[Blends-commit] [SCM] science branch, master, updated. f10d679c7074b4c61f57af719c989b4afeb4a9bc
Andreas Tille
tille at debian.org
Sun Apr 10 07:58:13 UTC 2016
The following commit has been merged in the master branch:
commit 6d4f42981b67a54b6cfbd2e47766b523c0e6ab38
Author: Andreas Tille <tille at debian.org>
Date: Sun Apr 10 09:49:27 2016 +0200
Regenerate dependencies after setting target release to unstable.
diff --git a/debian-science-tasks.desc b/debian-science-tasks.desc
index 9d034e7..7e58ccd 100644
--- a/debian-science-tasks.desc
+++ b/debian-science-tasks.desc
@@ -1,5 +1,5 @@
Task: debian-science
-Relevance: 9
+Relevance: 7
Section: debian-science
Description: Debian Science Pure Blend
.
@@ -19,6 +19,7 @@ Description: Debian Science Brain-computer interface packages
presentation, data collection and analysis software which could be
found in science-neuroscience-cognitive, science-dataacquisition,
data-machine-learning metapackages.
+Test-new-install: mark show
Task: science-biology
Parent: debian-science
@@ -33,6 +34,7 @@ Description: Debian Science Biology packages
you are most probably interested in the Debian Med project which
deals with biology and medicine in much more detail then the more
general Debian Science.
+Test-new-install: mark show
Key:
science-biology
@@ -44,6 +46,7 @@ Description: Debian Science Chemistry packages
Chemistry. You might also be interested in the field::chemistry
debtag and, depending on your focus, in the education-chemistry
metapackage.
+Test-new-install: mark show
Key:
science-chemistry
@@ -54,6 +57,7 @@ Description: Debian Science data acquisition packages
This metapackage will install Debian Science packages related to data
acquisition. This might be used in several sciences (as for instance
science-viewing and science-typesetting).
+Test-new-install: mark show
Key:
science-dataacquisition
@@ -64,6 +68,7 @@ Description: Debian Science data acquisition development packages
This metapackage will install Debian Science packages which are helpful
to develop applications related to data acquisition. This might be
used in several sciences.
+Test-new-install: mark show
Key:
science-dataacquisition-dev
@@ -77,6 +82,7 @@ Description: Debian Science specific devices support
.
Note that there is no according metapackage created since the packages
might be to different to make sense to install all on one machine.
+Test-new-install: mark show
Task: science-distributedcomputing
Parent: debian-science
@@ -85,6 +91,7 @@ Description: Debian Science Distributed Computing packages
This metapackage will install Debian Science packages useful for
various types of distributed computing, such as grid-, cloud-, cluster-
and parallel-computing.
+Test-new-install: mark show
Key:
science-distributedcomputing
@@ -98,6 +105,7 @@ Description: Debian Science Economics packages
environments which can solve a wide range of problems typically encountered in
economic research. These environments provide functionalities similar to those
of popular non-free systems (such as MATLAB, Mathematica, Stata or SAS).
+Test-new-install: mark show
Key:
science-economics
@@ -109,6 +117,7 @@ Description: Debian Science Electronics packages
Electronics. You might also be interested in the field::electronics
debtag and, depending on your focus, in the education-electronics
metapackage.
+Test-new-install: mark show
Key:
science-electronics
@@ -124,6 +133,7 @@ Description: Debian Science packages for Electrophysiology
science-statistics, science-imageanalysis, science-numericalcomputation,
med-imaging, and med-imaging-dev metapackages for a variety of additional
software that might be useful for electrophysiology research.
+Test-new-install: mark show
Key:
science-electrophysiology
@@ -137,6 +147,7 @@ Description: Debian Science Engineering packages
Please note that there is an additional package engineering-dev
which depends from packages which are useful to develop engineering
related software.
+Test-new-install: mark show
Key:
science-engineering
@@ -148,6 +159,7 @@ Description: Debian Science Engineering-dev packages
helpful for development of applications for Engineering.
.
You might also be interested in the science-engineering metapackage.
+Test-new-install: mark show
Key:
science-engineering-dev
@@ -157,6 +169,7 @@ Section: debian-science
Description: Debian Science financial engineering and computational finance
This metapackage will install Debian Science packages for financial
engineering and computational finance.
+Test-new-install: mark show
Key:
science-financial
@@ -168,6 +181,7 @@ Description: Debian Science Geography packages
Geography. You might also be interested in the field::geography
debtag and, depending on your focus, in the education-geography
metapackage.
+Test-new-install: mark show
Key:
science-geography
@@ -179,6 +193,7 @@ Description: Debian Science geometry packages
geometry. You might also be interested in the field::mathematics
debtag and, depending on your focus, in the education-mathematics
metapackage.
+Test-new-install: mark show
Key:
science-geometry
@@ -193,6 +208,7 @@ Description: Debian Science High Energy Physics packages
.
You might also be interested in the debtag field::physics and, depending on
your focus, in the physics and education-physics metapackages.
+Test-new-install: mark show
Key:
science-highenergy-physics
@@ -207,6 +223,7 @@ Description: Debian Science High Energy Physics development packages
.
You might also be interested in the debtag field::physics and, depending on
your focus, in the physics and education-physics metapackages.
+Test-new-install: mark show
Key:
science-highenergy-physics-dev
@@ -218,6 +235,7 @@ Description: Debian Science image analysis packages
scientific image acquisition. This might be used in several
sciences (as for instance science-dataacquisition, science-viewing
and science-typesetting).
+Test-new-install: mark show
Key:
science-imageanalysis
@@ -227,6 +245,7 @@ Section: debian-science
Description: Debian Science development of image analysis applications
This metapackage will install Debian Science development libraries to
develop scientific image analysis applications acquisitions.
+Test-new-install: mark show
Key:
science-imageanalysis-dev
@@ -236,6 +255,7 @@ Section: debian-science
Description: Debian Science Linguistics packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Linguistics.
+Test-new-install: mark show
Key:
science-linguistics
@@ -247,6 +267,7 @@ Description: Debian Science Logic packages
and installs packages related to Computational Logic. It contains
formula transformation tools, solvers for formulas specified in
various logics, interactive proof systems, etc.
+Test-new-install: mark show
Key:
science-logic
@@ -258,6 +279,7 @@ Description: Debian Science Machine Learning packages
scientists interested in machine learning. Included packages range
from knowledge-based (expert) inference systems to software
implementing dominant nowadays statistical methods.
+Test-new-install: mark show
Key:
science-machine-learning
@@ -269,6 +291,7 @@ Description: Debian Science Mathematics packages
Mathematics. You might also be interested in the field::mathematics
debtag and, depending on your focus, in the education-mathematics
metapackage.
+Test-new-install: mark show
Key:
science-mathematics
@@ -280,6 +303,7 @@ Description: Debian Science Mathematics-dev packages
helpful for development of applications for Mathematics.
.
You might also be interested in the science-mathematics metapackage.
+Test-new-install: mark show
Key:
science-mathematics-dev
@@ -289,6 +313,7 @@ Section: debian-science
Description: Debian Science Meteorology packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Meteorology and Climate.
+Test-new-install: mark show
Key:
science-meteorology
@@ -300,6 +325,7 @@ Description: Debian Science Meteorology-dev packages
helpful for development of applications for Meteorology and Climate.
.
You might also be interested in the science-meteorology metapackage.
+Test-new-install: mark show
Key:
science-meteorology-dev
@@ -324,6 +350,7 @@ Description: Debian Science Nanoscale Physics packages
.
You might also be interested in the debtag field::physics and, depending on
your focus, in the physics and education-physics metapackages.
+Test-new-install: mark show
Key:
science-nanoscale-physics
@@ -337,6 +364,7 @@ Description: Debian Science Nanoscale Physics development packages
You might also be interested in the debtag field::physics and, depending
on your focus, in the nanoscale-physics, physics and education-physics
metapackages.
+Test-new-install: mark show
Key:
science-nanoscale-physics-dev
@@ -355,6 +383,7 @@ Description: Debian Science packages for Cognitive Neuroscience
science-imageanalysis, science-numericalcomputation, med-imaging, and
med-imaging-dev metapackages for a variety of additional software that
might be useful in the context of cognitive neuroscience.
+Test-new-install: mark show
Key:
science-neuroscience-cognitive
@@ -372,6 +401,7 @@ Description: Debian Science packages for modeling of neural systems
science-numericalcomputation, med-imaging, and med-imaging-dev
metapackages for a variety of additional software that might be
useful for neuroscience research.
+Test-new-install: mark show
Key:
science-neuroscience-modeling
@@ -384,6 +414,7 @@ Description: Debian Science Numerical Computation packages
calculation and visualisation system for scientific computing and
data analysis. These packages are similar to commercial systems such
as Matlab and IDL.
+Test-new-install: mark show
Key:
science-numericalcomputation
@@ -394,6 +425,7 @@ Description: Debian Science Physics packages
This metapackage will install Debian Science packages related to Physics.
You might also be interested in the debtag field::physics and, depending on
your focus, in education-physics metapackage.
+Test-new-install: mark show
Key:
science-physics
@@ -405,6 +437,7 @@ Description: Debian Science Physics-dev packages
helpful for development of applications for Mathematics.
.
You might also be interested in the science-physics metapackage.
+Test-new-install: mark show
Key:
science-physics-dev
@@ -414,6 +447,7 @@ Section: debian-science
Description: Debian Science generic tools for presentations
This metapackage will install Debian Science some packages which are
useful for doing presentations for instance on scientific conferences.
+Test-new-install: mark show
Key:
science-presentation
@@ -431,6 +465,7 @@ Description: Debian Science packages for Psychophysics
domain of application. Additionally look into
science-bci since those often provide a complete loop
frameworks including stimuli delivery.
+Test-new-install: mark show
Key:
science-psychophysics
@@ -442,6 +477,7 @@ Description: Debian Robotics packages
and installs packages related to Robotics.
.
You might also be interested in the science-engineering metapackage.
+Test-new-install: mark show
Key:
science-robotics
@@ -452,6 +488,7 @@ Description: Debian Robotics development packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages that are relevant to develop applications
for robotics.
+Test-new-install: mark show
Key:
science-robotics-dev
@@ -461,6 +498,7 @@ Section: debian-science
Description: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
used to do simulations in different fields of science.
+Test-new-install: mark show
Key:
science-simulations
@@ -470,6 +508,7 @@ Section: debian-science
Description: Debian Science social sciences packages
This metapackage will install Debian Science packages useful for social
sciences.
+Test-new-install: mark show
Key:
science-social
@@ -483,6 +522,7 @@ Description: Debian Science Statistics packages
a lot of R packages as well as from other tools which are useful to
do statistics. Moreover the Science Mathematics task is suggested
to optionally install all mathematics related software.
+Test-new-install: mark show
Key:
science-statistics
@@ -495,6 +535,7 @@ Description: Debian Science generic tools for scientific work
.
Note that there is no according metapackage created since the packages
might be to different to make sense to install all on one machine.
+Test-new-install: mark show
Task: science-typesetting
Parent: debian-science
@@ -503,6 +544,7 @@ Description: Debian Science typesetting packages
This metapackage will install Debian Science packages related to
typesetting. You might also be interested in the use::typesetting
debtag.
+Test-new-install: mark show
Key:
science-typesetting
@@ -513,6 +555,7 @@ Description: Debian Science data visualisation packages
This metapackage will install Debian Science packages related to data
visualization. You might also be interested in the use::viewing
debtag.
+Test-new-install: mark show
Key:
science-viewing
@@ -522,6 +565,7 @@ Section: debian-science
Description: Debian Science development of visualisation applications
This metapackage will install Debian Science packages related to the
development of applications to visualise scientific data.
+Test-new-install: mark show
Key:
science-viewing-dev
diff --git a/debian/changelog b/debian/changelog
index 56349a0..e296267 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-debian-science (1.5) UNRELEASED; urgency=medium
+debian-science (1.5) unstable; urgency=medium
[ Ole Streicher ]
* Replace astronomy and astronomy-dev packages with the metapackages
@@ -216,7 +216,7 @@ debian-science (1.5) UNRELEASED; urgency=medium
* New metapackages:
-science-imageanalysis-dev
- -- Andreas Tille <tille at debian.org> Sun, 29 Mar 2015 21:41:40 +0200
+ -- Andreas Tille <tille at debian.org> Sun, 10 Apr 2016 09:44:18 +0200
debian-science (1.4) unstable; urgency=medium
diff --git a/debian/control b/debian/control
index 2d38fad..b7f9473 100644
--- a/debian/control
+++ b/debian/control
@@ -205,8 +205,7 @@ Package: science-chemistry
Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: adun.app,
- apbs,
+Recommends: apbs,
avogadro,
bkchem,
bodr,
@@ -214,10 +213,8 @@ Recommends: adun.app,
chemical-mime-data,
chemical-structures,
chemtool,
- cp2k,
drawxtl,
easychem,
- freefoam,
gabedit,
galculator,
gamgi,
@@ -248,7 +245,6 @@ Recommends: adun.app,
psi3,
pyfai,
pymol,
- python-mmtk,
python-mzml,
python-openbabel,
qutemol,
@@ -259,13 +255,17 @@ Recommends: adun.app,
xbs,
xdrawchem,
xmakemol-gl | xmakemol
-Suggests: fdmnes,
+Suggests: adun.app,
+ cp2k,
+ fdmnes,
+ freefoam,
gdpc-examples,
libegad,
libint,
molden,
molekel,
openchrom,
+ python-mmtk,
python-mzml-doc,
tinker
Description: Debian Science Chemistry packages
@@ -330,29 +330,29 @@ Package: science-distributedcomputing
Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: dmtcp,
- environment-modules,
+Recommends: environment-modules,
globus-core,
- gridengine-client,
- gridengine-exec,
- gridengine-master,
- gridengine-qmon,
htcondor,
ipython,
mpich,
- mpich2python,
openmpi-bin,
- openmpipython,
- python-mpi,
- python-scoop,
- torque-common,
- torque-server
+ python-scoop
Suggests: coop-computing-tools,
+ dmtcp,
+ gridengine-client,
+ gridengine-exec,
+ gridengine-master,
+ gridengine-qmon,
hpcc,
+ mpich2python,
nordugrid-arc-nox,
octave-mpi,
+ openmpipython,
psom,
- python-mpi4py
+ python-mpi,
+ python-mpi4py,
+ torque-common,
+ torque-server
Description: Debian Science Distributed Computing packages
This metapackage will install Debian Science packages useful for
various types of distributed computing, such as grid-, cloud-, cluster-
@@ -378,7 +378,6 @@ Recommends: dynare,
octave-symbolic,
python-matplotlib,
python-numpy,
- python-pandas,
python-scipy,
python-scitools,
python-simpy,
@@ -414,6 +413,7 @@ Suggests: dolo,
matlab-support,
minsky,
python-econpy,
+ python-pandas,
python-quantecon,
r-cran-ecdat,
r-cran-vars,
@@ -475,10 +475,8 @@ Recommends: arachne-pnr,
qsapecng,
simulpic,
texlive-latex-extra,
- tkgate,
uisp,
verilator,
- visolate,
yosys
Suggests: easyspice,
geda-doc,
@@ -498,8 +496,10 @@ Suggests: easyspice,
libfeel++-dev,
ngspice,
qucs,
+ tkgate,
vbpp,
vbs,
+ visolate,
xsmc-calc
Description: Debian Science Electronics packages
This metapackage will install Debian Science packages related to
@@ -562,41 +562,40 @@ Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version
Recommends: calculix-ccx,
cba,
cgns-convert,
- code-aster,
code-aster-gui,
code-saturne,
- diet-agent,
dime,
eficas,
- feel++-apps,
freecad,
- freefoam,
gerris,
- getdp,
gmsh,
hdfview,
libadios-bin,
librecad,
libsilo-bin,
- netgen,
oce-draw,
python-fiat,
- python-openturns,
python-silo,
pythoncad,
sailcut,
- sfc,
syrthes,
tetgen,
z88
Suggests: ann-tools,
avl,
brlcad,
+ code-aster,
+ diet-agent,
ecs,
+ feel++-apps,
+ freefoam,
+ getdp,
logcentral,
logcentral-tools,
metis-edf,
+ netgen,
pycgns,
+ python-openturns,
r-cran-spc,
salome-gui,
salome-jobmanager,
@@ -605,6 +604,7 @@ Suggests: ann-tools,
salome-paravis,
salome-smesh,
salome-yacs,
+ sfc,
tochnog,
varkon
Description: Debian Science Engineering packages
@@ -631,11 +631,8 @@ Recommends: code-saturne-bin,
libdeal.ii-dev,
libdime-dev,
libdxflib-dev,
- libelmer-dev,
libexodusii-dev,
- libfeel++-dev,
libflann-dev,
- libfreefoam-dev,
libgetfem++-dev,
libhdf5-serial-dev,
libitpp-dev,
@@ -650,19 +647,15 @@ Recommends: code-saturne-bin,
libnlopt-dev,
liboce-ocaf-dev,
liboce-visualization-dev,
- libopenturns-dev,
libplb-dev,
libsilo-dev,
libsis-jhdf5-java,
- libslepc3.4.2-dev,
libslicot-dev,
libug-dev,
libxdmf-dev,
python-collada,
- python-netcdf,
python-pynfft | python3-pynfft,
- r-cran-rnetcdf,
- syfi-dev
+ r-cran-rnetcdf
Suggests: calculix-ccx-doc,
calculix-ccx-test,
ceres-solver-doc,
@@ -670,19 +663,26 @@ Suggests: calculix-ccx-doc,
libdiet-client2.8-dev,
libdiet-dagda2.8-dev,
libdiet-sed2.8-dev,
+ libelmer-dev,
+ libfeel++-dev,
+ libfreefoam-dev,
libgtkdatabox-0.9.2-0-dev,
libgtkdataboxmm-dev,
libluminate-dev,
libmesh-dev,
libmetis-edf-dev,
libnetcdf-java,
+ libopenturns-dev,
libqwt-dev | libqwt5-qt4-dev,
+ libslepc3.4.2-dev,
libtet1.4-dev,
openturns-examples,
pycgns,
python-fftw3,
+ python-netcdf,
python3-fftw3,
- salome-kernel-dev
+ salome-kernel-dev,
+ syfi-dev
Description: Debian Science Engineering-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Engineering.
@@ -751,8 +751,6 @@ Recommends: avce00,
postgis,
proj-bin,
python-mapnik,
- qgis,
- qgis-plugin-grass,
r-cran-mapdata,
r-cran-mapproj,
r-cran-maps,
@@ -767,6 +765,8 @@ Suggests: drawmap,
grace6,
openjump,
php5-mapscript,
+ qgis,
+ qgis-plugin-grass,
sumo
Description: Debian Science Geography packages
This metapackage will install Debian Science packages related to
@@ -779,9 +779,9 @@ Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: carmetal,
- drgeo,
geogebra-kde
-Suggests: libcgal-dev,
+Suggests: drgeo,
+ libcgal-dev,
libgeometry-primitive-perl,
libmath-geometry-voronoi-perl,
octave-geometry,
@@ -804,10 +804,22 @@ Recommends: cernlib,
dzedit,
feynmf,
geant321,
- herwig++,
kuipc,
kxterm,
+ looptools,
+ nypatchy,
+ octave-lhapdf,
+ paw,
+ paw++,
+ pawserv,
+ python-lhapdf,
+ zftp
+Suggests: geant321-doc,
+ geant4,
+ herwig++,
+ lhapdf-pdfsets-minimal,
libroot-bindings-python5.34,
+ libroot-bindings-ruby5.34,
libroot-core5.34,
libroot-geom5.34,
libroot-graf2d-gpad5.34,
@@ -844,20 +856,15 @@ Recommends: cernlib,
libroot-net-bonjour5.34,
libroot-net-ldap5.34,
libroot-net5.34,
+ libroot-proof-clarens5.34,
libroot-proof-proofplayer5.34,
libroot-proof5.34,
libroot-roofit5.34,
libroot-tmva5.34,
libroot-tree-treeplayer5.34,
libroot-tree5.34,
- looptools,
- nypatchy,
- octave-lhapdf,
- paw,
- paw++,
- pawserv,
+ paw-demos,
pythia8-root-interface,
- python-lhapdf,
python-rivet,
rivet,
rivet-plugins,
@@ -885,6 +892,7 @@ Recommends: cernlib,
root-plugin-montecarlo-pythia8,
root-plugin-net-globus,
root-plugin-net-krb5,
+ root-plugin-proof-peac,
root-plugin-sql-mysql,
root-plugin-sql-odbc,
root-plugin-sql-pgsql,
@@ -892,19 +900,11 @@ Recommends: cernlib,
root-system,
root-system-bin,
root-system-common,
+ root-system-doc,
root-system-proofd,
root-system-rootd,
thepeg,
- thepeg-gui,
- zftp
-Suggests: geant321-doc,
- geant4,
- lhapdf-pdfsets-minimal,
- libroot-bindings-ruby5.34,
- libroot-proof-clarens5.34,
- paw-demos,
- root-plugin-proof-peac,
- root-system-doc
+ thepeg-gui
Description: Debian Science High Energy Physics packages
This metapackage will install Debian Science packages related to High Energy
Physics, which is a branch of physics that studies the elementary subatomic
@@ -921,8 +921,20 @@ Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version
Recommends: cernlib-base-dev,
cernlib-core-dev,
fcc,
- herwig++-dev,
libclhep-dev,
+ liblhapdf-dev,
+ libooptools-dev,
+ libsiscone-dev,
+ libsiscone-spherical-dev
+Suggests: ckon,
+ clhep-doc,
+ fastjet-doc,
+ fastjet-examples,
+ hepmc-examples,
+ hepmc-reference-manual,
+ hepmc-user-manual,
+ herwig++-dev,
+ lhapdf-ccwrap-doc,
libfastjet-dev,
libfastjet-fortran-dev,
libfastjetplugins-dev,
@@ -930,11 +942,10 @@ Recommends: cernlib-base-dev,
libhepmc-dev,
libhepmcfio-dev,
libhepmcinterface8-dev,
- liblhapdf-dev,
- libooptools-dev,
libpythia8-dev,
librivet-dev,
libroot-bindings-python-dev,
+ libroot-bindings-ruby-dev,
libroot-core-dev,
libroot-geom-dev,
libroot-graf2d-gpad-dev,
@@ -971,6 +982,7 @@ Recommends: cernlib-base-dev,
libroot-net-bonjour-dev,
libroot-net-dev,
libroot-net-ldap-dev,
+ libroot-proof-clarens-dev,
libroot-proof-dev,
libroot-proof-proofplayer-dev,
libroot-roofit-dev,
@@ -978,23 +990,11 @@ Recommends: cernlib-base-dev,
libroot-tmva-dev,
libroot-tree-dev,
libroot-tree-treeplayer-dev,
- libsiscone-dev,
- libsiscone-spherical-dev,
libthepeg-dev,
- rivet-plugins-dev
-Suggests: ckon,
- clhep-doc,
- fastjet-doc,
- fastjet-examples,
- hepmc-examples,
- hepmc-reference-manual,
- hepmc-user-manual,
- lhapdf-ccwrap-doc,
- libroot-bindings-ruby-dev,
- libroot-proof-clarens-dev,
pythia8-doc-html,
pythia8-doc-worksheet,
pythia8-examples,
+ rivet-plugins-dev,
rivet-plugins-doc,
rivet-reference,
rivet-user-manual,
@@ -1015,13 +1015,13 @@ Package: science-imageanalysis
Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: gpiv,
+Recommends: gwyddion
+Suggests: gpiv,
gpivtools,
- gwyddion,
limereg,
+ python-imageio,
+ scilab-sivp,
teem-apps
-Suggests: python-imageio,
- scilab-sivp
Description: Debian Science image analysis packages
This metapackage will install Debian Science packages related to
scientific image acquisition. This might be used in several
@@ -1034,12 +1034,12 @@ Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: cimg-dev,
libcv-dev,
- liblimereg-dev,
libsimage-dev,
libvigraimpex-dev,
libvlfeat-dev,
python-vigra
Suggests: libfreeimage-dev,
+ liblimereg-dev,
libvisad-java,
python-imageio
Description: Debian Science development of image analysis applications
@@ -1093,7 +1093,6 @@ Recommends: agda,
alt-ergo,
boolector,
clasp,
- coala,
coinor-cbc,
coq,
cvc3,
@@ -1114,6 +1113,7 @@ Recommends: agda,
prover9,
sat4j,
spass
+Suggests: coala
Description: Debian Science Logic packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Computational Logic. It contains
@@ -1132,11 +1132,7 @@ Recommends: autoclass,
libga-dev,
liblinear-dev,
libocas-dev,
- libroot-math-mlp-dev,
- libroot-montecarlo-vmc-dev,
- libroot-tmva-dev,
libshark-dev,
- libshogun-dev,
libsvm-dev,
libtorch3-dev,
libvigraimpex-dev,
@@ -1146,7 +1142,6 @@ Recommends: autoclass,
pgapack,
python-genetic,
python-mdp,
- python-mlpy,
python-mvpa2,
python-opencv,
python-pebl,
@@ -1165,23 +1160,28 @@ Recommends: autoclass,
r-cran-mnp,
r-cran-msm,
r-cran-tgp,
- root-system,
scilab-ann,
vowpal-wabbit,
- weka,
- yap
+ weka
Suggests: ask,
flann,
libacovea-dev,
libcomplearn-dev,
libdlib-dev,
libqsearch-dev,
+ libroot-math-mlp-dev,
+ libroot-montecarlo-vmc-dev,
+ libroot-tmva-dev,
+ libshogun-dev,
lua-torch5,
pybrain,
+ python-mlpy,
python-orange,
+ root-system,
science-numericalcomputation,
science-statistics,
- science-typesetting
+ science-typesetting,
+ yap
Description: Debian Science Machine Learning packages
This metapackage will install Debian packages which might be useful for
scientists interested in machine learning. Included packages range
@@ -1199,13 +1199,9 @@ Recommends: 4ti2,
bliss,
coinor-symphony,
coq,
- dolfin-bin,
eclib-tools,
- feel++-apps,
- fenics,
freefem,
freefem++,
- freefem3d,
freemat,
frobby,
gap,
@@ -1223,7 +1219,6 @@ Recommends: 4ti2,
geogebra,
geomview,
gerris,
- getdp,
ginac-tools,
gmsh,
hol-light,
@@ -1238,7 +1233,6 @@ Recommends: 4ti2,
minisat,
mumps-test,
nauty,
- netgen,
octave,
pari-gp,
polybori,
@@ -1249,7 +1243,6 @@ Recommends: 4ti2,
python-deap,
python-ffc,
python-minieigen,
- python-openturns,
qhull-bin,
qsopt-ex,
regina-normal,
@@ -1258,9 +1251,7 @@ Recommends: 4ti2,
science-statistics,
scilab,
scilab-ann,
- scilab-sivp,
scotch,
- sfc,
singular,
snappea,
tetgen,
@@ -1269,26 +1260,35 @@ Recommends: 4ti2,
xmds2
Suggests: ann-tools,
cliquer,
+ dolfin-bin,
eprover,
+ feel++-apps,
+ fenics,
+ freefem3d,
gap-gapdoc,
gap-io,
gap-online-help,
gap-scscp,
+ getdp,
gmp-ecm,
isabelle,
kseg,
magnus,
matlab-support,
+ netgen,
netgen-doc,
octaviz,
pari-extra,
primesieve,
proofgeneral-coq,
+ python-openturns,
qtoctave,
r-cran-evd,
sagemath,
scilab-scimax,
+ scilab-sivp,
scilab-swt,
+ sfc,
xmds
Description: Debian Science Mathematics packages
This metapackage will install Debian Science packages related to
@@ -1324,7 +1324,6 @@ Recommends: code-saturne-bin,
libdune-grid-dev,
libeigen3-dev,
libeinspline-dev,
- libfeel++-dev,
libfftw3-dev,
libflann-dev,
libfreefem++-dev,
@@ -1334,7 +1333,6 @@ Recommends: code-saturne-bin,
libglpk-dev,
libglpk-java,
libgnuplot-iostream-dev,
- libgsl0-dev,
libhypre-dev,
libigraph0-dev,
libitsol-dev,
@@ -1353,9 +1351,7 @@ Recommends: code-saturne-bin,
libnauty2-dev,
libnewmat10-dev,
libnfft3-dev,
- libnglib-dev,
libopenblas-dev,
- libopenturns-dev,
libplb-dev,
libpolybori-dev,
libpolybori-groebner-dev,
@@ -1366,7 +1362,6 @@ Recommends: code-saturne-bin,
libranlip-dev,
libscscp1-dev,
libscythestat-dev,
- libslepc3.4.2-dev,
libsparskit-dev,
libspooles-dev,
libstxxl-dev,
@@ -1376,25 +1371,18 @@ Recommends: code-saturne-bin,
libug-dev,
libviennacl-dev,
minpack-dev,
- petsc-dev,
- python-dolfin,
python-dtcwt | python3-dtcwt,
python-ferari,
python-ffc,
- python-glpk,
python-linop | python3-linop,
python-numexpr | python3-numexpr,
python-numpy,
python-openopt,
- python-openturns,
python-polybori,
python-pyfftw | python3-pyfftw,
python-pynfft | python3-pynfft,
- python-pyoperators | python3-pyoperators,
- python-pyviennacl,
python-ufc,
python-ufl,
- python3-pyviennacl,
sfftw-dev,
ufc
Suggests: cfortran,
@@ -1407,6 +1395,8 @@ Suggests: cfortran,
libcliquer-dev,
libdune-istl-dev,
libdune-localfunctions-dev,
+ libfeel++-dev,
+ libgsl0-dev,
libitpp-dev,
libjlapack-java,
liblevmar-dev,
@@ -1414,18 +1404,29 @@ Suggests: cfortran,
libmesh-dev,
libmtj-java,
libnetlib-java,
+ libnglib-dev,
libntl-dev,
+ libopenturns-dev,
libparmetis-dev,
libprimesieve5-dev,
libqrupdate-dev,
+ libslepc3.4.2-dev,
libsuitesparse-metis-dev,
libtestu01-0-dev,
libtet1.4-dev,
libtet1.4.2-dev,
libtrilinos-dev,
openturns-examples,
+ petsc-dev,
+ python-dolfin,
python-fftw3,
- python3-fftw3
+ python-glpk,
+ python-openturns,
+ python-pyoperators,
+ python-pyviennacl,
+ python3-fftw3,
+ python3-pyoperators,
+ python3-pyviennacl
Description: Debian Science Mathematics-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Mathematics.
@@ -1439,10 +1440,8 @@ Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version
Recommends: aweather,
cdo,
cmip5-cmor-tables,
- dballe,
ecaccess,
ferret-vis,
- freefoam,
grads,
libdap-bin,
libdap-doc,
@@ -1453,17 +1452,19 @@ Recommends: aweather,
python-cmor,
python-drslib,
python-grib,
- python-netcdf,
python-sphere,
vistrails,
zygrib
-Suggests: geonetwork,
+Suggests: dballe,
+ freefoam,
+ geonetwork,
gerris,
gnudatalanguage,
ncl,
octave-octcdf,
paraview,
python-dap,
+ python-netcdf,
python-openturns,
r-base,
visit
@@ -1483,7 +1484,6 @@ Recommends: fftw-dev,
libemos-dev,
libfftw3-dev,
libfftw3-doc,
- libfreefoam-dev,
libgadap-dev,
libgctp-dev,
libgrib-api-dev,
@@ -1496,7 +1496,6 @@ Recommends: fftw-dev,
liblas-dev,
libnetcdf-dev,
liboasis3-dev,
- libopenturns-dev,
libproj-dev,
librsl-dev,
libsphere-dev,
@@ -1504,7 +1503,6 @@ Recommends: fftw-dev,
libudunits2-dev,
libwreport-dev,
netcdf-bin,
- python-openturns,
r-cran-rnetcdf,
sfftw-dev,
wcslib-dev,
@@ -1512,8 +1510,11 @@ Recommends: fftw-dev,
Suggests: gfortran,
ksh,
libfeel++-dev,
+ libfreefoam-dev,
+ libopenturns-dev,
openturns-examples,
- pkg-config
+ pkg-config,
+ python-openturns
Description: Debian Science Meteorology-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Meteorology and Climate.
@@ -1524,11 +1525,8 @@ Package: science-nanoscale-physics
Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: abinit,
- avogadro,
- cadabra,
+Recommends: avogadro,
cbflib-bin,
- cp2k,
drawxtl,
etsf-io,
feynmf,
@@ -1546,7 +1544,6 @@ Recommends: abinit,
gwyddion,
libblas3,
libfftw3-3,
- libgsl0ldbl,
liblapack3,
mayavi2,
mpqc,
@@ -1558,21 +1555,21 @@ Recommends: abinit,
psi3,
python-ase,
python-lmfit | python3-lmfit,
- python-scientific,
python-scipy,
python-scitools,
python-sympy,
pyxplot,
- quantum-espresso,
science-numericalcomputation,
scilab,
- scilab-sivp,
udav,
v-sim
-Suggests: ape,
+Suggests: abinit,
+ ape,
atompaw,
axiom,
bigdft,
+ cadabra,
+ cp2k,
dx,
dx-doc,
dxsamples,
@@ -1588,6 +1585,7 @@ Suggests: ape,
ifeffit,
libblacs-mpi1,
libgraphviz-perl,
+ libgsl0ldbl,
liblevmar-2-6,
libscalapack-mpi1,
libxc,
@@ -1599,11 +1597,14 @@ Suggests: ape,
pymca,
python-elemental,
python-pygraphviz,
+ python-scientific,
qtiplot,
qtoctave,
+ quantum-espresso,
scidavis,
science-mathematics,
science-statistics,
+ scilab-sivp,
sixpack,
wannier90-1,
wannier90-2
@@ -1630,8 +1631,7 @@ Package: science-nanoscale-physics-dev
Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: abinit-doc,
- gsl-bin,
+Recommends: gsl-bin,
libblacs-mpi-dev,
libblas-dev,
libblas-doc,
@@ -1640,7 +1640,6 @@ Recommends: abinit-doc,
libetsf-io-dev,
libetsf-io-doc,
libfftw3-dev,
- libgsl0-dev,
libhdf5-dev,
liblapack-dev,
liblapack-doc,
@@ -1648,9 +1647,6 @@ Recommends: abinit-doc,
liboce-ocaf-dev,
liboce-visualization-dev,
libopenmpi-dev | libmpich-dev,
- libroot-math-mlp-dev,
- libroot-montecarlo-vmc-dev,
- libroot-tmva-dev,
libscalapack-mpi-dev,
libsis-jhdf5-java,
libssm-dev,
@@ -1659,21 +1655,26 @@ Recommends: abinit-doc,
pyfai,
python-fabio,
r-cran-rnetcdf,
- root-system,
scalapack-doc,
science-mathematics-dev
-Suggests: crystfel-dev,
+Suggests: abinit-doc,
+ crystfel-dev,
gsl-doc-info,
gsl-doc-pdf,
gsl-ref-html,
gsl-ref-psdoc,
libfeel++-dev,
libfftw3-doc,
+ libgsl0-dev,
libpspio-dev,
+ libroot-math-mlp-dev,
+ libroot-montecarlo-vmc-dev,
+ libroot-tmva-dev,
oce-draw,
python-h5py,
python-netcdf,
python-xrayutilities,
+ root-system,
spglib,
wannier90-1-dev
Description: Debian Science Nanoscale Physics development packages
@@ -1691,15 +1692,10 @@ Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version
Recommends: amide,
dicom3tools,
dicomnifti,
- fslview,
- itksnap,
medcon,
minc-tools,
mriconvert,
- mricron,
nifti-bin,
- nifti2dicom,
- openmeeg-tools,
praat,
psignifit,
python-dicom,
@@ -1707,12 +1703,10 @@ Recommends: amide,
python-mvpa2,
python-nibabel,
python-nipy,
- python-nipype,
python-nitime,
python-pyepl,
python-pyxnat,
python-statsmodels,
- qnifti2dicom,
voxbo,
xmedcon
Suggests: afni,
@@ -1725,14 +1719,21 @@ Suggests: afni,
fieldtrip,
freesurfer,
fsl,
+ fslview,
hid,
iqr,
+ itksnap,
lipsia,
mni-autoreg,
mni-n3,
+ mricron,
+ nifti2dicom,
+ openmeeg-tools,
openwalnut-qt4,
pysurfer,
+ python-nipype,
python-pypsignifit,
+ qnifti2dicom,
science-psychophysics,
science-typesetting,
slicer,
@@ -1807,7 +1808,6 @@ Recommends: admesh,
metis,
octave,
pdl,
- python-arrayfire | python3-arrayfire,
python-bitstring | python3-bitstring,
python-csa,
python-deap,
@@ -1826,7 +1826,6 @@ Recommends: admesh,
r-base,
scilab,
scilab-ann,
- scilab-sivp,
spyder,
vitables,
yade,
@@ -1845,11 +1844,14 @@ Suggests: ceres-solver-doc,
octave-sundials,
octavede,
pysph,
+ python-arrayfire,
python-sciscipy,
+ python3-arrayfire,
qtoctave,
scilab-jims,
scilab-metanet,
scilab-scimax,
+ scilab-sivp,
scilab-swt
Description: Debian Science Numerical Computation packages
This metapackage will install Debian Science packages useful for
@@ -1862,28 +1864,20 @@ Package: science-physics
Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: abinit | mpqc | openmx | psi3,
- axiom,
- cadabra,
+Recommends: axiom,
cernlib,
- cp2k,
drawxtl,
etsf-io,
feynmf,
fityk,
- freefoam,
geant321,
gerris,
ghkl,
gpaw,
- gpiv,
- gpivtools,
gwyddion,
- libroot-math-mlp-dev,
- libroot-montecarlo-vmc-dev,
- libroot-tmva-dev,
maxima,
meshlab,
+ mpqc | openmx | psi3,
oce-draw,
opticalraytracer,
paw,
@@ -1891,26 +1885,35 @@ Recommends: abinit | mpqc | openmx | psi3,
pymca,
python-deap,
python-sympy,
- quantum-espresso,
- root-system,
science-electronics,
science-numericalcomputation,
tessa | tessa-mpi,
v-sim
-Suggests: blzpack,
+Suggests: abinit,
+ blzpack,
+ cadabra,
clhep,
+ cp2k,
espresso++,
fdmnes,
feel++-apps,
+ freefoam,
gate,
geant4,
+ gpiv,
+ gpivtools,
horae,
ifeffit,
jfreemesh,
+ libroot-math-mlp-dev,
+ libroot-montecarlo-vmc-dev,
+ libroot-tmva-dev,
octaviz,
openctm-tools,
openfoam,
paw-demos,
+ quantum-espresso,
+ root-system,
science-mathematics,
science-statistics,
scilab-sivp,
@@ -1927,9 +1930,7 @@ Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: fftw-dev,
libasl-dev,
- libfeel++-dev,
libfftw3-dev,
- libfreefoam-dev,
libnfft3-dev,
libopenctm-dev,
libplb-dev,
@@ -1940,7 +1941,9 @@ Recommends: fftw-dev,
python-pynfft | python3-pynfft,
python-quantities,
sfftw-dev
-Suggests: libtriangle-dev,
+Suggests: libfeel++-dev,
+ libfreefoam-dev,
+ libtriangle-dev,
python-fftw3,
python-xrayutilities,
python3-fftw3
@@ -1966,12 +1969,12 @@ Section: metapackages
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: libfreenect-dev,
- octave-psychtoolbox-3,
psychopy,
python-pyepl,
python-pyoptical
Suggests: debruijn,
nrec,
+ octave-psychtoolbox-3,
opensesame,
pebl,
psychlops,
@@ -2054,7 +2057,6 @@ Recommends: libccd-dev,
libode-dev,
libompl-dev,
libopenigtlink-dev,
- libroboptim-core-dev,
libsimbody-dev,
libslicot-dev,
liburdfdom-dev,
@@ -2062,6 +2064,7 @@ Recommends: libccd-dev,
libvisp-dev,
python-comedilib
Suggests: libgazebo5-dev,
+ libroboptim-core-dev,
libsdformat-dev,
visp-images-data
Description: Debian Robotics development packages
@@ -2075,8 +2078,6 @@ Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: calculix-ccx,
esys-particle,
- freefoam,
- getdp,
lammps,
libceres-dev,
liggghts,
@@ -2084,13 +2085,15 @@ Recommends: calculix-ccx,
python-deap,
python-sfepy,
python3-woo | python-woo,
- radiance,
sumo,
yade
Suggests: ceres-solver-doc,
fdmnes,
+ freefoam,
+ getdp,
libopensurgsim-dev,
- pysph
+ pysph,
+ radiance
Description: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
used to do simulations in different fields of science.
@@ -2112,13 +2115,10 @@ Recommends: apophenia-bin,
ess,
littler,
psignifit,
- python-openturns,
- python-pandas,
python-scipy,
python-statsmodels,
r-cran-abind,
r-cran-acepack,
- r-cran-afex,
r-cran-amore,
r-cran-bayesfactor,
r-cran-bayesm,
@@ -2194,7 +2194,6 @@ Recommends: apophenia-bin,
r-cran-quadprog,
r-cran-rcmdr,
r-cran-relimp,
- r-cran-rggobi,
r-cran-rgl,
r-cran-rgtk2,
r-cran-rinside,
@@ -2229,7 +2228,10 @@ Recommends: apophenia-bin,
rkward
Suggests: libapophenia2-dev,
libtamuanova-dev,
+ python-openturns,
+ python-pandas,
python-stats,
+ r-cran-afex,
r-cran-blockmodeling,
r-cran-catools,
r-cran-fastmatch,
@@ -2243,6 +2245,7 @@ Suggests: libapophenia2-dev,
r-cran-nnls,
r-cran-r.oo,
r-cran-r.utils,
+ r-cran-rggobi,
r-cran-rpvm,
r-cran-spc,
rstudio,
@@ -2342,9 +2345,6 @@ Recommends: 3depict,
python-guiqwt,
python-matplotlib-venn | python3-matplotlib-venn,
python-pyqtgraph,
- python-scientific,
- python-seaborn,
- python-viper,
pyxplot,
qtiplot,
scidavis,
@@ -2373,7 +2373,10 @@ Suggests: cassandra,
pgplot5,
python-matplotlib,
python-pivy,
+ python-scientific,
python-scitools,
+ python-seaborn,
+ python-viper,
python-vtk,
r-cran-aplpack,
r-cran-colorspace,
@@ -2411,9 +2414,6 @@ Recommends: gnudatalanguage,
libqtexengine-dev,
libqwtplot3d-qt4-dev,
libsoqt4-dev,
- libvtk-java,
- libvtk5-dev,
- libvtk5-qt4-dev,
libvtk6-dev,
libvtk6-java,
pdl,
@@ -2422,15 +2422,18 @@ Recommends: gnudatalanguage,
python-pivy,
python-plplot-qt,
python-qwt3d-qt4,
- python-scientific,
python-scitools,
+ python-vtk6
+Suggests: libvtk-java,
+ libvtk5-dev,
+ libvtk5-qt4-dev,
+ python-gnuplotlib,
+ python-scientific,
python-vtk,
- python-vtk6,
python3-skimage,
python3-skimage-lib,
tcl-vtk,
vtk-examples
-Suggests: python-gnuplotlib
Description: Debian Science development of visualisation applications
This metapackage will install Debian Science packages related to the
development of applications to visualise scientific data.
--
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