[Blends-commit] [Git][blends-team/med][master] Keep the sequence of packages identical to original table at...
Andreas Tille
gitlab at salsa.debian.org
Sat Jun 6 06:19:51 BST 2020
Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
84b7dfeb by Andreas Tille at 2020-06-06T07:19:07+02:00
Keep the sequence of packages identical to original table at https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?ts=5eb957ba#gid=543782716
- - - - -
2 changed files:
- covid-19_doc/bio_covid-19_dependencies_query
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_query
=====================================
@@ -64,146 +64,152 @@ echo >> "$output"
psql --quiet $SERVICE >>"$output" <<EOT
BEGIN;
-CREATE TEMPORARY TABLE covid19_packages ( package text ) ;
+CREATE TEMPORARY TABLE covid19_packages ( id SERIAL PRIMARY KEY, package text ) ;
INSERT INTO covid19_packages VALUES
-('nextflow'),
-('capsule'),
-('snakemake'),
-('artic'),
-('bcbio'),
-('pigx-rnaseq'),
-('scrnaseq'),
-('shovill'),
-('smartseq2'),
-('viralcon'),
-('nf-core'),
-('abacas'),
-('allelecount'),
-('python3-anndata'),
-('libargs-dev'),
-('arvados'),
-('r-other-ascat'),
-('libatomicbitvector-dev'),
-('augustus'),
-('bandage'),
-('libbbhash-dev'),
-('bcftools'),
-('bedtools'),
-('python3-biopython'),
-('ncbi-blast+'), -- == blast
-('bowtie2'),
-('busco'),
-('bustools'),
-('bwa'),
-('cat-bat'),
-('centrifuge'),
-('changeo'),
-('cutadapt'),
-('diamond-aligner'),
-('python3-deeptools'),
-('drop-seq-tools'),
-('fastp'),
-('fastqc'),
-('filtlong'),
-('flappie'),
-('flash'),
-('flye'),
-('freebayes'),
-('gatk'),
-('tigr-glimmer'),
-('graphmap2'),
-('bio-guppy'),
-('python3-h5py'),
-('r-bioc-htsfilter'),
-('libhts-dev'),
-('python3-htseq'),
-('iitii'),
-('ivar'),
-('kallisto'),
-('kmc'),
-('kraken2'),
-('radiant'), -- == krona - Debian had to change the name
-('lighter'),
-('lumpy-sv'),
-('magicblast'),
-('manta'),
-('mash'),
-('megahit'),
-('metabat'),
-('metaspades'),
-('minia'),
-('minimap2'),
-('mmap_allocator'),
-('mmmulti'),
-('mosdepth'),
-('multiqc'),
-('muscle'),
-('nanolyse'),
-('nanoplot'),
-('python3-numpy'),
-('python3-pandas'),
-('parallel-fastq-dump'),
-('picard-tools'),
-('pilon'),
-('porechop'),
-('pplacer'),
-('presto'),
-('prinseq-lite'),
-('prodigal'),
-('pycoqc'),
-('qcat'),
-('qualimap'),
-('quast'),
-('r-cran-alakazam'),
-('r-cran-shazam'),
-('r-cran-tigger'),
+(DEFAULT,'nextflow'),
+(DEFAULT,'capsule'),
+(DEFAULT,'snakemake'),
+(DEFAULT,'artic'),
+(DEFAULT,'bcbio'),
+(DEFAULT,'pigx-rnaseq'),
+(DEFAULT,'scrnaseq'),
+(DEFAULT,'shovill'),
+(DEFAULT,'smartseq2'),
+(DEFAULT,'viralcon'),
+(DEFAULT,'nf-core'),
+(DEFAULT,'abacas'),
+(DEFAULT,'allelecount'),
+(DEFAULT,'python3-anndata'),
+(DEFAULT,'libargs-dev'),
+(DEFAULT,'arvados'),
+(DEFAULT,'r-other-ascat'),
+(DEFAULT,'libatomicbitvector-dev'),
+(DEFAULT,'augustus'),
+(DEFAULT,'bandage'),
+(DEFAULT,'libbbhash-dev'),
+(DEFAULT,'bcftools'),
+(DEFAULT,'bedtools'),
+(DEFAULT,'python3-biopython'),
+(DEFAULT,'ncbi-blast+'), -- == blast
+(DEFAULT,'bowtie2'),
+(DEFAULT,'busco'),
+(DEFAULT,'bustools'),
+(DEFAULT,'bwa'),
+(DEFAULT,'cat-bat'),
+(DEFAULT,'centrifuge'),
+(DEFAULT,'changeo'),
+(DEFAULT,'cutadapt'),
+(DEFAULT,'diamond-aligner'),
+(DEFAULT,'python3-deeptools'),
+(DEFAULT,'drop-seq-tools'),
+(DEFAULT,'fastp'),
+(DEFAULT,'fastqc'),
+(DEFAULT,'filtlong'),
+(DEFAULT,'flappie'),
+(DEFAULT,'flash'),
+(DEFAULT,'flye'),
+(DEFAULT,'freebayes'),
+(DEFAULT,'gatk'),
+(DEFAULT,'tigr-glimmer'),
+(DEFAULT,'graphmap2'),
+(DEFAULT,'bio-guppy'),
+(DEFAULT,'python3-h5py'),
+(DEFAULT,'r-bioc-htsfilter'),
+(DEFAULT,'libhts-dev'),
+(DEFAULT,'python3-htseq'),
+(DEFAULT,'iitii'),
+(DEFAULT,'ivar'),
+(DEFAULT,'kallisto'),
+(DEFAULT,'kmc'),
+(DEFAULT,'kraken2'),
+(DEFAULT,'radiant'), -- == krona - Debian had to change the name
+(DEFAULT,'lighter'),
+(DEFAULT,'lumpy-sv'),
+(DEFAULT,'magicblast'),
+(DEFAULT,'manta'),
+(DEFAULT,'mash'),
+(DEFAULT,'masurca'),
+(DEFAULT,'mcaller'),
+(DEFAULT,'mecat2'),
+(DEFAULT,'medaka'),
+(DEFAULT,'megahit'),
+(DEFAULT,'megalodon'),
+(DEFAULT,'metabat'),
+(DEFAULT,'metaspades'),
+(DEFAULT,'minia'),
+(DEFAULT,'minimap2'),
+(DEFAULT,'minitour'),
+(DEFAULT,'libmmap-allocator-dev'),
+(DEFAULT,'mmmulti'),
+(DEFAULT,'mosdepth'),
+(DEFAULT,'multiqc'),
+(DEFAULT,'muscle'),
+(DEFAULT,'nanolyse'),
+(DEFAULT,'nanoplot'),
+(DEFAULT,'python3-numpy'),
+(DEFAULT,'python3-pandas'),
+(DEFAULT,'parallel-fastq-dump'),
+(DEFAULT,'picard-tools'),
+(DEFAULT,'pilon'),
+(DEFAULT,'porechop'),
+(DEFAULT,'pplacer'),
+(DEFAULT,'presto'),
+(DEFAULT,'prinseq-lite'),
+(DEFAULT,'prodigal'),
+(DEFAULT,'pycoqc'),
+(DEFAULT,'qcat'),
+(DEFAULT,'qualimap'),
+(DEFAULT,'quast'),
+(DEFAULT,'r-cran-alakazam'),
+(DEFAULT,'r-cran-shazam'),
+(DEFAULT,'r-cran-tigger'),
/*
-('r-cran-ggplot2'),
-('r-cran-rmarkdown'),
-('r-cran-locfit'),
-('r-bioc-deseq2'),
-('r-bioc-tximport'),
-('r-cran-data.table'),
-('r-cran-rlang'),
-('r-cran-ggrepel'),
-('r-cran-dt'),
-('r-cran-pheatmap'),
-('r-cran-corrplot'),
-('r-cran-reshape2'),
-('r-cran-plotly'),
-('r-cran-scales'),
-('r-cran-crosstalk'),
-('r-cran-gprofiler'),
-('r-bioc-summarizedexperiment'),
-('r-bioc-rtracklayer'),
-('r-cran-rjson'),
+(DEFAULT,'r-cran-ggplot2'),
+(DEFAULT,'r-cran-rmarkdown'),
+(DEFAULT,'r-cran-locfit'),
+(DEFAULT,'r-bioc-deseq2'),
+(DEFAULT,'r-bioc-tximport'),
+(DEFAULT,'r-cran-data.table'),
+(DEFAULT,'r-cran-rlang'),
+(DEFAULT,'r-cran-ggrepel'),
+(DEFAULT,'r-cran-dt'),
+(DEFAULT,'r-cran-pheatmap'),
+(DEFAULT,'r-cran-corrplot'),
+(DEFAULT,'r-cran-reshape2'),
+(DEFAULT,'r-cran-plotly'),
+(DEFAULT,'r-cran-scales'),
+(DEFAULT,'r-cran-crosstalk'),
+(DEFAULT,'r-cran-gprofiler'),
+(DEFAULT,'r-bioc-summarizedexperiment'),
+(DEFAULT,'r-bioc-rtracklayer'),
+(DEFAULT,'r-cran-rjson'),
*/
-('salmon'),
-('samclip'),
-('samtools'),
-('sepp'),
-('seqtk'),
-('seqwish'),
-('skesa'),
-('snpeff'),
-('snpsift'),
-('spades'),
-('sra-toolkit'),
-('rna-star'),
-('strelka'),
-('tiddit'),
-('trim-galore'),
-('trimmomatic'),
-('umap-learn'),
-('unicycler'),
-('varscan'),
-('vcftools'),
-('velvet'),
-('ensembl-vep'),
-('vg'),
-('vsearch'),
-('vt'),
-('wham-align')
+(DEFAULT,'salmon'),
+(DEFAULT,'samclip'),
+(DEFAULT,'samtools'),
+(DEFAULT,'sepp'),
+(DEFAULT,'seqtk'),
+(DEFAULT,'seqwish'),
+(DEFAULT,'skesa'),
+(DEFAULT,'snpeff'),
+(DEFAULT,'snpsift'),
+(DEFAULT,'spades'),
+(DEFAULT,'sra-toolkit'),
+(DEFAULT,'rna-star'),
+(DEFAULT,'strelka'),
+(DEFAULT,'tiddit'),
+(DEFAULT,'trim-galore'),
+(DEFAULT,'trimmomatic'),
+(DEFAULT,'umap-learn'),
+(DEFAULT,'unicycler'),
+(DEFAULT,'varscan'),
+(DEFAULT,'vcftools'),
+(DEFAULT,'velvet'),
+(DEFAULT,'ensembl-vep'),
+(DEFAULT,'vg'),
+(DEFAULT,'vsearch'),
+(DEFAULT,'vt'),
+(DEFAULT,'wham-align')
;
SELECT co.package, architectures, s.section,
@@ -221,20 +227,20 @@ SELECT co.package, architectures, s.section,
SELECT package, string_agg(architecture, ',') AS architectures FROM (
SELECT DISTINCT package, architecture FROM packages WHERE release in ('sid') AND
architecture IN ('all', 'amd64', 'arm64', 'ppc64el' ) AND
- package IN (SELECT * FROM covid19_packages)
+ package IN (SELECT package FROM covid19_packages)
ORDER BY package, architecture
) tmp GROUP BY package
) p ON p.package = co.package
LEFT JOIN (
SELECT DISTINCT package, CASE WHEN substring(section from 0 for 10) = 'non-free/' THEN 'non-free' ELSE 'main' END AS section FROM packages WHERE release in ('sid') AND
- package IN (SELECT * FROM covid19_packages)
+ package IN (SELECT package FROM covid19_packages)
) s ON s.package = co.package
LEFT JOIN (
SELECT package, string_agg(release, ',') AS releases FROM (
SELECT DISTINCT p.package, p.release, s.sort FROM packages p
JOIN releases s ON p.release = s.release
WHERE p.release in ('sid', 'bullseye', 'buster') AND
- package IN (SELECT * FROM covid19_packages)
+ package IN (SELECT package FROM covid19_packages)
ORDER BY p.package, s.sort, p.release
) tmp GROUP BY package
) r ON r.package = co.package
@@ -257,7 +263,7 @@ SELECT co.package, architectures, s.section,
WHERE name = 'bio.tools') tmp) bt ON bt.package = co.package
LEFT OUTER JOIN (SELECT DISTINCT p.package, p.source, s.testsuite FROM packages p
LEFT JOIN (SELECT source, testsuite FROM sources WHERE release = 'sid') s ON p.source = s.source ) t ON co.package = t.package
- ORDER BY package
+ ORDER BY id
;
END;
EOT
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,68 +1,93 @@
-Last-Update: Fri, 05 Jun 2020 11:16:19 +0200
+Last-Update: Sat, 06 Jun 2020 07:14:46 +0200
package | architectures | section | releases | conda | bio.tools | testsuite
------------------------+---------------------+----------+-----------------------------------------------+----------------------+---------------+-------------------------------------
+ nextflow | | | https://salsa.debian.org/med-team/nextflow | | |
+ capsule | | | | | |
+ snakemake | all | main | buster,bullseye,sid | snakemake | snakemake | autopkgtest
+ artic | | | | | |
+ bcbio | all | main | buster,bullseye,sid | bcbio-nextgen | bcbio-nextgen | autopkgtest-pkg-python
+ pigx-rnaseq | | | https://salsa.debian.org/med-team/pigx-rnaseq | | |
+ scrnaseq | | | | | |
+ shovill | | | | | |
+ smartseq2 | | | | | |
+ viralcon | | | | | |
+ nf-core | | | | | |
abacas | all | main | buster,bullseye,sid | | |
allelecount | amd64,arm64,ppc64el | main | bullseye,sid | cancerit-allelecount | | autopkgtest-pkg-perl
- artic | | | | | |
+ python3-anndata | | | new | anndata | |
+ libargs-dev | | | new | | |
arvados | | | https://salsa.debian.org/med-team/arvados | | |
+ r-other-ascat | all | main | sid | ascat | | autopkgtest-pkg-r
+ libatomicbitvector-dev | | | new | | |
augustus | amd64,arm64,ppc64el | main | buster,bullseye,sid | augustus | AUGUSTUS | autopkgtest
bandage | amd64,arm64,ppc64el | main | buster,bullseye,sid | bandage | bandage |
- bcbio | all | main | buster,bullseye,sid | bcbio-nextgen | bcbio-nextgen | autopkgtest-pkg-python
+ libbbhash-dev | | | new | | |
bcftools | amd64,arm64,ppc64el | main | buster,bullseye,sid | bcftools | bcftools | autopkgtest
bedtools | amd64,arm64,ppc64el | main | buster,bullseye,sid | biotools | bedtools | autopkgtest
- bio-guppy | | | | | |
+ python3-biopython | amd64,arm64,ppc64el | main | buster,bullseye,sid | | Biopython | autopkgtest
+ ncbi-blast+ | amd64,arm64,ppc64el | main | buster,bullseye,sid | blast | blast | autopkgtest
bowtie2 | amd64,arm64,ppc64el | main | buster,bullseye,sid | bowtie2 | bowtie2 | autopkgtest
busco | all | main | bullseye,sid | busco | |
bustools | amd64,arm64,ppc64el | main | bullseye,sid | bustools | BUStools |
bwa | amd64,arm64,ppc64el | main | buster,bullseye,sid | bwa | BWA | autopkgtest
- capsule | | | | | |
cat-bat | amd64,arm64,ppc64el | main | bullseye,sid | cat | |
centrifuge | amd64 | main | buster,bullseye,sid | centrifuge | Centrifuge |
changeo | all | main | buster,bullseye,sid | changeo | | autopkgtest-pkg-python
cutadapt | all | main | buster,bullseye,sid | cutadapt | cutadapt | autopkgtest-pkg-python
- diamond-aligner | amd64,arm64,ppc64el | main | buster,bullseye,sid | diamond | Diamond | autopkgtest
diamond-aligner | amd64,arm64,ppc64el | main | buster,bullseye,sid | diamond | Diamond |
+ diamond-aligner | amd64,arm64,ppc64el | main | buster,bullseye,sid | diamond | Diamond | autopkgtest
+ python3-deeptools | all | main | bullseye,sid | deeptools | deeptools | autopkgtest, autopkgtest-pkg-python
drop-seq-tools | all | main | sid | dropseq_tools | |
- ensembl-vep | | | https://salsa.debian.org/med-team/ensembl-vep | ensembl-vep | |
fastp | amd64,arm64,ppc64el | main | buster,bullseye,sid | fastp | | autopkgtest
fastqc | all | main | buster,bullseye,sid | fastqc | FastQC | autopkgtest
filtlong | amd64,arm64,ppc64el | main | bullseye,sid | filtlong | | autopkgtest
+ flappie | | | | | |
flash | amd64,arm64,ppc64el | main | bullseye,sid | flash | |
+ flye | | | | | |
freebayes | amd64,arm64,ppc64el | main | buster,bullseye,sid | freebayes | freebayes | autopkgtest
gatk | | | https://salsa.debian.org/med-team/gatk | gatk4 | |
+ tigr-glimmer | amd64,arm64,ppc64el | main | buster,bullseye,sid | glimmer | glimmer | autopkgtest
graphmap2 | | | https://salsa.debian.org/med-team/graphmap2 | graphmap | |
+ bio-guppy | | | | | |
+ python3-h5py | all | main | buster,bullseye,sid | | | autopkgtest
+ r-bioc-htsfilter | all | main | bullseye,sid | | | autopkgtest, autopkgtest-pkg-r
+ libhts-dev | amd64,arm64,ppc64el | main | buster,bullseye,sid | htslib | | autopkgtest
+ python3-htseq | amd64,arm64,ppc64el | main | buster,bullseye,sid | htseq | htseq | autopkgtest
+ iitii | | | | | |
ivar | amd64,arm64 | main | bullseye,sid | ivar | |
kallisto | amd64,arm64,ppc64el | main | bullseye,sid | kallisto | kallisto | autopkgtest
kmc | amd64,arm64,ppc64el | main | buster,bullseye,sid | kmc | KMC | autopkgtest
kraken2 | amd64,arm64,ppc64el | main | bullseye,sid | kraken2 | kraken | autopkgtest
- libargs-dev | | | new | | |
- libatomicbitvector-dev | | | new | | |
- libbbhash-dev | | | new | | |
- libhts-dev | amd64,arm64,ppc64el | main | buster,bullseye,sid | htslib | | autopkgtest
+ radiant | all | main | buster,bullseye,sid | | krona |
lighter | | | new | lighter | |
lumpy-sv | | | new | lumpy-sv | |
magicblast | | | | | |
manta | | | https://salsa.debian.org/med-team/manta | manta | |
mash | amd64,arm64,ppc64el | main | buster,bullseye,sid | mash | | autopkgtest
+ masurca | | | | | |
+ mcaller | | | | | |
+ mecat2 | | | | | |
+ medaka | | | | | |
megahit | | | new | megahit | |
+ megalodon | | | | | |
metabat | | | new | metabat2 | |
metaspades | | | | | |
minia | amd64,arm64,ppc64el | main | buster,bullseye,sid | minia | minia | autopkgtest
minimap2 | amd64,arm64,ppc64el | main | buster,bullseye,sid | minimap2 | | autopkgtest
- mmap_allocator | | | | | |
+ minitour | | | | | |
+ libmmap-allocator-dev | | | | | |
mmmulti | | | | | |
mosdepth | | | https://salsa.debian.org/med-team/mosdepth | mosdepth | |
multiqc | all | main | bullseye,sid | multiqc | multiqc |
muscle | amd64,arm64,ppc64el | main | buster,bullseye,sid | muscle | MUSCLE | autopkgtest
nanolyse | | | https://salsa.debian.org/med-team/nanolyse | nanolyse | |
nanoplot | | | https://salsa.debian.org/med-team/nanoplot | nanoplot | |
- ncbi-blast+ | amd64,arm64,ppc64el | main | buster,bullseye,sid | blast | blast | autopkgtest
- nextflow | | | https://salsa.debian.org/med-team/nextflow | | |
- nf-core | | | | | |
+ python3-numpy | amd64,arm64,ppc64el | main | buster,bullseye,sid | | | autopkgtest
+ python3-numpy | amd64,arm64,ppc64el | main | buster,bullseye,sid | | | autopkgtest
+ python3-pandas | all | main | buster,bullseye,sid | | | autopkgtest
parallel-fastq-dump | all | main | sid | parallel-fastq-dump | |
picard-tools | amd64 | main | buster,bullseye,sid | picard | Picard_tools | autopkgtest
- pigx-rnaseq | | | https://salsa.debian.org/med-team/pigx-rnaseq | | |
pilon | all | main | buster,bullseye,sid | pilon | pilon |
porechop | amd64,arm64,ppc64el | main | buster,bullseye,sid | porechop | | autopkgtest
pplacer | | | https://salsa.debian.org/med-team/pplacer | pplacer | |
@@ -70,42 +95,26 @@ Last-Update: Fri, 05 Jun 2020 11:16:19 +0200
prinseq-lite | all | main | bullseye,sid | | | autopkgtest
prodigal | amd64,arm64,ppc64el | main | buster,bullseye,sid | prodigal | | autopkgtest
pycoqc | all | main | bullseye,sid | pycoqc | |
- python3-anndata | | | new | anndata | |
- python3-biopython | amd64,arm64,ppc64el | main | buster,bullseye,sid | | Biopython | autopkgtest
- python3-deeptools | all | main | bullseye,sid | deeptools | deeptools | autopkgtest, autopkgtest-pkg-python
- python3-h5py | all | main | buster,bullseye,sid | | | autopkgtest
- python3-htseq | amd64,arm64,ppc64el | main | buster,bullseye,sid | htseq | htseq | autopkgtest
- python3-numpy | amd64,arm64,ppc64el | main | buster,bullseye,sid | | | autopkgtest
- python3-numpy | amd64,arm64,ppc64el | main | buster,bullseye,sid | | | autopkgtest
- python3-pandas | all | main | buster,bullseye,sid | | | autopkgtest
qcat | all | main | bullseye,sid | qcat | | autopkgtest
qualimap | | | https://salsa.debian.org/med-team/qualimap | qualimap | |
quast | | | https://salsa.debian.org/med-team/quast | quast | |
- radiant | all | main | buster,bullseye,sid | | krona |
- r-bioc-htsfilter | all | main | bullseye,sid | | | autopkgtest, autopkgtest-pkg-r
r-cran-alakazam | amd64,arm64,ppc64el | main | buster,bullseye,sid | | | autopkgtest-pkg-r
r-cran-shazam | all | main | buster,bullseye,sid | r-shazam | | autopkgtest-pkg-r
r-cran-tigger | all | main | buster,bullseye,sid | r-tigger | | autopkgtest-pkg-r
- rna-star | amd64,arm64,ppc64el | main | buster,bullseye,sid | star | star | autopkgtest
- r-other-ascat | all | main | sid | ascat | | autopkgtest-pkg-r
salmon | amd64 | main | buster,bullseye,sid | salmon | salmon |
samclip | | | new | samclip | |
samtools | amd64,arm64,ppc64el | main | buster,bullseye,sid | samtools | samtools | autopkgtest
- scrnaseq | | | | | |
sepp | | | https://salsa.debian.org/med-team/sepp | sepp | |
seqtk | amd64,arm64,ppc64el | main | buster,bullseye,sid | seqtk | seqtk | autopkgtest
seqwish | | | https://salsa.debian.org/med-team/seqwish | seqwish | |
- shovill | | | | | |
skesa | amd64 | main | bullseye,sid | skesa | |
- smartseq2 | | | | | |
- snakemake | all | main | buster,bullseye,sid | snakemake | snakemake | autopkgtest
snpeff | | | https://salsa.debian.org/med-team/snpeff | snpeff | |
snpsift | | | https://salsa.debian.org/med-team/snpeff | snpeff | |
spades | amd64 | main | buster,bullseye,sid | spades | Spades | autopkgtest
sra-toolkit | amd64 | main | buster,bullseye,sid | sra-tools | sra-tools | autopkgtest
+ rna-star | amd64,arm64,ppc64el | main | buster,bullseye,sid | star | star | autopkgtest
strelka | | | https://salsa.debian.org/med-team/strelka | strelka | |
tiddit | | | new | tiddit | |
- tigr-glimmer | amd64,arm64,ppc64el | main | buster,bullseye,sid | glimmer | glimmer | autopkgtest
trim-galore | all | main | bullseye,sid | trim-galore | | autopkgtest
trimmomatic | all | main | buster,bullseye,sid | trimmomatic | Trimmomatic | autopkgtest
umap-learn | | | new | | |
@@ -113,10 +122,10 @@ Last-Update: Fri, 05 Jun 2020 11:16:19 +0200
varscan | amd64 | non-free | buster,bullseye,sid | varscan | varscan |
vcftools | amd64,arm64,ppc64el | main | buster,bullseye,sid | vcftools | vcftools | autopkgtest
velvet | amd64,arm64,ppc64el | main | buster,bullseye,sid | velvet | velvet | autopkgtest
+ ensembl-vep | | | https://salsa.debian.org/med-team/ensembl-vep | ensembl-vep | |
vg | amd64 | main | bullseye,sid | vg | | autopkgtest
- viralcon | | | | | |
vsearch | amd64,ppc64el | main | buster,bullseye,sid | vsearch | vsearch |
vt | | | | | |
wham-align | amd64 | main | bullseye,sid | wham | wham |
-(116 Zeilen)
+(125 Zeilen)
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/84b7dfeb2cc4b1c2b1f47dea1d04237031ca19b0
--
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