[Blends-commit] [SCM] science branch, master, updated. f10d679c7074b4c61f57af719c989b4afeb4a9bc

[Andreas Tille]

The following commit has been merged in the master branch:
commit 152910387ddea08f156ef6e5f463ba41655c1af9
Author: Andreas Tille <tille at debian.org>
Date:   Sun Apr 10 09:17:08 2016 +0200

    Generated changelog and JSON dependency data using blends-dev 0.7

diff --git a/debian/changelog b/debian/changelog
index 36df8e7..7dd770c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -17,6 +17,141 @@ debian-science (1.5) UNRELEASED; urgency=medium
   [ Sylvestre Ledru ]
   * Remove myself from the uploaders
 
+  * start of automatic changelog entry * 
+  
+  * Changes in metapackage dependencies
+   -science-neuroscience-cognitive
+    added:
+      Depends:  nifti2dicom, qnifti2dicom
+   -science-economics
+    added:
+      Depends:  r-cran-ecdat, r-cran-rsdmx, python-quantecon, r-other-gecon, r-other-bmr, r-cran-vars, recs, x13-arima-seats, minsky
+      Suggests:  science-social
+    removed:
+      Depends:  qtoctave
+   -science-robotics
+    added:
+      Depends:  roslang, python-roscreate, python-rosunit, ros-mk, rosbuild, python-rosmake, python-rosclean, gazebo5, rosbash
+      Suggests:  gnuplot | gnuplot5
+    removed:
+      Depends:  ros, gazebo
+      Suggests:  octovis, gnuplot
+   -science-robotics-dev
+    added:
+      Depends:  libgazebo5-dev, libsimbody-dev, libignition-math2-dev, libignition-transport-dev
+   -science-simulations
+    added:
+      Depends:  python3-woo | python-woo, calculix-ccx, python-sfepy, pysph, libceres-dev
+      Suggests:  ceres-solver-doc, libopensurgsim-dev
+   -science-viewing-dev
+    added:
+      Depends:  python-gnuplotlib
+   -science-tools
+    added:
+      Depends:  cwltool, snakemake, python-h5py | python3-h5py, python-hdf5storage | python3-hdf5storage
+      Suggests:  libmemtailor-dev
+   -science-linguistics
+    added:
+      Depends:  apertium-lex-tools, cg3, libcld2-dev
+      Suggests:  apertium-en-ca, apertium-dan, apertium-es-pt, apertium-dan-nor, apertium-cat, apertium-fra, apertium-nno, apertium-fra-cat, apertium-br-fr, apertium-eu-es, apertium-fr-ca, apertium-en-es, apertium-oc-ca, apertium-pt-gl, apertium-swe-dan, apertium-af-nl, apertium-fr-es, apertium-apy, apertium-nob, apertium-eo-ca, apertium-pt-ca, apertium-nno-nob, apertium-es-gl, libcg3-dev, apertium-swe, apertium-es-ro, apertium-eo-es, apertium-oc-es, apertium-cy-en, apertium-es-ca
+   -science-statistics
+    added:
+      Depends:  apophenia-bin, r-cran-contfrac, r-cran-coin, r-cran-logspline, r-cran-hypergeo, r-cran-conting, r-cran-bayesfactor, r-cran-rsdmx, r-cran-modeltools, r-cran-vcdextra, r-cran-desolve, r-cran-elliptic, r-cran-rinside, r-cran-estimability, r-cran-afex, r-cran-bms, r-cran-pbivnorm, r-cran-lsmeans, r-cran-pbapply
+      Suggests:  r-cran-fastmatch, r-cran-r.utils, r-cran-blockmodeling, r-cran-futile.logger, r-cran-nnls, r-cran-catools, r-cran-lambda.r, libapophenia2-dev, r-cran-futile.options, r-cran-r.oo, r-cran-igraph, r-cran-magrittr
+   -science-imageanalysis
+    added:
+      Depends:  python-imageio, limereg
+    removed:
+      Depends:  libcv-dev
+      Suggests:  libsimage-dev, libvigraimpex-dev, python-vigra, libvlfeat-dev, cimg-dev, libvisad-java
+   -science-machine-learning
+    added:
+      Suggests:  libdlib-dev
+    removed:
+      Depends:  python-pyke
+   -science-mathematics-dev
+    added:
+      Depends:  libplb-dev, libmathic-dev, libfrobby-dev, libnauty2-dev, python-dtcwt | python3-dtcwt, python-cylp, libprimesieve5-dev, python-pyfftw | python3-pyfftw, libsymmetrica2-dev, libmpfi-dev, libecm-dev, libqsopt-ex-dev, libmathicgb-dev
+      Suggests:  libtestu01-0-dev, jsurf-alggeo
+    removed:
+      Suggests:  libnauty-dev, libntl-dev, libcliquer-dev
+   -science-highenergy-physics-dev
+    added:
+      Suggests:  ckon
+   -science-mathematics
+    added:
+      Depends:  mathicgb, singular, surf-alggeo, qsopt-ex, normaliz, graphviz, frobby, geneagrapher, auto-07p, 4ti2
+      Recommends:  gap-openmath, gap-grape
+      Suggests:  gap-io, gmp-ecm, gap-scscp, primesieve
+    removed:
+      Suggests:  cliquer
+   -science-electronics
+    added:
+      Depends:  fpga-icestorm, arachne-pnr, graywolf
+   -science-numericalcomputation
+    added:
+      Depends:  python3-woo | python-woo, python-sfepy, geneva, libopengm-dev, libceres-dev, iep, qsopt-ex, easea, libclblas-dev, calculix-ccx, libarrayfire-unified-dev, pysph, python-bitstring | python3-bitstring, python-arrayfire | python3-arrayfire, libcompute-dev, libqsopt-ex-dev, libclfft-dev
+      Suggests:  ceres-solver-doc
+   -science-typesetting
+    added:
+      Depends:  gummi
+   -science-engineering-dev
+    added:
+      Depends:  libplb-dev, python-pynfft | python3-pynfft, libsis-jhdf5-java, libceres-dev
+      Suggests:  ceres-solver-doc, calculix-ccx-test, calculix-ccx-doc
+    removed:
+      Depends:  python-nfft3 | python3-nfft3
+   -science-viewing
+    added:
+      Depends:  python-matplotlib-venn | python3-matplotlib-venn, gnuplot | gnuplot5
+      Suggests:  r-cran-vioplot
+    removed:
+      Depends:  gnuplot
+   -science-astronomy-dev
+    added:
+      Depends:  astro-java, astro-development, astro-python, astro-python3, astro-tcltk
+    removed:
+      Depends:  libnova-dev, python-pyfits, libgyoto1-dev, libstarlink-pal-dev, python-healpy, python-astropy-legacy, libcfitsio3-dev, libastro-fits-cfitsio-perl, libwcstools-dev, liberfa-dev, tcl-fitstcl, libcpl-dev, libivoafits-java, python-pywcs, libccfits-dev, slang-cfitsio, libfits-java, python-cpl, libchealpix-dev, libstarlink-ast-dev, libhealipx-cxx-dev, libworldwind-java, casacore-dev, libqfits-dev, wcslib-dev
+   -science-astronomy
+    added:
+      Depends:  astro-catalogs, astro-gdl, astro-viewers, astro-education, astro-tools, astro-python, astro-datareduction, astro-publication, astro-python3, astro-frameworks, astro-telescopecontrol, astro-simulation
+    removed:
+      Depends:  gpredict, predict, sncosmo, gliese, python-pyfits, astronomical-almanac, boinc-app-seti, seesat5, eso-midas, audela, x11iraf, yorick-full, boinc-app-milkyway, worldwind, python3-pyfits, celestia, xplanet-images, lightspeed, splash, xorsa, savi, wcslib-tools, gcx, orbfit, sextractor, ftools-fv, astroquery, linoccult, kstars, python3-astropy, xplanet, casacore-tools, python-pywcs, iraf, fitscheck, xephem, python-cpl, spacechart, openuniverse, fitsverify, ssystem, wxastrocapture, saods9, qfits-tools, python-astropy, wcstools, xpa-tools, astroml, starplot, lynkeos.app, skycat, stellarium, python-pyds9, yale, funtools, python-pyraf, esorex, stardata-common, gyoto
+      Suggests:  cpl-plugin-uves, yorick-cubeview, cpl-plugin-fors, pgplot5, cpl-plugin-xsh, cpl-plugin-giraf, yorick-spydr, xtide, xtide-data, cpl-plugin-hawki, python-scientific, yorick-yao, stars, sunclock, scilab-celestlab, cpl-plugin-amber, cpl-plugin-kmos, yorick-gyoto, cpl-plugin-vimos, cpl-plugin-sinfo, pdl, yorick-mira, scilab-scimysql, scilab-overload, yorick-svipc, python-healpy
+      Ignore:  gstar
+   -science-physics-dev
+    added:
+      Depends:  libplb-dev, libasl-dev, python-pyfftw | python3-pyfftw
+    removed:
+      Depends:  libismrmrd-dev
+   -science-distributedcomputing
+    added:
+      Depends:  python-scoop
+   -science-nanoscale-physics-dev
+    added:
+      Depends:  wannier90-1-dev, libpspio-dev, libclipper-dev, libsis-jhdf5-java
+      Recommends:  libhdf5-dev
+      Suggests:  python-h5py
+    removed:
+      Depends:  libfox95, libxc, fftw-dev, libnbc, libtrilinos-dev, libpspio, sfftw-dev, wannier90-dev, libtrilinos-doc
+   -science-physics
+    added:
+      Depends:  gpaw
+   -science-engineering
+    added:
+      Depends:  calculix-ccx
+   -science-nanoscale-physics
+    added:
+      Depends:  libxc, scilab-sivp, liblevmar-2-6, gnuplot | gnuplot5, scilab, wannier90-2, wannier90-1
+      Recommends:  ncview, nco
+      Suggests:  pymca, libgraphviz-perl, hdf5-helpers, python-pygraphviz, openmpi-doc | mpich-doc, netcdf-doc, maxima, dxsamples, axiom, hdf5-tools
+    removed:
+      Depends:  wannier90, gnuplot, pymca, crystfel, espresso++, nco, netcdf-doc, ncview
+      Recommends:  axiom, maxima
+      Suggests:  openmpi-doc | mpich-doc | lam-mpidoc, scilab-sivp, gmsh
+  * New metapackages:
+   -science-imageanalysis-dev
+
  -- Andreas Tille <tille at debian.org>  Sun, 29 Mar 2015 21:41:40 +0200
 
 debian-science (1.4) unstable; urgency=medium
diff --git a/dependency_data/debian-science_1.5.json b/dependency_data/debian-science_1.5.json
new file mode 100644
index 0000000..6999b2c
--- /dev/null
+++ b/dependency_data/debian-science_1.5.json
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting", "science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer", "xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit", "amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin", "python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2", "python-nipy", "python-nipype", "python-nitime", "python-dipy", "openwalnut-qt4", "nifti2dicom", "qnifti2dicom", "caret", "python-pyepl", "praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron", "itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr", "mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology": {"ignore": [], "suggests": ["paraview", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python-openturns", "python-dap"], "depends": ["cdo", "nco", "dballe", "zygrib", "ncview", "grads", "ferret-vis", "magics++", "freefoam", "visit", "libgrib-api-tools", "ecaccess", "geonetwork", "ncl", "python-netcdf", "python-grib", "python-drslib", "python-cmor", "python-sphere", "cmip5-cmor-tables", "aweather", "libdap-bin", "libdap-doc", "vistrails"], "recommends": [], "avoid": []}, "financial": {"ignore": [], "suggests": [], "depends": ["r-cran-fasianoptions", "r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeseries", "r-cran-fportfolio"], "recommends": [], "avoid": []}, "robotics": {"ignore": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime", "libvtk5.4", "octave", "gnuplot | gnuplot5"], "depends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros-mk", "rosbuild", "roslang", "rosbash", "python-rosclean", "python-roscreate", "python-rosmake", "python-rosunit", "openrtm", "openhrp", "pcl", "gazebo5", "openrave", "octomap-tools", "octovis"], "recommends": [], "avoid": []}, "robotics-dev": {"ignore": [], "suggests": ["visp-images-data"], "depends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat-dev", "libconsole-bridge-dev", "libcomedi-dev", "python-comedilib", "libccd-dev", "libgazebo5-dev", "libsimbody-dev", "libignition-transport-dev", "libignition-math2-dev"], "recommends": [], "avoid": []}, "highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []}, "electrophysiology": {"ignore": [], "suggests": ["science-neuroscience-modeling", "science-dataacquisition", "spike", "klustakwik", "neurodata", "qrtailab", "stimfit", "trellis-neuro", "relacs", "chronus", "libbiosig-dev", "nspike", "rtxi", "bluespike", "meabench", "mclust", "neo", "python-spykeutils", "python-neo", "pymeg", "libxdffileio-dev", "librtfilter-dev", "libeegdev-dev", "libmcpanel-dev", "eegview", "aghermann", "eeglab", "python-neuroshare", "patchclamp", "spykeview"], "depends": ["openelectrophy", "libgdf-dev", "sigviewer", "libdrawtk-dev"], "recommends": [], "avoid": []}, "simulations": {"ignore": [], "suggests": ["libopensurgsim-dev", "ceres-solver-doc"], "depends": ["sumo", "esys-particle", "lammps", "liggghts", "yade", "python-deap", "freefoam", "getdp", "fdmnes", "radiance", "music-bin", "calculix-ccx", "python-sfepy", "pysph", "python3-woo | python-woo", "libceres-dev"], "recommends": [], "avoid": []}, "neuroscience-datasets": {"ignore": [], "suggests": [], "depends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti", "haxby2001-faceobject", "fsl-harvard-oxford-atlases", "fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas", "fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas", "fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas", "mclaren-rhesus-macaque-atlas", "sri24-atlas"], "recommends": [], "avoid": []}, "viewing-dev": {"ignore": [], "suggests": [], "depends": ["pdl", "gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib", "python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev", "python-gnuplot", "python-gnuplotlib", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev", "libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java", "vtk-examples", "libvtk6-dev", "libvtk6-java", "python-vtk6", "python-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-0.9.2-0-dev", "libeinspline-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt4-dev", "python-qwt3d-qt4", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "libplplot-dev", "python-plplot-qt"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["libmrmpi-dev", "python-mrjob", "libmemtailor-dev"], "depends": ["pegasus-wms", "openstereogram", "xoscope", "python-h5py | python3-h5py", "snakemake", "cwltool", "python-hdf5storage | python3-hdf5storage"], "recommends": [], "avoid": []}, "geography": {"ignore": [], "suggests": ["googleearth-package", "sumo", "grace6"], "depends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", 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-- 
Debian Science Blend