[Blends-commit] [SCM] science branch, master, updated. b79215687d0031e8e15ecd3fa606a06a9054bbe8
Andreas Tille
tille at debian.org
Fri Oct 24 09:51:49 UTC 2014
The following commit has been merged in the master branch:
commit 7d8d997e420d95f97ecd7b9df5f2fd0efc133631
Author: Andreas Tille <tille at debian.org>
Date: Fri Oct 24 08:31:33 2014 +0200
Changelog auto-created using blends-dev from GSoC
diff --git a/debian/changelog b/debian/changelog
index 0927cff..7da5246 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-debian-science (1.3) UNRELEASED; urgency=medium
+debian-science (1.3) unstable; urgency=medium
[ Andreas Tille ]
* d/source/format: 3.0 (native)
@@ -6,6 +6,73 @@ debian-science (1.3) UNRELEASED; urgency=medium
[ Ole Streicher ]
* add astropy affiliated packages
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-neuroscience-cognitive
+ added:
+ Depends: python-nipype, python-mvpa2, python-nitime, python-dipy,
+ python-nibabel, openwalnut-qt4, python-dicom, python-nipy
+ removed:
+ Depends: python-mvpa, python-nifti
+ -science-viewing-dev
+ added:
+ Depends: python3-skimage, python-vtk6, python-plplot-qt, libvtk6-java,
+ libplplot-dev, libvtk6-dev, python3-skimage-lib
+ -science-linguistics
+ added:
+ Suggests: python-nltk, python3-nltk
+ -science-machine-learning
+ added:
+ Depends: python-mvpa2
+ removed:
+ Depends: python-mvpa
+ -science-mathematics-dev
+ added:
+ Depends: libug-dev, python-pyoperators | python3-pyoperators,
+ python-pyviennacl, python3-pyviennacl
+ -science-electronics
+ added:
+ Depends: qflow, magic, yosys, berkeley-abc, qrouter
+ -science-numericalcomputation
+ added:
+ Depends: python-lmfit | python3-lmfit
+ -science-typesetting
+ removed:
+ Depends: texmacs-extra-fonts
+ -science-engineering-dev
+ added:
+ Depends: libug-dev, r-cran-rnetcdf
+ -science-astronomy
+ added:
+ Depends: splash, sncosmo, astroml, astroquery, python3-astropy
+ -science-physics-dev
+ added:
+ Depends: python-xrayutilities
+ -science-distributedcomputing
+ added:
+ Depends: htcondor
+ removed:
+ Depends: condor
+ -science-dataacquisition-dev
+ added:
+ Depends: python-xrayutilities
+ -science-nanoscale-physics-dev
+ added:
+ Depends: crystfel-dev, libssm-dev, r-cran-rnetcdf, python-xrayutilities
+ -science-viewing
+ added:
+ Depends: trend, python-pyqtgraph
+ Suggests: r-cran-scatterplot3d
+ -science-nanoscale-physics
+ added:
+ Depends: liblapack3, libblas3, python-lmfit | python3-lmfit, crystfel
+ removed:
+ Depends: liblapack3gf, libblas3gf
+ -science-meteorology-dev
+ added:
+ Depends: r-cran-rnetcdf
+
-- Andreas Tille <tille at debian.org> Thu, 19 Jun 2014 21:56:24 +0200
debian-science (1.2) unstable; urgency=medium
diff --git a/dependency_data/debian-science_1.3.json b/dependency_data/debian-science_1.3.json
new file mode 100644
index 0000000..2c06ed4
--- /dev/null
+++ b/dependency_data/debian-science_1.3.json
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting", "science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer", "xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit", "amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin", "python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2", "python-nipy", "python-nipype", "python-nitime", "python-dipy", "openwalnut-qt4", "caret", "python-pyepl", "praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron", "itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr", "mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology": {"ignore": [], "suggests": ["paraview", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python-openturns", "python-dap"], "depends": ["cdo", "nco", "dballe", "zygrib", "ncview", "grads", "ferret-vis", "magics++", "freefoam", "visit", "libgrib-api-tools", "ecaccess", "geonetwork", "ncl", "python-netcdf", "python-grib", "python-drslib", "python-cmor", "python-sphere", "cmip5-cmor-tables", "aweather", "libdap-bin", "libdap-doc", "vistrails"], "recommends": [], "avoid": []}, "financial": {"ignore": [], "suggests": [], "depends": ["r-cran-fasianoptions", "r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeseries", "r-cran-fportfolio"], "recommends": [], "avoid": []}, "robotics": {"ignore": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime", "libvtk5.4", "octave", "gnuplot", "octovis"], "depends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros", "openrtm", "openhrp", "pcl", "gazebo", "openrave", "octomap-tools", "octovis"], "recommends": [], "avoid": []}, "robotics-dev": {"ignore": [], "suggests": ["visp-images-data"], "depends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat-dev", "libconsole-bridge-dev", "libcomedi-dev", "python-comedilib", "libccd-dev"], "recommends": [], "avoid": []}, "highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []}, "psychophysics": {"ignore": [], "suggests": ["science-neuroscience-cognitive", "science-bci", "visionegg", "python-pyxid", "tscope", "opensesame", "psytoolkit", "debruijn", "psychlops", "pebl"], "depends": ["psychopy", "python-pyoptical", "python-pyepl", "libfreenect-dev", "nrec"], "recommends": ["octave-psychtoolbox-3"], "avoid": []}, "simulations": {"ignore": [], "suggests": [], "depends": ["sumo", "esys-particle", "lammps", "liggghts", "yade", "python-deap", "freefoam", "getdp", "fdmnes", "radiance", "music-bin"], "recommends": [], "avoid": []}, "neuroscience-datasets": {"ignore": [], "suggests": [], "depends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti", "haxby2001-faceobject", "fsl-harvard-oxford-atlases", "fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas", "fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas", "fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas", "mclaren-rhesus-macaque-atlas", "sri24-atlas"], "recommends": [], "avoid": []}, "viewing-dev": {"ignore": [], "suggests": [], "depends": ["pdl", "gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib", "python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev", "python-gnuplot", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev", "libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java", "vtk-examples", "libvtk6-dev", "libvtk6-java", "python-vtk6", "python-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-0.9.2-0-dev", "libeinspline-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt4-dev", "python-qwt3d-qt4", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "libplplot-dev", "python-plplot-qt"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["libmrmpi-dev", "python-mrjob"], "depends": ["pegasus-wms", "openstereogram", "xoscope"], "recommends": [], "avoid": []}, "geography": {"ignore": [], "suggests": ["googleearth-package", "sumo", "grace6"], "depends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsdrive", "gpsman", "earth3d", "openscenegraph", "thuban", "drawmap", "gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "php5-mapscript", "phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "postgresql-9.3-postgis-2.1", "osm2pgsql", "josm", "josm-plugins", "merkaartor", "gosmore", "python-mapnik", "mapnik-utils", "osmpbf-bin", "imposm", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps", "pgadmin3", "openjump"], "recommends": [], "avoid": []}, "linguistics": {"ignore": [], "suggests": ["libticcutils2-dev", "frogdata", "libtimbl3-dev", "libtimbl4-dev", "libtimblserver2-dev", "libmbt0-dev", "libucto1-dev", "libfolia-dev", "python-timbl", "wnsqlbuilder", "python-nltk", "python3-nltk"], "depends": ["wordnet", "apertium", "link-grammar", "artha", "sequitur-g2p", "timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl", "frog", "collatinus", "travatar"], "recommends": [], "avoid": []}, "dataacquisition": {"ignore": [], "suggests": ["gnudatalanguage", "comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests", "gpsd", "tango-db", "tango-starter", "tango-accesscontrol", "python-pytango", "python-taurus", "hart"], "depends": ["engauge-digitizer", "qtdmm", "g3data", "ktimetrace", "netcdf-bin", "python-sardana", "jaaa", "ghkl", "narval-utils", "xyscan", "filo", "python-visa", "mx-dataacquisition", "epics", "plot-digitizer", "libfreenect-dev", "opendap"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["r-cran-spc", "science-mathematics", "libtamuanova-dev"], "depends": ["ess", "littler", "r-recommended", "rkward", "r-cran-mapproj", "r-cran-abind", "r-cran-bayesm", "r-cran-boot", "r-cran-cairodevice", "r-cran-car", "r-cran-chron", "r-cran-cluster", "r-cran-coda", "r-cran-codetools", "r-cran-date", "r-cran-dbi", "r-cran-rms", "r-cran-eco", "r-cran-effects", "r-cran-fbasics", "r-cran-fcopulae", "r-cran-fecofin", "r-cran-fextremes", "r-cran-fmultivar", "r-cran-foptions", "r-cran-foreign", "r-cran-fportfolio", "r-cran-timedate", "r-cran-gdata", "r-cran-gmodels", "r-cran-gplots", "r-cran-gregmisc", "r-cran-gtools", "r-cran-hdf5", "r-cran-hmisc", "r-cran-its", "r-cran-kernsmooth", "r-cran-lattice", "r-cran-latticeextra", "r-cran-lhs", "r-cran-lme4", "r-cran-lmtest", "r-cran-mapdata", "r-cran-maps", "r-cran-matchit", "r-cran-matrix", "r-cran-mcmcpack", "r-cran-mgcv", "r-cran-misc3d", "r-cran-mnp", "r-cran-multcomp", "r-cran-mvtnorm", "r-cran-nlme", "r-cran-pscl", "r-cran-psy", "r-cran-qtl", "r-cran-quadprog", "r-cran-rcmdr", "r-cran-relimp", "r-cran-rggobi", "r-cran-rgl", "r-cran-rgtk2", "r-cran-rmpi", "r-cran-rmysql", "r-cran-rodbc", "r-cran-rpart", "r-cran-rpvm", "r-cran-rquantlib", "r-cran-rserve", "r-cran-rsprng", "r-cran-sandwich", "r-cran-sm", "r-cran-snow", "r-cran-strucchange", "r-cran-survival", "r-cran-tkrplot", "r-cran-tseries", "r-cran-vgam", "r-cran-mass", "r-cran-xml", "r-cran-zelig", "r-cran-zoo", "r-cran-msm", "r-cran-amore", "r-cran-teachingdemos", "r-cran-expm", "psignifit", "python-stats", "python-scipy", "r-cran-vcd", "r-cran-permute", "python-statsmodels", "r-cran-spam", "r-cran-spatstat", "r-cran-deldir", "r-cran-fastcluster", "r-cran-statmod", "python-openturns", "python-pandas", "r-cran-ecodist", "r-cran-energy", "r-cran-mvnormtest", "r-cran-acepack", "r-cran-fcalendar", "rstudio"], "recommends": [], "avoid": []}, "mathematics-dev": {"ignore": [], "suggests": ["libtet1.4.2-dev", "libjlapack-java", "libmtj-java", "libnetlib-java", "libitpp-dev", "libnauty-dev", "liblrs-dev", "libqrupdate-dev", "openturns-examples", "cfortran", "givaro-dev-doc", "givaro-user-doc", "fflas-ffpack-dev-doc", "fflas-ffpack-user-doc", "libcliquer-dev", "libntl-dev", "libdune-istl-dev", "libdune-localfunctions-dev"], "depends": ["libmesh-dev", "libnglib-dev", "python-numpy", "python-numexpr | python3-numexpr", "libgsl0-dev", "liblapack-dev", "libatlas-base-dev", "libblas-dev", "libopenblas-dev", "libsuperlu-dev", "libglpk-dev", "python-glpk", "libglpk-java", "libcgal-dev", "libqhull-dev", "libmatheval-dev", "python-openopt", "libmatio-dev", "libblitz0-dev", "libjama-dev", "libtnt-dev", "liblip-dev", "libranlip-dev", "libarpack2-dev", "libarpack++2-dev", "code-saturne-bin", "code-saturne-include", "libarmadillo-dev", "libstxxl-dev", "libnewmat10-dev", "libmadlib-dev", "libtet1.4-dev", "dolfin-dev", "python-dolfin", "libslepc3.4.2-dev", "petsc-dev", "libtrilinos-dev", "python-openturns", "libopenturns-dev", "libqd-dev", "libcqrlib2-dev", "libcvector2-dev", "libhypre-dev", "libitsol-dev", "libmuparser-dev", "libsparskit-dev", "libspooles-dev", "libsuitesparse-dev", "libsuitesparse-metis-dev", "libparmetis-dev", "ufc", "python-ufc", "python-ffc", "python-ufl", "libscythestat-dev", "libfreefem++-dev", "libfreefem-dev", "libgivaro-dev", "fflas-ffpack", "liblevmar-dev", "libpolybori-dev", "libpolybori-groebner-dev", "python-polybori", "libquadrule-dev", "libcdd-dev", "libec-dev", "libgf2x-dev", "libiml-dev", "liblfunction-dev", "libfplll-dev", "liblinbox-dev", "liblrcalc-dev", "libm4ri-dev", "libm4rie-dev", "libratpoints-dev", "libsymmetrica-dev", "libtachyon-dev", "libzn-poly-dev", "libpynac-dev", "gap-dev", "libnfft3-dev", "python-fftw3 | python3-fftw3", "libfftw3-dev", "fftw-dev", "sfftw-dev", "liblbfgs-dev", "libdogleg-dev", "libigraph0-dev", "libalglib-dev", "libeigen3-dev", "libviennacl-dev", "python-pyviennacl", "python3-pyviennacl", "libgnuplot-iostream-dev", "libqcustomplot-dev", "libquadrule-dev", "libcneartree-dev", "libmpfrc++-dev", "libscscp1-dev", "python-linop | python3-linop", "libcminpack-dev", "minpack-dev", "libeinspline-dev", "libdune-grid-dev", "libann-dev", "libflann-dev", "libdouble-conversion-dev", "libfeel++-dev", "python-ferari", "python-pynfft | python3-pynfft", "libug-dev", "python-pyoperators | python3-pyoperators"], "recommends": [], "avoid": []}, "imageanalysis": {"ignore": [], "suggests": ["scilab-sivp", "cimg-dev", "libsimage-dev", "libvlfeat-dev", "libvisad-java", "libvigraimpex-dev", "python-vigra"], "depends": ["gpivtools", "gpiv", "libcv-dev", "gwyddion", "teem-apps"], "recommends": [], "avoid": []}, "machine-learning": {"ignore": [], "suggests": ["science-statistics", "science-numericalcomputation", "libacovea-dev", "science-typesetting", "ask"], "depends": ["python-pyke", "gprolog", "yap", "libtorch3-dev", "libshogun-dev", "libfann-dev", "libsvm-dev", "libcomplearn-dev", "libqsearch-dev", "liblinear-dev", "libocas-dev", "python-scikits-learn", "python-mdp", "python-mlpy", "weka", "vowpal-wabbit", "r-cran-mass", "r-cran-bayesm", "r-cran-class", "r-cran-cluster", "r-cran-msm", "r-cran-mcmcpack", "r-cran-mnp", "r-cran-amore", "r-cran-gbm", 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"gate", "openfoam", "jfreemesh", "spis", "espresso++", "cp2k", "octaviz", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "fdmnes"], "recommends": [], "avoid": []}, "meteorology-dev": {"ignore": [], "suggests": ["gfortran", "ksh", "pkg-config", "openturns-examples", "libfeel++-dev"], "depends": ["libemos-dev", "libgadap-dev", "libcmor-dev", "libgrib-api-dev", "libgrib-api-tools", "libgrib2c-dev", "libhe5-hdfeos-dev", "libhdfeos-dev", "libproj-dev", "libgctp-dev", "libnetcdf-dev", "netcdf-bin", "r-cran-rnetcdf", "liblapack-dev", "libblas-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "libblas-doc", "liblapack-doc", "libfftw3-doc", "liblas-dev", "libsphere-dev", "libterralib-dev", "liboasis3-dev", "libudunits2-dev", "libdap-dev", "python-openturns", "libopenturns-dev", "wcslib-dev", "wcslib-doc", "libfreefoam-dev", "librsl-dev", "libwreport-dev"], "recommends": [], "avoid": []}}
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