Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
3f6450f7 by Andreas Tille at 2020-06-19T09:09:14+02:00
Update UDD status
- - - - -
1 changed file:
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
+Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
package | architectures | section | releases | conda | bio.tools | testsuite
------------------------+---------------------+----------+-----------------------------------------------------+----------------------+---------------+-------------------------------------
@@ -9,7 +9,7 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
bcbio | all | main | buster,bullseye,sid | bcbio-nextgen | bcbio-nextgen | autopkgtest-pkg-python
pigx-rnaseq | | | https://salsa.debian.org/med-team/pigx-rnaseq | | |
scrnaseq | | | | | |
- shovill | | | | | |
+ shovill | amd64,arm64,ppc64el | main | sid | | |
smartseq2 | | | | | |
viralcon | | | | | |
rosa | | | | | |
@@ -46,13 +46,13 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
diamond-aligner | amd64,arm64,ppc64el | main | buster,bullseye,sid | diamond | Diamond | autopkgtest
python3-deeptools | all | main | bullseye,sid | deeptools | deeptools | autopkgtest, autopkgtest-pkg-python
degreport | | | | | |
- drop-seq-tools | all | main | bullseye,sid | dropseq_tools | |
+ drop-seq-tools | all | main | bullseye,sid | dropseq_tools | | autopkgtest
r-bioc-edger | amd64,arm64,ppc64el | main | bullseye,sid | bioconductor-edger | edger | autopkgtest, autopkgtest-pkg-r
fastp | amd64,arm64,ppc64el | main | buster,bullseye,sid | fastp | | autopkgtest
fastqc | all | main | buster,bullseye,sid | fastqc | FastQC | autopkgtest
filtlong | amd64,arm64,ppc64el | main | bullseye,sid | filtlong | | autopkgtest
flappie | | | https://salsa.debian.org/med-team/flappie | | |
- flash | amd64,arm64,ppc64el | main | bullseye,sid | flash | |
+ flash | amd64,arm64,ppc64el | main | bullseye,sid | flash | | autopkgtest
flye | | | https://salsa.debian.org/med-team/flye | flye | |
freebayes | amd64,arm64,ppc64el | main | buster,bullseye,sid | freebayes | freebayes | autopkgtest
gatk | | | https://salsa.debian.org/med-team/gatk | gatk4 | |
@@ -69,7 +69,7 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
python3-htseq | amd64,arm64,ppc64el | main | buster,bullseye,sid | htseq | htseq | autopkgtest
iitii | amd64 | main | sid | | | autopkgtest
python3-intake | | | | | |
- ivar | amd64,arm64 | main | bullseye,sid | ivar | |
+ ivar | amd64,arm64 | main | bullseye,sid | ivar | | autopkgtest
kallisto | amd64,arm64,ppc64el | main | bullseye,sid | kallisto | kallisto | autopkgtest
kmc | amd64,arm64,ppc64el | main | buster,bullseye,sid | kmc | KMC | autopkgtest
kraken2 | amd64,arm64,ppc64el | main | bullseye,sid | kraken2 | kraken | autopkgtest
@@ -104,7 +104,7 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
nanopolish | amd64,arm64 | main | buster,bullseye,sid | nanopolish | nanopolish | autopkgtest
nanook | all | main | buster,bullseye,sid | | NanoOK |
nanoraw | | | | | |
- nanosv | | | new | nanosv | |
+ nanosv | all | main | sid | nanosv | |
python3-ncls | | | new | | |
ngmlr | | | | | |
oncofuse | | | https://salsa.debian.org/med-team/oncofuse | | |
@@ -113,10 +113,10 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
parallel-fastq-dump | all | main | sid | parallel-fastq-dump | |
python3-pauvre | all | main | bullseye,sid | | | autopkgtest
picard-tools | amd64 | main | buster,bullseye,sid | picard | Picard_tools | autopkgtest
- picopore | | | new | picopore | |
+ picopore | all | main | sid | picopore | | autopkgtest-pkg-python
pinfish | | | | | |
plasmidid | | | https://salsa.debian.org/med-team/plasmidid | plasmidid | |
- pilon | all | main | buster,bullseye,sid | pilon | pilon |
+ pilon | all | main | buster,bullseye,sid | pilon | pilon | autopkgtest
pomoxis | | | | | |
pore | | | | | |
pore-c | | | | | |
@@ -124,7 +124,7 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
porejuicer | | | | | |
poretools | all | main | buster,bullseye,sid | poretools | | autopkgtest
pplacer | | | https://salsa.debian.org/med-team/pplacer | pplacer | |
- presto | all | main | sid | presto | pRESTO | autopkgtest-pkg-python
+ presto | all | main | bullseye,sid | presto | pRESTO | autopkgtest-pkg-python
prinseq-lite | all | main | bullseye,sid | | | autopkgtest
prodigal | amd64,arm64,ppc64el | main | buster,bullseye,sid | prodigal | | autopkgtest
pybedtools-bin | all | main | buster,bullseye,sid | pybedtools | pybedtools | autopkgtest-pkg-python
@@ -144,7 +144,7 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
sailfish | | | https://salsa.debian.org/med-team/sailfish | | |
salmon | amd64 | main | buster,bullseye,sid | salmon | salmon |
samblaster | amd64,arm64,ppc64el | main | buster,bullseye,sid | samblaster | SAMBLASTER |
- samclip | | | new | samclip | |
+ samclip | all | main | sid | samclip | | autopkgtest
samtools | amd64,arm64,ppc64el | main | buster,bullseye,sid | samtools | samtools | autopkgtest
scrappie | | | | | |
sepp | | | https://salsa.debian.org/med-team/sepp | sepp | |
@@ -164,7 +164,7 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
streamformatics | | | | | |
strelka | | | https://salsa.debian.org/med-team/strelka | strelka | |
streamz | | | | | |
- tiddit | | | new | tiddit | |
+ tiddit | amd64,arm64,ppc64el | main | sid | tiddit | |
tombo | | | https://salsa.debian.org/med-team/tombo | ont-tombo | |
tophat-recondition | all | main | bullseye,sid | | |
tornado | | | | | |
@@ -181,7 +181,7 @@ Last-Update: Thu, 18 Jun 2020 17:15:39 +0200
vienna-rna | | | https://salsa.debian.org/med-team/vienna-rna | | |
vsearch | amd64,ppc64el | main | buster,bullseye,sid | vsearch | vsearch |
vt | | | | | |
- wham-align | amd64 | main | bullseye,sid | wham | wham |
+ wham-align | amd64 | main | bullseye,sid | wham | wham | autopkgtest
yanagiba | | | | | |
yanosim | | | | | |
libatomicbitvector-dev | all | main | bullseye,sid | | | autopkgtest
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/3f6450f7f79a8940b76deace116b5eca7f29bc43
--
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/3f6450f7f79a8940b76deace116b5eca7f29bc43
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