab, martj, mauvealigner, maxd, meme, mesquite, mgltools-bhtree, mgltools-dejavu, mgltools-geomutils, mgltools-opengltk, mgltools-pmv, mgltools-pyglf, mgltools-sff, mgltools-utpackages, mgltools-vision, mgltools-volume, migrate, minimus, mira, mirbase, molekel, molphy, mozilla-biofox, mrbayes, msatfinder, mummergpu, murasaki, mview, ncoils, ngila, oligoarrayaux, omegamap, operondb, paml, partigene, patman, pdb2pqr, pfaat, pftools, phpphylotree, phylip, phylographer, phylowin, phyml, populations, prank, proalign, prot4est, pyrophosphate-tools, qtlcart, r-ape, r-happy, r-other-genabel, raster3d, raxml, rbs-finder, recombine, repeatfinder, reputer, roche454ace2caf, rose, seq-gen, smile, spice, splitstree, srf, ssaha, ssake, staden, tacg, taverna, taxinspector, tetra, tm-align, trace2dbest, tracetuner, transtermhp, treeplot, treetool, treevolve, trnascan-se, twain, uniprime, velvet, vienna-rna, wgs-assembler
+Description: Debian Med micro-biology packages
+ This metapackage will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences.
+
+Package: med-bio-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: bioperl, bioperl-run, libajax5-dev, libbio-mage-perl, libbio-ruby, libgenome-1.3-0-dev, libgo-perl, libncbi6-dev, libnucleus5-dev, libqsearch-dev, libtfbs-perl, libvibrant6-dev, mcl, octave-bioinfo, python-biopython, r-cran-genetics, r-cran-haplo.stats
+Suggests: aceperl, bioclipse, bioconductor, biomode, libbio-das-perl, libbio-graphics-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbiojava-java, libgff-perl, libmems-1.5-1, libsbml1, limma, r-base-core, r-cran-rocr, seqan
+Description: Debian Med packages for development of micro-biology applications
+ This metapackage will install Debian packages which might be helpful
+ for development of applications for micro-biological research.
+
+Package: med-cms
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Suggests: zope-zms
+Description: Debian Med content management systems
+ This metapackage will install packages which are useful to build a
+ content management system for medical care.
+
+Package: med-epi
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: epigrass
+Suggests: netepi-analysis, netepi-collection, r-cran-epi, r-cran-epitools, r-cran-surveillance
+Description: Debian Med epidemiology related packages
+ This metapackage will install tools that are useful in epidemiological
+ research. Several packages making use of the GNU R data language for
+ statistical investigation. It might be a good idea to read the paper
+ "A short introduction to R for Epidemiology" at
+ http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
+
+Package: med-imaging
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, amide, ctn, ctsim, dcmtk, dicomnifti, fslview, gwyddion, imagej, libvolpack1, medcon, minc-tools, nifti-bin, python-mvpa, python-nifti, sofa-apps, xmedcon
+Suggests: afni, bioimagesuite, blox, brainvisa, caret, conquest-dicom-server, dcm4che, devide, dicom3tools, dicom4j, dicomscope, drjekyll, ecg2png, fsl, gdcm, imagemagick, imview, kradview, libvista2, lipsia, maris, mesa-test-tools, micromanager, mni-autoreg, mni-n3, opendicom.net, opensourcepacs, piano, pixelmed, pixelmed-dicom-toolkit, pngquant, slicer, visit
+Description: Debian Med imaging packages
+ This metapackage will install Debian packages which might be useful in
+ medical image processing.
+ .
+ It installs several packages supporting DICOM (Digital Imaging and
+ Communications in Medicine) which is the de-facto standard for medical
+ image management. The standard defines data structures and services for
+ the exchange of medical images and related information. The latest release
+ has been published in 2008 and consists of 18 parts.
+ .
+ For more information, you can visit the NEMA homepage
+ http://medical.nema.org/ .
+ .
+ The status of the official DICOM base standard plus all the
+ supplements and correction items are summarized at David Clunie's webpage:
+ http://www.dclunie.com/dicom-status/status.html
+ where you'll find direct links to the most recent yearly edition
+ ftp://medical.nema.org/medical/dicom/2008/ .
+
+Package: med-imaging-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cimg-dev, ctn-dev, libigstk3-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti1-dev, libvolpack1-dev, python-mvpa
+Suggests: igstk-examples, insighttoolkit3-examples, libmni-perllib-perl, libnifti-doc, libvista2-dev, libvtk5, nipy, odin, python-libavg, rumba
+Description: Debian Med packages for medical image development
+ This metapackage will install Debian packages which might be useful
+ for developing applications for medical image processing.
+
+Package: med-pharmacy
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: chemtool
+Description: Debian Med packages for pharmaceutical research
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ pharmaceutical research.
+
+Package: med-physics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: octave3.0, paw, paw++, r-base | r-base-core
+Suggests: biosig, gate, paw-demos
+Description: Debian Med packages for medical physicists
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ medical physicists in radiation oncology, diagnostics imaging
+ and related fields.
+
+Package: med-practice
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, gnumed-client, libchipcardc2, libchipcardd0
+Suggests: elexis, gnumed-server, mirrormed, mirth, tinyheb
+Description: Debian Med packages for practice management
+ This metapackage contains dependencies for a collection of software
+ which might be helpful for practitioners to manage their practice.
+
+Package: med-tools
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cycle, hunspell-de-med, mencal, pondus, wgerman-medical
+Suggests: cl-pubmed, hunspell-en-med, linuxorg-pcal, mssstest
+Description: Debian Med several tools
+ This metapackage will install tools for several purposes in health care.
+ Currently it contains some simple programs for Personal Health.
+
+Package: med-typesetting
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: texlive-latex-extra, texlive-science
+Suggests: kbibtex
+Description: Debian Med support for typesetting and publishing
+ This metapackage will install Debian packages that might be helpful
+ for typesetting and publishing in medical care and structural
+ biology.
+
Added: projects/med/tags/1.2/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/tags/1.2/debian/control?rev=3437&op=file
==============================================================================
--- projects/med/tags/1.2/debian/control (added)
+++ projects/med/tags/1.2/debian/control Sat Jun 23 12:50:57 2012
@@ -1,0 +1,184 @@
+# This file is autogenerated via make -f debian/rules dist. Do not edit!
+Source: debian-med
+Section: misc
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 7)
+Build-Depends-Indep: blends-dev (>= 0.6.3)
+Standards-Version: 3.8.1
+Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/blends/projects/med/trunk/debian-med/
+
+Package: med-tasks
+Architecture: all
+Depends: tasksel
+Description: Debian Med tasks for tasksel
+ This package provides Debian Med tasks in tasksel.
+ .
+ These tasks are described in detail at
+ http://debian-med.alioth.debian.org/tasks/
+
+Package: med-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.0)
+Conflicts: med-common
+Replaces: med-common
+Provides: med-common
+Description: Debian Med Project config package
+ This package provides the basic infrastructure of all med-* packages and is
+ needed by them.
+ .
+ This package provides some files which are common to all med-* packages.
+ Moreover it introduces a method to handle system users in a group
+ med using debconf.
+ .
+ Other packages in Debian Med Project are:
+ .
+ * med-bio for biological research
+ * med-bio-dev for developing applications in biological research
+ * med-cms for publicating a medical site on the internet
+ * med-epi for epidemiology
+ * med-imaging for image processing
+ * med-imaging-dev for developing applications for image processing
+ * med-pharmacy for pharmaceutical research
+ * med-physics for radiation oncology, diagnostic imaging, related fields
+ * med-practice for general practitioners
+ * med-tools contains miscellaneous tools
+ * med-typesetting depends from useful tools for typesetting
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get all the non-commercial medical software which is available
+ for Debian GNU/Linux.
+
+
+Package: med-bio
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: adun.app, altree, amap-align, autodock, autogrid, biosquid, blast2, boxshade, dialign, dialign-tx, embassy-domainatrix, embassy-domalign, emboss, exonerate, fastdnaml, fastlink, gamgi, garlic, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer, kalign, last-align, loki, mafft, melting, mipe, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot, perlprimer, plasmidomics, poa, primer3, probcons, proda, pymol, r-cran-qtl, r-other-bio3d, rasmol, readseq, rnahybrid, seaview, sibsim4, sigma-align, sim4, ssake, t-coffee, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, treeviewx, velvet, wise
+Suggests: acedb, act, agdbnet, alien-hunter, amos-assembler, amoscmp, arb, artemis, asap, autodocktools, axparafit, axpcoords, ballview, bambus, beast-mcmc, big-blast, bio-mauve, blixem, btk-core, cactus, caftools, cap3, cd-hit, cdna-db, clustalw, clustalw-mpi, clustalx, cluster3, coalesce, contralign, coot, copycat, cytoscape, das-proserver, dazzle, decipher, dotter, dotur, ecell, elph, emboss-explorer, emboss-kaptain, est-db, estferret, estscan, exalt, fasta, figaro, finex, fluctuate, forester, galaxy, gbioseq, gbrowse, genesplicer, genetrack, genezilla, genographer, glimmerhmm, gmv, haploview, hawkeye, hexamer, infernal, jalview, jigsaw, jmol, jtreeview, lamarc, logomat-m, lucy, mage2tab, maq, martj, mauvealigner, maxd, meme, mesquite, mgltools-bhtree, mgltools-dejavu, mgltools-geomutils, mgltools-opengltk, mgltools-pmv, mgltools-pyglf, mgltools-sff, mgltools-utpackages, mgltools-vision, mgltools-volume, migrate, minimus, mira, mirbase, molekel, molphy, mozilla-biofox, mrbayes, msatfinder, mummergpu, murasaki, mview, ncoils, ngila, oligoarrayaux, omegamap, operondb, paml, partigene, patman, pdb2pqr, pfaat, pftools, phpphylotree, phylip, phylographer, phylowin, phyml, plink, populations, prank, proalign, prot4est, pyrophosphate-tools, qtlcart, r-ape, r-happy, r-other-genabel, raster3d, raxml, rbs-finder, recombine, repeatfinder, reputer, roche454ace2caf, rose, seq-gen, sequenceconverter.app, smile, spice, splitstree, srf, ssaha, staden, tacg, taverna, taxinspector, tetra, tm-align, trace2dbest, tracetuner, transtermhp, treeplot, treetool, treevolve, trnascan-se, twain, uniprime, vienna-rna, wgs-assembler
+Description: Debian Med micro-biology packages
+ This metapackage will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences.
+
+Package: med-bio-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: bioperl, bioperl-run, libace-perl, libajax5-dev, libbio-graphics-perl, libbio-mage-perl, libbio-primerdesigner-perl, libbio-ruby, libgenome-1.3-0-dev, libgo-perl, libncbi6-dev, libnucleus5-dev, libqsearch-dev, libtfbs-perl, libvibrant6-dev, mcl, octave-bioinfo, python-biopython, r-cran-genetics, r-cran-haplo.stats
+Suggests: bioclipse, bioconductor, biomode, libbio-das-perl, libbio-mage-utils-perl, libbiococoa-dev, libbiojava-java, libgff-perl, libmems-1.5-1, libsbml1, limma, r-cran-rocr, seqan
+Description: Debian Med packages for development of micro-biology applications
+ This metapackage will install Debian packages which might be helpful
+ for development of applications for micro-biological research.
+
+Package: med-cms
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Suggests: zope-zms
+Description: Debian Med content management systems
+ This metapackage will install packages which are useful to build a
+ content management system for medical care.
+
+Package: med-epi
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: epigrass, r-cran-epibasix, r-cran-epitools
+Suggests: netepi-analysis, netepi-collection, r-cran-epi, r-cran-msm, r-cran-surveillance
+Description: Debian Med epidemiology related packages
+ This metapackage will install tools that are useful in epidemiological
+ research. Several packages making use of the GNU R data language for
+ statistical investigation. It might be a good idea to read the paper
+ "A short introduction to R for Epidemiology" at
+ http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
+
+Package: med-imaging
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, amide, ctn, dcmtk, dicomnifti, fslview, gwyddion, imagej, libvolpack1, medcon, minc-tools, nifti-bin, python-mvpa, python-nifti, sofa-apps, xmedcon
+Suggests: afni, bioimagesuite, blox, brainvisa, caret, conquest-dicom-server, ctsim, dcm4che, devide, dicom3tools, dicom4j, dicomscope, drjekyll, ecg2png, fsl, gdcm, imagemagick, imview, kradview, libvista2, lipsia, maris, mesa-test-tools, micromanager, mni-autoreg, mni-n3, mrisim, odin, opendicom.net, opensourcepacs, piano, pixelmed, pixelmed-dicom-toolkit, pngquant, slicer, via, visit
+Description: Debian Med imaging packages
+ This metapackage will install Debian packages which might be useful in
+ medical image processing.
+ .
+ It installs several packages supporting DICOM (Digital Imaging and
+ Communications in Medicine) which is the de-facto standard for medical
+ image management. The standard defines data structures and services for
+ the exchange of medical images and related information. The latest release
+ has been published in 2008 and consists of 18 parts.
+ .
+ For more information, you can visit the NEMA homepage
+ http://medical.nema.org/ .
+ .
+ The status of the official DICOM base standard plus all the
+ supplements and correction items are summarized at David Clunie's webpage:
+ http://www.dclunie.com/dicom-status/status.html
+ where you'll find direct links to the most recent yearly edition
+ ftp://medical.nema.org/medical/dicom/2008/ .
+
+Package: med-imaging-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cimg-dev, ctn-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti1-dev, libvolpack1-dev, python-mvpa
+Suggests: igstk-examples, insighttoolkit3-examples, libigstk3-dev, libmni-perllib-perl, libnifti-doc, libvista2-dev, libvtk5, nipy, odin, python-libavg, rumba
+Description: Debian Med packages for medical image development
+ This metapackage will install Debian packages which might be useful
+ for developing applications for medical image processing.
+
+Package: med-pharmacy
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: chemtool
+Description: Debian Med packages for pharmaceutical research
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ pharmaceutical research.
+
+Package: med-physics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: octave3.0, paw, paw++, r-base | r-base-core
+Suggests: biosig, gate, paw-demos
+Description: Debian Med packages for medical physicists
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ medical physicists in radiation oncology, diagnostics imaging
+ and related fields.
+
+Package: med-practice
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, gnumed-client, libchipcardc2, libchipcardd0
+Suggests: clearhealth, elementalclinic, elexis, freeb, freemed, gnumed-server, mirrormed, mirth, openemr, openpms, resmedicinae, sqlclinic, tinyheb
+Description: Debian Med packages for practice management
+ This metapackage contains dependencies for a collection of software
+ which might be helpful for practitioners to manage their practice.
+
+Package: med-statistics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: r-cran-qvalue, r-cran-randomforest
+Suggests: science-statistics
+Description: Debian Med statistics
+ This metapackage will install packages which are helpful to do statistics
+ with a special focus on tasks in medical care.
+
+Package: med-tools
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cycle, hunspell-de-med, mencal, pondus, wgerman-medical
+Suggests: cl-pubmed, hunspell-en-med, linuxorg-pcal, mssstest
+Description: Debian Med several tools
+ This metapackage will install tools for several purposes in health care.
+ Currently it contains some simple programs for Personal Health.
+
+Package: med-typesetting
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: texlive-latex-extra, texlive-science
+Suggests: bibus, kbibtex
+Description: Debian Med support for typesetting and publishing
+ This metapackage will install Debian packages that might be helpful
+ for typesetting and publishing in medical care and structural
+ biology.
+
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