[Blends-commit] [SCM] med branch, master, updated. 995e5823a960673507aac016512c079179dc6e04
Andreas Tille
tille at debian.org
Tue Sep 1 20:48:23 UTC 2015
The following commit has been merged in the master branch:
commit 042cd03ececadcb42a71339ccf78d2bf7df5b212
Author: Andreas Tille <tille at debian.org>
Date: Tue Sep 1 19:51:27 2015 +0200
Rebuild with traditional blends-dev but sorted tasksel control file
diff --git a/debian-med-tasks.desc b/debian-med-tasks.desc
index 042240e..dde7554 100644
--- a/debian-med-tasks.desc
+++ b/debian-med-tasks.desc
@@ -4,7 +4,8 @@ Description: Debian Med micro-biology packages
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences.
Relevance: 10
-Key:
+Enhances: t-coffee
+Key:
med-bio
Packages: list
abacas
@@ -23,10 +24,12 @@ Packages: list
autodock
autodock-vina
autogrid
+ ballview
bamtools
barrnap
bedtools
biomaj
+ blasr
blast2
bowtie
bowtie2
@@ -50,6 +53,7 @@ Packages: list
disulfinder
dnaclust
dssp
+ ea-utils
ecopcr
edtsurf
embassy-domainatrix
@@ -66,10 +70,12 @@ Packages: list
ffindex
figtree
filo
+ fitgcp
flexbar
freecontact
gamgi
garlic
+ gasic
gbrowse
gdpc
genometools
@@ -135,6 +141,7 @@ Packages: list
njplot
norsnet
norsp
+ openms
paraclu
parsinsert
pdb2pqr
@@ -184,6 +191,7 @@ Packages: list
r-bioc-biostrings
r-bioc-cummerbund
r-bioc-edger
+ r-bioc-genefilter
r-bioc-gviz
r-bioc-hilbertvis
r-bioc-limma
@@ -216,6 +224,7 @@ Packages: list
scythe
seaview
seqan-apps
+ seqprep
seqtk
sibsim4
sickle
@@ -226,19 +235,25 @@ Packages: list
snp-sites
soapdenovo
soapdenovo2
+ sortmerna
+ spread-phy
squizz
sra-toolkit
ssake
+ stacks
staden
staden-io-lib-utils
subread
+ sumatra
swarm
t-coffee
tabix
+ tantan
theseus
tigr-glimmer
tm-align
tophat
+ topp
toppred
transdecoder
transtermhp
@@ -260,7 +275,7 @@ Description: Debian Med packages for development of micro-biology applications
This metapackage will install Debian packages which might be helpful
for development of applications for micro-biological research.
Relevance: 10
-Key:
+Key:
med-bio-dev
Packages: list
bioperl
@@ -279,6 +294,7 @@ Packages: list
libbiojava3-java
libbiojava4-java
libchado-perl
+ libdivsufsort-dev
libffindex0-dev
libfreecontact-perl
libfreecontact0-dev
@@ -295,6 +311,7 @@ Packages: list
libmuscle-3.7-dev
libncbi6-dev
libnhgri-blastall-perl
+ libopenms-dev
libpal-java
librcsb-core-wrapper0-dev
librdp-taxonomy-tree-java
@@ -324,10 +341,14 @@ Packages: list
python-freecontact
python-htseq
python-mmtk
+ python-pbcore
+ python-pbh5tools
+ python-pysam
python-rdkit
python-screed
python3-hyphy
python3-ruffus
+ python3-skbio
r-bioc-biobase
r-cran-genetics
r-cran-haplo.stats
@@ -342,28 +363,11 @@ Description: Debian Med bioinformatics applications usable in Next Generation Se
sequences produced by next generation sequencing.
Relevance: 10
Packages: list
- bedtools
- bowtie
- bwa
- fastx-toolkit
- filo
kissplice
- last-align
- maq
mira-assembler
mothur
- picard-tools
qiime
- r-bioc-edger
- r-bioc-hilbertvis
- samtools
- sra-toolkit
- ssake
- tabix
- tophat
uc-echo
- vcftools
- velvet
Task: med-bio-phylogeny
Section: debian-med
@@ -388,6 +392,7 @@ Packages: list
muscle
mustang
njplot
+ phylip
phyml
poa
populations
@@ -395,7 +400,9 @@ Packages: list
probalign
probcons
proda
+ seaview
sigma-align
+ spread-phy
t-coffee
tm-align
tree-puzzle
@@ -409,7 +416,7 @@ Description: Debian Med bioinformatics applications usable in cloud computing
depend on graphical toolkits and therefore can fit on system images for use
in cloud computing clusters, where space can be limited.
Relevance: 10
-Key:
+Key:
med-cloud
Packages: list
acedb-other
@@ -442,118 +449,56 @@ Packages: list
circos
clearcut
clonalframe
- clustalo
- clustalw
concavity
- conservation-code
datamash
- dialign
- dialign-tx
discosnp
disulfinder
dnaclust
dssp
- embassy-domainatrix
- embassy-domalign
- embassy-domsearch
- emboss
- exonerate
fastdnaml
fastlink
fastqc
fasttree
fastx-toolkit
filo
+ fitgcp
flexbar
freecontact
+ gasic
genometools
- gff2aplot
- gff2ps
giira
- glam2
grinder
- gromacs
- hhsuite
- hmmer
idba
infernal
- jellyfish
- kalign
kissplice
last-align
loki
macs
- mafft
mapsembler2
maq
melting
minia
mipe
mira-assembler
- mlv-smile
mothur
- mrbayes
- mummer
- muscle
- mustang
ncbi-epcr
ncbi-tools-bin
ncoils
- neobio
- paraclu
parsinsert
- pdb2pqr
perm
phyml
phyutility
picard-tools
plink
- poa
- prank
- prime-phylo
primer3
- probabel
- probcons
- proda
- prodigal
- pynast
- python-biopython
python-cogent
- python3-biopython
- qiime
- r-bioc-edger
- r-bioc-hilbertvis
- r-cran-pvclust
- r-cran-qtl
- r-cran-vegan
- r-other-mott-happy.hbrem
- raster3d
- readseq
rnahybrid
rtax
samtools
- seqan-apps
- sibsim4
- sigma-align
- sim4
smalt
- snap
- soapdenovo
- soapdenovo2
- squizz
- sra-toolkit
ssake
- staden-io-lib-utils
- t-coffee
- tabix
- theseus
- tigr-glimmer
tophat
- tree-puzzle
- vcftools
velvet
- wise
- zalign
Task: med-cms
Section: debian-med
@@ -570,7 +515,7 @@ Description: Debian Med drug databases
applications. The database can be accessed by any EMR using
the application.
Relevance: 10
-Key:
+Key:
med-data
Packages: list
freediams
@@ -583,9 +528,10 @@ Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
which might be helpful for dentists to manage their practice.
Relevance: 10
-Key:
+Key:
med-dental
Packages: list
+ entangle
imagetooth
openmolar
@@ -598,7 +544,7 @@ Description: Debian Med epidemiology related packages
"A short introduction to R for Epidemiology" at
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
Relevance: 10
-Key:
+Key:
med-epi
Packages: list
epigrass
@@ -608,6 +554,7 @@ Packages: list
r-cran-epicalc
r-cran-epir
r-cran-epitools
+ r-cran-seroincidence
r-cran-surveillance
Task: med-his
@@ -619,16 +566,16 @@ Description: Debian Med suggestions for Hospital Information Systems
only preconditions are finished but hopefully helpful in hospitals
anyway.
Relevance: 10
-Key:
+Key:
med-his
Packages: list
fis-gtm
Task: med-imaging
Section: debian-med
-Description: Debian Med imaging packages
+Description: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
- medical image processing.
+ medical image processing and visualization.
.
It installs several packages supporting DICOM (Digital Imaging and
Communications in Medicine) which is the de-facto standard for medical
@@ -645,12 +592,14 @@ Description: Debian Med imaging packages
where you'll find direct links to the most recent yearly edition
ftp://medical.nema.org/medical/dicom/2008/ .
Relevance: 10
-Key:
+Key:
med-imaging
Packages: list
aeskulap
amide
+ ants
biosig-tools
+ camitk-imp
caret
conquest-common
ctn
@@ -661,10 +610,14 @@ Packages: list
dicomscope
fslview
gdf-tools
+ ginkgocadx
+ gofigure2
gwyddion
imagej
imagevis3d
invesalius
+ ismrmrd-tools
+ itksnap
king
libgdcm-tools
medcon
@@ -677,17 +630,16 @@ Packages: list
mrtrix
nifti-bin
odin
+ openmeeg-tools
openslide-tools
orthanc
pixelmed-apps
plastimatch
python-dicom
- python-dipy
python-mvpa2
python-nibabel
python-nipy
python-nipype
- python-nitime
python-surfer
sigviewer
sofa-apps
@@ -695,14 +647,17 @@ Packages: list
voxbo
vtk-dicom-tools
xmedcon
+ python-dipy
+ python-nitime
Task: med-imaging-dev
Section: debian-med
-Description: Debian Med packages for medical image development
+Description: Debian Med image processing and visualization packages development
This metapackage will install Debian packages which might be useful
- for developing applications for medical image processing.
+ for developing applications for medical image processing and
+ visualization.
Relevance: 10
-Key:
+Key:
med-imaging-dev
Packages: list
cimg-dev
@@ -710,10 +665,13 @@ Packages: list
gmic
libactiviz.net-cil
libbiosig-dev
+ libcamitk3-dev
libcv-dev
libedf-dev
+ libgdcm2-dev
libgdf-dev
libgiftiio-dev
+ libigstk4-dev
libinsighttoolkit3-dev
libismrmrd-dev
libmaxflow-dev
@@ -723,6 +681,7 @@ Packages: list
libmiaviewit-dev
libminc-dev
libnifti-dev
+ libopenmeeg-dev
libopenslide-dev
libpapyrus3-dev
libteem-dev
@@ -758,7 +717,7 @@ Description: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
be useful ro run a medical laboratory.
Relevance: 10
-Key:
+Key:
med-laboratory
Packages: list
opencfu
@@ -769,7 +728,7 @@ Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
oncology.
Relevance: 10
-Key:
+Key:
med-oncology
Packages: list
dicompyler
@@ -781,10 +740,11 @@ Description: Debian Med packages for pharmaceutical research
collection of software and documentation which is useful for
pharmaceutical research.
Relevance: 10
-Key:
+Key:
med-pharmacy
Packages: list
chemtool
+ r-cran-dosefinding
Task: med-physics
Section: debian-med
@@ -794,7 +754,7 @@ Description: Debian Med packages for medical physicists
medical physicists in radiation oncology, diagnostics imaging
and related fields.
Relevance: 10
-Key:
+Key:
med-physics
Packages: list
biosig-tools
@@ -810,11 +770,14 @@ Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
which might be helpful for practitioners to manage their practice.
Relevance: 10
-Key:
+Key:
med-practice
Packages: list
+ clinica
+ entangle
freediams
freemedforms-emr
+ ginkgocadx
gnumed-client
gnumed-server
libchipcard-tools
@@ -827,7 +790,7 @@ Description: Debian Med packages for psychology
This metapackage contains dependencies for a collection of software
which might be helpful for psychological research.
Relevance: 10
-Key:
+Key:
med-psychology
Packages: list
praat
@@ -843,7 +806,7 @@ Description: Debian Med packages for rehabilitation technologies
This metapackage will install tools that are useful for
rehabilitation and therapy.
Relevance: 10
-Key:
+Key:
med-rehabilitation
Packages: list
sitplus
@@ -854,12 +817,13 @@ Description: Debian Med statistics
This metapackage will install packages which are helpful to do statistics
with a special focus on tasks in medical care.
Relevance: 10
-Key:
+Key:
med-statistics
Packages: list
r-bioc-edger
r-bioc-limma
r-bioc-qvalue
+ r-cran-beeswarm
r-cran-pvclust
r-cran-randomforest
@@ -869,7 +833,7 @@ Description: Debian Med several tools
This metapackage will install tools for several purposes in health care.
Currently it contains some simple programs for Personal Health.
Relevance: 10
-Key:
+Key:
med-tools
Packages: list
cronometer
@@ -892,7 +856,7 @@ Description: Debian Med support for typesetting and publishing
for typesetting and publishing in medical care and structural
biology.
Relevance: 10
-Key:
+Key:
med-typesetting
Packages: list
king
diff --git a/debian/control b/debian/control
index c40ea0c..ae4da97 100644
--- a/debian/control
+++ b/debian/control
@@ -54,679 +54,703 @@ Description: Debian Med general config package
Debian by simply installing the relevant metapackage
Package: med-bio
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: abacas,
- acedb-other [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- acedb-other-belvu [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- acedb-other-dotter [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- aegean [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- aevol [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ acedb-other,
+ acedb-other-belvu,
+ acedb-other-dotter,
+ aegean,
+ aevol,
alien-hunter,
- altree [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- amap-align [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ampliconnoise [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- anfo [!s390 !hurd-i386 !kfreebsd-amd64 !ppc64el !sparc !arm64 !ia64 !kfreebsd-i386],
- aragorn [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- arden [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- autodock [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- autodock-vina [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- autogrid [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- bamtools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ altree,
+ amap-align,
+ ampliconnoise,
+ anfo,
+ aragorn,
+ arden,
+ autodock,
+ autodock-vina,
+ autogrid,
+ ballview,
+ bamtools,
barrnap,
- bedtools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ bedtools,
biomaj,
- blast2 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- bowtie [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- bowtie2 [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- boxshade [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- bwa [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- cassiopee [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- cd-hit [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- cdbfasta [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ blasr,
+ blast2,
+ bowtie,
+ bowtie2,
+ boxshade,
+ bwa,
+ cassiopee,
+ cd-hit,
+ cdbfasta,
chimeraslayer,
circos,
- clearcut [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- clonalframe [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- clustalo [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- clustalw [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- clustalx [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- concavity [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ clearcut,
+ clonalframe,
+ clustalo,
+ clustalw,
+ clustalx,
+ concavity,
conservation-code,
- dialign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dialign-tx [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- discosnp [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- disulfinder [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dnaclust [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dssp [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ecopcr [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- edtsurf [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- embassy-domainatrix [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- embassy-domalign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- embassy-domsearch [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- emboss [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- exonerate [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ dialign,
+ dialign-tx,
+ discosnp,
+ disulfinder,
+ dnaclust,
+ dssp,
+ ea-utils,
+ ecopcr,
+ edtsurf,
+ embassy-domainatrix,
+ embassy-domalign,
+ embassy-domsearch,
+ emboss,
+ exonerate,
fastaq,
- fastdnaml [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- fastlink [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ fastdnaml,
+ fastlink,
fastqc,
- fasttree [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- fastx-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ffindex [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ fasttree,
+ fastx-toolkit,
+ ffindex,
figtree,
- filo [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- flexbar [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gamgi [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- garlic [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ filo,
+ fitgcp,
+ flexbar,
+ freecontact,
+ gamgi,
+ garlic,
+ gasic,
gbrowse,
- gdpc [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- genometools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gentle [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gff2aplot [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ gdpc,
+ genometools,
+ gentle,
+ gff2aplot,
gff2ps,
- ghemical [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !arm64 !ia64 !kfreebsd-i386],
- giira [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- glam2 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ ghemical,
+ giira,
+ glam2,
grinder,
- gromacs [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gwama [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- hhsuite [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- hmmer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- hmmer2 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- hyphy-mpi [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386] | hyphy-pt [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- hyphygui [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- idba [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- infernal [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- ipig [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ gromacs,
+ gwama,
+ hhsuite,
+ hmmer,
+ hmmer2,
+ hyphy-mpi | hyphy-pt,
+ hyphygui,
+ idba,
+ infernal,
+ ipig,
jalview,
- jellyfish [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ jellyfish,
jmol,
- kalign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- kissplice [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- kmer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- last-align [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ kalign,
+ kissplice,
+ kmer,
+ last-align,
librg-utils-perl,
- logol-bin [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- loki [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ltrsift [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- macs [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ logol-bin,
+ loki,
+ ltrsift,
+ macs,
macsyfinder,
- mafft [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mapsembler2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- maq [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- maqview [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- massxpert [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mauve-aligner [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- melting [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ mafft,
+ mapsembler2,
+ maq,
+ maqview,
+ massxpert,
+ mauve-aligner,
+ melting,
metastudent,
- microbegps [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ microbegps,
microbiomeutil,
- minia [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ minia,
mipe,
- mira-assembler [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mlv-smile [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mothur [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- mrbayes [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mrs [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- mummer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- murasaki [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- muscle [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mustang [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- nast-ier [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncbi-blast+ [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncbi-epcr [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncbi-seg [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncbi-tools-bin [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncbi-tools-x11 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncoils [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ mira-assembler,
+ mlv-smile,
+ mothur,
+ mrbayes,
+ mrs,
+ mummer,
+ murasaki,
+ muscle,
+ mustang,
+ nast-ier,
+ ncbi-blast+,
+ ncbi-epcr,
+ ncbi-seg,
+ ncbi-tools-bin,
+ ncbi-tools-x11,
+ ncoils,
neobio,
- njplot [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ njplot,
norsnet,
norsp,
- paraclu [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- parsinsert [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- pdb2pqr [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ openms,
+ paraclu,
+ parsinsert,
+ pdb2pqr,
perlprimer,
- perm [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- phylip [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- phyml [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- phyutility [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ perm,
+ phylip,
+ phyml,
+ phyutility,
picard-tools,
plasmidomics,
- plink [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- poa [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- populations [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- prank [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ plink,
+ poa,
+ populations,
+ prank,
predictnls,
predictprotein,
- prime-phylo [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- primer3 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- proalign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- probabel [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386],
- probalign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- probcons [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- proda [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- prodigal [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !armhf !ia64 !kfreebsd-i386],
+ prime-phylo,
+ primer3,
+ proalign,
+ probabel,
+ probalign,
+ probcons,
+ proda,
+ prodigal,
profbval,
profisis,
- profnet-bval [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profnet-chop [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profnet-con [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profnet-isis [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profnet-md [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profnet-norsnet [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profnet-prof [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profnet-snapfun [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ profnet-bval,
+ profnet-chop,
+ profnet-con,
+ profnet-isis,
+ profnet-md,
+ profnet-norsnet,
+ profnet-prof,
+ profnet-snapfun,
profphd,
- profphd-net [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- profphd-utils [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- proftmb [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- progressivemauve [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- pycorrfit [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- pymol [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ profphd-net,
+ profphd-utils,
+ proftmb,
+ progressivemauve,
+ pycorrfit,
+ pymol,
pynast,
- pyscanfcs [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- qiime [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-bioc-annotate [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-bioc-biostrings [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ pyscanfcs,
+ python-cogent,
+ qiime,
+ r-bioc-annotate,
+ r-bioc-biostrings,
r-bioc-cummerbund,
- r-bioc-edger [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ r-bioc-edger,
+ r-bioc-genefilter,
r-bioc-gviz,
- r-bioc-hilbertvis [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-bioc-limma [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-bioc-rtracklayer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-ape [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-genabel [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-phangorn [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-qtl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-seqinr [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-vegan [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ r-bioc-hilbertvis,
+ r-bioc-limma,
+ r-bioc-rtracklayer,
+ r-cran-ape,
+ r-cran-genabel,
+ r-cran-phangorn,
+ r-cran-qtl,
+ r-cran-seqinr,
+ r-cran-vegan,
r-other-bio3d,
- r-other-mott-happy.hbrem [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- rasmol [!s390 !hurd-i386 !kfreebsd-amd64 !ppc64el !sparc !ia64 !kfreebsd-i386],
- raster3d [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- rate4site [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- raxml [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- ray [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ r-other-mott-happy.hbrem,
+ rasmol,
+ raster3d,
+ rate4site,
+ raxml,
+ ray,
rdp-alignment,
rdp-classifier,
rdp-readseq,
- readseq [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- relion-bin [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | relion-bin+mpi [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- relion-bin+gui [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | relion-bin+mpi+gui [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ readseq,
+ relion-bin | relion-bin+mpi,
+ relion-bin+gui | relion-bin+mpi+gui,
reprof,
- rna-star [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armhf !ia64 !mips !kfreebsd-i386],
- rnahybrid [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ rna-star,
+ rnahybrid,
rtax,
- saint [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- samtools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !armel !ia64 !kfreebsd-i386],
- scythe [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- seaview [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- seqan-apps [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !armel !ia64 !kfreebsd-i386],
- seqtk [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sibsim4 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sickle [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sigma-align [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sim4 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- smalt [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- snap [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- snp-sites [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- soapdenovo [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- soapdenovo2 [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- squizz [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sra-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ saint,
+ samtools,
+ scythe,
+ seaview,
+ seqan-apps,
+ seqprep,
+ seqtk,
+ sibsim4,
+ sickle,
+ sigma-align,
+ sim4,
+ smalt,
+ snap,
+ snp-sites,
+ soapdenovo,
+ soapdenovo2,
+ sortmerna,
+ spread-phy,
+ squizz,
+ sra-toolkit,
ssake,
- staden [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- staden-io-lib-utils [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- subread [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386],
- swarm [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- t-coffee [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tabix [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- theseus [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tigr-glimmer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tm-align [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tophat [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- toppred [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ stacks,
+ staden,
+ staden-io-lib-utils,
+ subread,
+ sumatra,
+ swarm,
+ t-coffee,
+ tabix,
+ tantan,
+ theseus,
+ tigr-glimmer,
+ tm-align,
+ tophat,
+ topp,
+ toppred,
transdecoder,
- transtermhp [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tree-puzzle [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !arm64 !ia64 !kfreebsd-i386] | tree-ppuzzle [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !arm64 !ia64 !kfreebsd-i386],
- treeviewx [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ transtermhp,
+ tree-puzzle | tree-ppuzzle,
+ treeviewx,
trimmomatic,
- uc-echo [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- vcftools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- velvet [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ uc-echo,
+ vcftools,
+ velvet,
velvetoptimiser,
- vsearch [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ vsearch,
wigeon,
- wise [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- zalign [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386]
+ wise,
+ zalign
Suggests: abyss,
acacia,
+ act,
+ adun-core,
adun.app,
amos-assembler,
+ amoscmp,
apollo,
+ arachne,
arb,
+ artemis,
+ asap,
+ augustus,
autodocktools,
axe-demultiplexer,
axparafit,
axpcoords,
bagpipe,
- ballview,
+ bambus,
+ beads,
beast-mcmc,
+ berkeley-express,
biceps,
+ big-blast,
bigsdb,
+ bio-rainbow,
biomaj-watcher,
bitseq,
- blasr,
blat,
blimps-utils,
+ blixem,
+ btk-core,
+ cactus,
+ caftools,
cain,
+ cap3,
+ cdna-db,
cinema,
clonalorigin,
clustalw-mpi,
cluster3,
+ cmap,
+ coalesce,
+ codonw,
+ compclust,
+ contralign,
coot,
+ copycat,
crac,
crossbow,
cufflinks,
cytoscape,
+ daligner,
+ das-proserver,
dazzle,
- ea-utils,
+ decipher,
+ e-hive,
ecell,
eigensoft,
+ elph,
embassy-phylip,
emboss-explorer,
emmax,
emperor,
ensembl,
- express,
+ est-db,
+ estferret,
+ estscan,
+ exalt,
+ excavator,
+ fasta,
fasta3,
fastml2,
- fitgcp,
+ figaro,
+ finex,
+ fluctuate,
forester,
+ forge,
freebayes,
fsa,
- gasic,
+ galaxy,
gassst,
gatk,
+ gbioseq,
+ gbrowse-syn,
+ genemark,
+ genesplicer,
+ genetrack,
+ genezilla,
+ genographer,
+ glimmerhmm,
gmap,
+ gmv,
grabix,
grogui,
gubbins,
haploview,
hawkeye,
+ hexamer,
+ hilbertvisgui,
htqc,
igv,
+ iqtree,
iva,
jaligner,
jbrowse,
+ jigsaw,
+ jstreeview,
kclust,
kempbasu,
khmer,
lagan,
+ lamarc,
logomat-m,
+ lucy,
mach-haplotyper,
mage2tab,
+ maker2,
martj,
maude,
+ maxd,
melting-gui,
meme,
+ mesquite,
+ metarep,
metastudent-data,
metastudent-data-2,
metastudent-data-3,
+ mhap,
+ migrate,
+ minimus,
+ mirbase,
mobyle,
mobyle-programs,
mobyle-tutorials,
+ modeller,
molekel,
mosaik-aligner,
mpsqed,
+ msatfinder,
mugsy,
+ mummergpu,
+ mview,
ngila,
ngsqctoolkit,
nw-align,
oases,
obitools,
- openms,
+ obo-edit,
+ oligoarrayaux,
+ omegamap,
+ operondb,
pal2nal,
paml,
+ partigene,
patman,
patristic,
+ pbdagcon,
pcma,
+ pfaat,
+ pftools,
+ phagefinder,
+ phpphylotree,
+ phylographer,
phyloviz-core,
+ phylowin,
plato,
plip,
profit,
prokka,
+ prot4est,
pscan-tfbs,
psipred,
+ pyrophosphate-tools,
+ python-kineticstools,
+ python-orange,
+ python-pbalign,
python-reaper,
+ qtlcart,
r-bioc-ebseq,
- r-bioc-genefilter,
r-cran-boolnet,
+ r-cran-metamix,
r-other-apmswapp,
r-other-valdar-bagphenotype.library,
r8s,
raccoon,
+ rbs-finder,
+ recombine,
+ repeatmasker,
+ repeatmasker-recon,
+ rmblast,
+ roche454ace2caf,
+ rose,
rosetta,
rsem,
sap,
seq-gen,
- seqprep,
sequenceconverter.app,
sga,
sift,
situs,
smrtanalysis,
snpeff,
- sortmerna,
spades,
- spread-phy,
+ spice,
+ splitstree,
ssaha,
- stacks,
strap,
strap-base,
suitename,
- sumatra,
sumtrees,
tacg,
- tantan,
+ taverna,
+ taxinspector,
+ tetra,
+ tigr-assembler,
tigr-glimmer-mg,
- topp,
+ trace2dbest,
+ tracetuner,
+ treebuilder3d,
+ treetime,
treeview,
trinityrnaseq,
+ tripal,
+ trnascan-se,
+ twain,
ugene,
unc-fish,
+ uniprime,
varscan,
vienna-rna,
vmd,
wgs-assembler,
wgsim,
+ x-tandem-pipeline,
zodiac-zeden
Description: Debian Med micro-biology packages
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences.
Package: med-bio-dev
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: bioperl,
bioperl-run,
- biosquid [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libace-perl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libai-fann-perl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libbambamc-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libbamtools-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ biosquid,
+ libace-perl,
+ libai-fann-perl,
+ libbambamc-dev,
+ libbamtools-dev,
libbio-graphics-perl,
libbio-mage-perl,
libbio-mage-utils-perl,
libbio-primerdesigner-perl,
- libbiococoa-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ libbiococoa-dev,
libbiojava-java,
libbiojava3-java,
libbiojava4-java,
libchado-perl,
- libffindex0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libfreecontact-perl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libfreecontact0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libgenome-1.3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ libdivsufsort-dev,
+ libffindex0-dev,
+ libfreecontact-perl,
+ libfreecontact0-dev,
+ libgenome-1.3-dev,
libgenome-model-tools-music-perl,
libgenome-perl,
- libgenometools0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ libgenometools0-dev,
libgo-perl,
- libhmsbeagle-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libhts-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armhf !ia64 !mips !kfreebsd-i386],
+ libhmsbeagle-dev,
+ libhts-dev,
libjebl2-java,
- libkmer-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libmems-1.6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libmuscle-3.7-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libncbi6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ libkmer-dev,
+ libmems-1.6-dev,
+ libmuscle-3.7-dev,
+ libncbi6-dev,
libnhgri-blastall-perl,
+ libopenms-dev,
libpal-java,
- librcsb-core-wrapper0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ librcsb-core-wrapper0-dev,
librdp-taxonomy-tree-java,
- librelion-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- librg-blast-parser-perl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ librelion-dev,
+ librg-blast-parser-perl,
librg-reprof-bundle-perl,
- librostlab-blast0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- librostlab3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libsbml5-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !ppc64el !sparc !arm64 !ia64 !mips !kfreebsd-i386 !mipsel],
- libsnp-sites1-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libsort-key-top-perl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libsrf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libssm-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libstaden-read-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libtfbs-perl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libvibrant6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libzerg-perl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libzerg0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mcl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- pyfai [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-biom-format [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386] | python3-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-cobra [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-corepywrap [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ librostlab-blast0-dev,
+ librostlab3-dev,
+ libsbml5-dev,
+ libsnp-sites1-dev,
+ libsort-key-top-perl,
+ libsrf-dev,
+ libssm-dev,
+ libstaden-read-dev,
+ libtfbs-perl,
+ libvibrant6-dev,
+ libzerg-perl,
+ libzerg0-dev,
+ mcl,
+ pyfai,
+ python-biom-format,
+ python-biopython | python3-biopython,
+ python-cobra,
+ python-cogent,
+ python-corepywrap,
python-csb | python3-csb,
- python-freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-htseq [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-mmtk [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-rdkit [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ python-freecontact,
+ python-htseq,
+ python-mmtk,
+ python-pbcore,
+ python-pbh5tools,
+ python-pysam,
+ python-rdkit,
python-screed,
- python3-hyphy [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386] | python-hyphy [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ python3-hyphy | python-hyphy,
python3-ruffus | python-ruffus,
- r-bioc-biobase [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ python3-skbio | python-skbio,
+ r-bioc-biobase,
r-cran-genetics,
- r-cran-haplo.stats [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ r-cran-haplo.stats,
ruby-bio,
sbmltoolbox,
seqan-dev
-Suggests: libbio-das-perl,
- libdivsufsort-dev,
+Suggests: bioclipse,
+ libbio-das-perl,
libforester-java,
libfreecontact-doc,
+ libgbfp-dev,
+ libgff-perl,
libgtextutils-dev,
- libopenms-dev,
librostlab-blast-doc,
librostlab-doc,
libswarm2-dev,
libtabixpp,
libvcflib,
+ octace-bioinfo,
python-biopython-doc,
python-biopython-sql | python3-biopython-sql,
+ python-cutadapt,
+ python-dendropy,
python-miso,
- python-pbcore,
- python-pbh5tools,
- python-pysam,
- python3-dendropy | python-dendropy,
- python3-skbio | python-skbio,
+ python3-cutadapt,
+ python3-dendropy,
r-bioc-affy,
- r-bioc-affyio,
- r-bioc-altcdfenvs,
- r-bioc-annotationdbi,
- r-bioc-biocgenerics,
- r-bioc-biomart,
- r-bioc-biovizbase,
- r-bioc-bsgenome,
- r-bioc-genomeinfodb,
- r-bioc-genomicalignments,
- r-bioc-genomicfeatures,
- r-bioc-genomicranges,
- r-bioc-graph,
- r-bioc-hypergraph,
- r-bioc-iranges,
- r-bioc-makecdfenv,
- r-bioc-preprocesscore,
- r-bioc-rsamtools,
- r-bioc-shortread,
- r-bioc-snpstats,
- r-bioc-variantannotation,
- r-bioc-xvector,
r-cran-rocr
Description: Debian Med packages for development of micro-biology applications
This metapackage will install Debian packages which might be helpful
for development of applications for micro-biological research.
Package: med-cloud
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: acedb-other [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- aevol [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+Recommends: acedb-other,
+ aevol,
alien-hunter,
- altree [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- amap-align [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ampliconnoise [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- anfo [!s390 !hurd-i386 !kfreebsd-amd64 !ppc64el !sparc !arm64 !ia64 !kfreebsd-i386],
- aragorn [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- arden [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- autodock [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- autodock-vina [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- autogrid [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- bamtools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- bedtools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ altree,
+ amap-align,
+ ampliconnoise,
+ anfo,
+ aragorn,
+ arden,
+ autodock,
+ autodock-vina,
+ autogrid,
+ bamtools,
+ bedtools,
biomaj,
bioperl,
bioperl-run,
- biosquid [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- blast2 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- bowtie [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- bowtie2 [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- boxshade [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- bwa [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ biosquid,
+ blast2,
+ bowtie,
+ bowtie2,
+ boxshade,
+ bwa,
cain,
- cassiopee [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- cd-hit [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- cdbfasta [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ cassiopee,
+ cd-hit,
+ cdbfasta,
circos,
- clearcut [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- clonalframe [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- clustalo [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- clustalw [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- concavity [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- conservation-code,
- datamash [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dialign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dialign-tx [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- discosnp [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- disulfinder [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dnaclust [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dssp [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- embassy-domainatrix [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- embassy-domalign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- embassy-domsearch [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- emboss [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- exonerate [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- fastdnaml [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- fastlink [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ clearcut,
+ clonalframe,
+ concavity,
+ datamash,
+ discosnp,
+ disulfinder,
+ dnaclust,
+ dssp,
+ fastdnaml,
+ fastlink,
fastqc,
- fasttree [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- fastx-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- filo [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- flexbar [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- genometools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gff2aplot [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gff2ps,
- giira [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- glam2 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ fasttree,
+ fastx-toolkit,
+ filo,
+ fitgcp,
+ flexbar,
+ freecontact,
+ gasic,
+ genometools,
+ giira,
grinder,
- gromacs [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- hhsuite [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- hmmer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- idba [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- infernal [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- jellyfish [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- kalign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- kissplice [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- last-align [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- loki [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- macs [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mafft [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mapsembler2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- maq [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- melting [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- minia [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ idba,
+ infernal,
+ kissplice,
+ last-align,
+ loki,
+ macs,
+ mapsembler2,
+ maq,
+ melting,
+ minia,
mipe,
- mira-assembler [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mlv-smile [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mothur [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- mrbayes [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mummer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- muscle [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mustang [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncbi-epcr [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncbi-tools-bin [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ncoils [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- neobio,
- paraclu [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- parsinsert [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- pdb2pqr [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- perm [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- phyml [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- phyutility [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ mira-assembler,
+ mothur,
+ ncbi-epcr,
+ ncbi-tools-bin,
+ ncoils,
+ parsinsert,
+ perm,
+ phyml,
+ phyutility,
picard-tools,
- plink [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- poa [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- prank [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- prime-phylo [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
- primer3 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- probabel [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386],
- probcons [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- proda [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- prodigal [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !armhf !ia64 !kfreebsd-i386],
- pynast,
- python-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python3-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- qiime [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-bioc-edger [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-bioc-hilbertvis [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-pvclust,
- r-cran-qtl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-vegan [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-other-mott-happy.hbrem [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- raster3d [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- readseq [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- rnahybrid [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ plink,
+ primer3,
+ python-cogent,
+ rnahybrid,
rtax,
- samtools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !armel !ia64 !kfreebsd-i386],
- seqan-apps [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !armel !ia64 !kfreebsd-i386],
- sibsim4 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sigma-align [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sim4 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- smalt [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- snap [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- soapdenovo [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- soapdenovo2 [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- squizz [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sra-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ samtools,
+ smalt,
ssake,
- staden-io-lib-utils [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- t-coffee [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tabix [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- theseus [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tigr-glimmer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- tophat [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- tree-puzzle [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !arm64 !ia64 !kfreebsd-i386] | tree-ppuzzle [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !arm64 !ia64 !kfreebsd-i386],
- vcftools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- velvet [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- wise [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- zalign [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386]
+ tophat,
+ velvet
Suggests: abyss,
bagpipe,
- cufflinks,
- embassy-phylip,
- fitgcp,
- gasic,
- gmap,
- r-other-valdar-bagphenotype.library
+ cufflinks
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
@@ -734,47 +758,46 @@ Description: Debian Med bioinformatics applications usable in cloud computing
in cloud computing clusters, where space can be limited.
Package: med-data
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: freediams [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+Recommends: freediams,
freemedforms-freedata,
python-hl7
+Suggests: drugref.org
Description: Debian Med drug databases
This metapackage will install free drug databases and related
applications. The database can be accessed by any EMR using
the application.
Package: med-dental
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: imagetooth,
+Recommends: entangle,
+ imagetooth,
openmolar
-Suggests: entangle
Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
which might be helpful for dentists to manage their practice.
Package: med-epi
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: epigrass,
r-cran-diagnosismed,
- r-cran-epi [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-epibasix [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ r-cran-epi,
+ r-cran-epibasix,
r-cran-epicalc,
r-cran-epir,
r-cran-epitools,
- r-cran-surveillance [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
+ r-cran-seroincidence,
+ r-cran-surveillance
Suggests: netepi-analysis,
netepi-collection,
r-cran-msm,
- r-cran-seroincidence,
+ repast,
ushahidi
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
@@ -784,16 +807,21 @@ Description: Debian Med epidemiology related packages
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
Package: med-his
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: fis-gtm
Suggests: care2x,
ewd-920,
+ hkma-cms,
+ ipath,
+ openeyes,
openmrs,
+ oscar-mcmaster,
+ patientos,
tryton-modules-health,
- vista-foia
+ vista-foia,
+ world-vista
Description: Debian Med suggestions for Hospital Information Systems
This metapackage contains dependencies for software and that could
be useful ro run a Hospital Information System. While there is
@@ -802,43 +830,49 @@ Description: Debian Med suggestions for Hospital Information Systems
anyway.
Package: med-imaging
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: aeskulap [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- amide [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- biosig-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- caret [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- conquest-common [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ctn [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- ctsim [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dcmtk [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dicom3tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- dicomnifti [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+Recommends: aeskulap,
+ amide,
+ ants,
+ biosig-tools,
+ camitk-imp,
+ caret,
+ conquest-common,
+ ctn,
+ ctsim,
+ dcmtk,
+ dicom3tools,
+ dicomnifti,
dicomscope,
- fslview [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gdf-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gwyddion [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ fslview,
+ gdf-tools,
+ ginkgocadx,
+ gofigure2,
+ gwyddion,
imagej,
- imagevis3d [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ imagevis3d,
invesalius,
+ ismrmrd-tools,
+ itksnap,
king,
- libgdcm-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- medcon [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mia-tools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- mia-viewit [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- mialmpick [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- minc-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mriconvert [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- mricron [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !ppc64el !sparc !arm64 !ia64 !mips !kfreebsd-i386 !mipsel],
- mrtrix [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- nifti-bin [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- odin [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- openslide-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- orthanc [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !ia64 !kfreebsd-i386],
+ libgdcm-tools,
+ medcon,
+ mia-tools,
+ mia-viewit,
+ mialmpick,
+ minc-tools,
+ mriconvert,
+ mricron,
+ mrtrix,
+ nifti-bin,
+ odin,
+ openmeeg-tools,
+ openslide-tools,
+ orthanc,
pixelmed-apps,
- plastimatch [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ plastimatch,
python-dicom,
python-dipy,
python-mvpa2,
@@ -847,17 +881,18 @@ Recommends: aeskulap [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i3
python-nipype,
python-nitime,
python-surfer,
- sigviewer [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- sofa-apps [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- teem-apps [!s390 !hurd-i386 !kfreebsd-amd64 !ppc64el !sparc !arm64 !ia64 !kfreebsd-i386],
- voxbo [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- vtk-dicom-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- xmedcon [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
+ sigviewer,
+ sofa-apps,
+ teem-apps,
+ voxbo,
+ vtk-dicom-tools,
+ xmedcon
Suggests: afni,
- ants,
bioimagesuite,
bioimagexd,
- camitk-imp,
+ blox,
+ brainvisa,
+ cdmedicpacs,
cellprofiler,
cmtk,
connectomeviewer,
@@ -866,38 +901,68 @@ Suggests: afni,
conquest-postgres,
conquest-sqlite,
crea,
+ dcm4chee,
+ devide,
+ dicom4j,
dicoogle,
+ drjekyll,
+ dti-query,
+ dtitk,
+ ecg2png,
+ eeglab,
elastix,
+ fiji,
+ freesurfer,
fsl,
- ginkgocadx,
- gofigure2,
+ gimias,
+ hid,
imagemagick,
imview,
+ incf-nidash-oneclick-clients,
insightapplications,
- ismrmrd-tools,
- itksnap,
+ isis,
+ jemris,
jist,
kradview,
libdcm4che-java,
+ lipsia,
+ maris,
mayam,
+ medisnap,
+ mesa-test-tools,
micromanager,
mipav,
+ miview,
+ mni-autoreg,
mni-colin27-nifti,
+ mni-icbm152-nlin-2009,
+ mni-n3,
+ mrisim,
+ omero,
+ opendicom.net,
openelectrophy,
- openmeeg-tools,
+ opensourcepacs,
openwalnut-qt4,
orthanc-webviewer,
paraview,
+ piano,
pngquant,
+ pymeg,
python-pyxid,
+ slicer,
+ stabilitycalc,
+ stir,
+ tempo,
tifffile,
trimage,
via-bin,
+ visit,
vmtk,
- volview
-Description: Debian Med imaging packages
+ volview,
+ xnat
+Description: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
- medical image processing.
+ medical image processing and visualization.
.
It installs several packages supporting DICOM (Digital Imaging and
Communications in Medicine) which is the de-facto standard for medical
@@ -915,46 +980,49 @@ Description: Debian Med imaging packages
ftp://medical.nema.org/medical/dicom/2008/ .
Package: med-imaging-dev
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: cimg-dev,
- ctn-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gmic [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libactiviz.net-cil [!s390 !hurd-i386 !kfreebsd-amd64 !ppc64el !sparc !arm64 !ia64 !mips !kfreebsd-i386],
- libbiosig-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libcv-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libedf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libgdf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libgiftiio-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libinsighttoolkit3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386] | libinsighttoolkit4-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- libismrmrd-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libmaxflow-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libmdc2-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libmia-2.2-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- libmialm-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libmiaviewit-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- libminc-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libnifti-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libopenslide-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libpapyrus3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libteem-dev [!s390 !hurd-i386 !kfreebsd-amd64 !ppc64el !sparc !arm64 !ia64 !kfreebsd-i386],
- libvigraimpex-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libvistaio-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libvolpack1-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libvtk-dicom-java [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libvtk-dicom0.5-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libvtk5-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- libvxl1-dev [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- octave-gdf [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- odin [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-casmoothing [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ ctn-dev,
+ gmic,
+ libactiviz.net-cil,
+ libbiosig-dev,
+ libcamitk3-dev,
+ libcv-dev,
+ libedf-dev,
+ libgdcm2-dev,
+ libgdf-dev,
+ libgiftiio-dev,
+ libigstk4-dev,
+ libinsighttoolkit3-dev | libinsighttoolkit4-dev,
+ libismrmrd-dev,
+ libmaxflow-dev,
+ libmdc2-dev,
+ libmia-2.2-dev,
+ libmialm-dev,
+ libmiaviewit-dev,
+ libminc-dev,
+ libnifti-dev,
+ libopenmeeg-dev,
+ libopenslide-dev,
+ libpapyrus3-dev,
+ libteem-dev,
+ libvigraimpex-dev,
+ libvistaio-dev,
+ libvolpack1-dev,
+ libvtk-dicom-java,
+ libvtk-dicom0.5-dev,
+ libvtk5-dev,
+ libvxl1-dev,
+ octave-gdf,
+ odin,
+ python-casmoothing,
python-cfflib,
python-dicom,
python-dipy,
- python-gdcm [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- python-mia [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel] | python3-mia [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
+ python-gdcm,
+ python-mia | python3-mia,
python-mne,
python-mvpa2,
python-nibabel,
@@ -963,20 +1031,19 @@ Recommends: cimg-dev,
python-nitime,
python-openslide,
python-pyxnat,
- python-vigra [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-rniftilib [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
-Suggests: igstk-examples,
+ python-vigra,
+ r-cran-rniftilib
+Suggests: emokit,
+ igstk-examples,
insighttoolkit3-examples,
libbio-formats-java,
- libcamitk3-dev,
libctk-dev,
libeegdev-dev,
libics-dev,
- libigstk4-dev,
liblimereg-dev,
+ libmni-perllib-perl,
libnifti-doc,
libopenigtlink1-dev,
- libopenmeeg-dev,
libopenslide-java,
libopensurgsim-dev,
libvia-dev,
@@ -984,61 +1051,65 @@ Suggests: igstk-examples,
libvtk5.4,
libvtkedge-dev,
libxdffileio-dev,
+ octave-dicom,
python-imageio,
python-libavg,
python-tifffile,
python-vmtk
-Description: Debian Med packages for medical image development
+Description: Debian Med image processing and visualization packages development
This metapackage will install Debian packages which might be useful
- for developing applications for medical image processing.
+ for developing applications for medical image processing and
+ visualization.
Package: med-laboratory
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: opencfu [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
+Recommends: opencfu
+Suggests: catissuesuite,
+ openelis,
+ openfreezer
Description: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
be useful ro run a medical laboratory.
Package: med-oncology
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: dicompyler
-Suggests: uw-prism
+Suggests: planunc,
+ uw-prism
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
oncology.
Package: med-pharmacy
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: chemtool [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
-Suggests: r-cran-dosefinding,
- raccoon
+Recommends: chemtool,
+ r-cran-dosefinding
+Suggests: raccoon
Description: Debian Med packages for pharmaceutical research
This metapackage contains dependencies for a
collection of software and documentation which is useful for
pharmaceutical research.
Package: med-physics
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: biosig-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gdf-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- octave [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- paw [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !arm64 !ia64 !kfreebsd-i386],
- paw++ [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !arm64 !ia64 !kfreebsd-i386],
+Recommends: biosig-tools,
+ gdf-tools,
+ octave,
+ paw,
+ paw++,
r-base
-Suggests: libbiosig-dev,
+Suggests: gate,
+ libbiosig-dev,
octave-biosig,
+ openvibe,
paw-demos,
python-biosig,
python-multipletau
@@ -1049,39 +1120,58 @@ Description: Debian Med packages for medical physicists
and related fields.
Package: med-practice
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: freediams [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- freemedforms-emr [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- gnumed-client,
- gnumed-server,
- libchipcard-tools [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- qrisk2 [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-medadherence [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
-Suggests: clinica,
+Recommends: clinica,
entangle,
+ freediams,
+ freemedforms-emr,
ginkgocadx,
+ gnumed-client,
+ gnumed-server,
+ libchipcard-tools,
+ qrisk2,
+ r-cran-medadherence
+Suggests: clearhealth,
+ elementalclinic,
+ elexis,
+ freeb,
+ freemed,
+ freeshim,
libctapimkt1,
+ medintux,
+ mirrormed,
+ mirth,
openemr,
- thera-pi
+ openpms,
+ openrep,
+ proteus,
+ remitt,
+ resmedicinae,
+ sqlclinic,
+ thera-pi,
+ tinyheb
Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
which might be helpful for practitioners to manage their practice.
Package: med-psychology
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: praat [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- psignifit [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+Recommends: praat,
+ psignifit,
psychopy,
- python-pyepl [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-cran-foreign [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ python-pyepl,
+ r-cran-foreign,
r-cran-psy
-Suggests: python-pypsignifit,
+Suggests: miscpsycho,
+ psych,
+ psychometric,
+ psychotree,
+ psyphy,
+ python-pypsignifit,
python-visionegg,
science-psychophysics
Description: Debian Med packages for psychology
@@ -1089,49 +1179,46 @@ Description: Debian Med packages for psychology
which might be helpful for psychological research.
Package: med-rehabilitation
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: sitplus [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
+Recommends: sitplus
Suggests: aghermann
Description: Debian Med packages for rehabilitation technologies
This metapackage will install tools that are useful for
rehabilitation and therapy.
Package: med-statistics
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: r-bioc-edger [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
- r-bioc-limma [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+Recommends: r-bioc-edger,
+ r-bioc-limma,
r-bioc-qvalue,
+ r-cran-beeswarm,
r-cran-pvclust,
- r-cran-randomforest [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
-Suggests: r-cran-beeswarm,
- science-statistics
+ r-cran-randomforest
+Suggests: science-statistics
Description: Debian Med statistics
This metapackage will install packages which are helpful to do statistics
with a special focus on tasks in medical care.
Package: med-tools
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: cronometer,
- edfbrowser [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ edfbrowser,
hunspell-de-med,
hunspell-en-med,
- nut-nutrition [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ nut-nutrition,
pcalendar,
pondus,
- python-clips [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ python-clips,
python-fitbit,
- quitcount [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386],
+ quitcount,
wgerman-medical,
- workrave [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !ia64 !kfreebsd-i386]
+ workrave
Suggests: cycle,
entangle,
goldencheetah,
@@ -1142,9 +1229,8 @@ Description: Debian Med several tools
Currently it contains some simple programs for Personal Health.
Package: med-typesetting
-Architecture: any
-Section: metapackage
-Priority: extra
+Section: metapackages
+Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: king,
texlive-latex-extra,
--
Debian Med metapackages
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