[Blends-commit] [Git][blends-team/debug][master] Small debugging example

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / debug


Commits:
cfcc1f93 by Andreas Tille at 2020-06-18T21:46:26+02:00
Small debugging example

- - - - -


1 changed file:

- tasks/covid-19


Changes:

=====================================
tasks/covid-19
=====================================
@@ -5,82 +5,13 @@ Description: This task exists only for tagging COVID-19 relevant cases
   COVID-19 Biohackathon (April 5-11, 2020)
  This task was created only for the purpose to list relevant packages.
 
-X-Mark:  <bio>
+Recommends: abacas
 
-Recommends: cwltool, snakemake
+Recommends: bwa
 
-Recommends: augur, auspice
+Recommends: covtobed
 
-Recommends: chime
+Recommends: lastz
 
-Recommends: chip-seq
+Recommends: acacia
 
-Recommends: fastqc
-
-Recommends: nextstrain-ncov
-Remark: needs auspice
-
-Recommends: r-bioc-rcpi
-
-Recommends: r-cran-mediana
-
-Recommends: r-bioc-tcgabiolinks
-Remark: Non-distributable due to locfit dependency
-
-Recommends: r-cran-spp
-
-X-Mark:  TODO: Check out
-X-Mark:     https://www.bioinformatics.babraham.ac.uk/projects/index.html
-X-Mark:  for further tools
-
-X-Mark:  </bio>
-
-X-Mark:  <imaging>
-
-Recommends: aeskulap
-
-Recommends: conquest-common
-
-Suggests: conquest-dbase, conquest-mysql, conquest-postgres, conquest-sqlite
-
-Recommends: dcmtk
-
-Recommends: ginkgocadx
-
-Recommends: imagej
-
-Recommends: libgdcm-tools
-
-Recommends: slicer
-Remark: slicer was removed from Debian (see #644352)
- Its re-introduction into Debian is prepared by the Debian Med team here
-  https://salsa.debian.org/med-team/slicer
-
-Recommends: orthanc
-
-Suggests: orthanc-webviewer, orthanc-dicomweb, orthanc-imagej, orthanc-postgresql, orthanc-mysql
-
-Recommends: orthanc-wsi
-
-X-Mark:  </imaging>
-
-X-Mark:  <tools>
-
-X-Mark:  https://opensourceventilator.ie/
-X-Mark:    -> https://gitlab.com/open-source-ventilator/OpenLung
-
-X-Mark:  https://www.mikrocontroller.net/topic/491565
-X-Mark:    -> https://github.com/jcl5m1/ventilator
-
-X-Mark:  https://sormasorg.helmholtz-hzi.de/Open_source.html
-X-Mark:    -> https://github.com/hzi-braunschweig/SORMAS-Project
-
-X-Mark:  </tools>
-
-X-Mark:  <preconditions>
-
-Recommends: streamlit
-Remark: Needs help from Debian Science team
- This is a machine learning framework which is required by chime.
-
-X-Mark:  </preconditions>



View it on GitLab: https://salsa.debian.org/blends-team/debug/-/commit/cfcc1f93dcdf76755edfe6498fe81f54954ea0c1

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