Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
b949d091 by Andreas Tille at 2020-06-20T11:20:51+02:00
Update UDD status
- - - - -
1 changed file:
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
+Last-Update: Sat, 20 Jun 2020 11:13:46 +0200
package | architectures | section | releases | conda | bio.tools | testsuite
------------------------+---------------------+----------+-----------------------------------------------------+----------------------+---------------+-------------------------------------
@@ -21,7 +21,7 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
libargs-dev | | | new | | |
arvados | | | https://salsa.debian.org/med-team/arvados | | |
r-other-ascat | all | main | sid | ascat | | autopkgtest-pkg-r
- assembly-stats | amd64,arm64,ppc64el | main | bullseye,sid | | | autopkgtest
+ assembly-stats | amd64,arm64,ppc64el | main | bullseye,sid | assembly-stats | | autopkgtest
atropos | amd64,arm64,ppc64el | main | bullseye,sid | atropos | atropos |
augustus | amd64,arm64,ppc64el | main | buster,bullseye,sid | augustus | AUGUSTUS | autopkgtest
bamkit | all | main | sid | | |
@@ -52,7 +52,7 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
fastqc | all | main | buster,bullseye,sid | fastqc | FastQC | autopkgtest
filtlong | amd64,arm64,ppc64el | main | bullseye,sid | filtlong | | autopkgtest
flappie | | | https://salsa.debian.org/med-team/flappie | | |
- flash | amd64,arm64,ppc64el | main | bullseye,sid | flash | | autopkgtest
+ flash | amd64,arm64,ppc64el | main | bullseye,sid | flash | flash | autopkgtest
flye | | | https://salsa.debian.org/med-team/flye | flye | |
freebayes | amd64,arm64,ppc64el | main | buster,bullseye,sid | freebayes | freebayes | autopkgtest
gatk | | | https://salsa.debian.org/med-team/gatk | gatk4 | |
@@ -68,14 +68,14 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
libhts-dev | amd64,arm64,ppc64el | main | buster,bullseye,sid | htslib | | autopkgtest
python3-htseq | amd64,arm64,ppc64el | main | buster,bullseye,sid | htseq | htseq | autopkgtest
iitii | amd64 | main | sid | | | autopkgtest
- python3-intake | | | | | |
+ python3-intake | | | https://salsa.debian.org/med-team/intake | | |
ivar | amd64,arm64 | main | bullseye,sid | ivar | | autopkgtest
kallisto | amd64,arm64,ppc64el | main | bullseye,sid | kallisto | kallisto | autopkgtest
kmc | amd64,arm64,ppc64el | main | buster,bullseye,sid | kmc | KMC | autopkgtest
kraken2 | amd64,arm64,ppc64el | main | bullseye,sid | kraken2 | kraken | autopkgtest
radiant | all | main | buster,bullseye,sid | | krona |
lighter | | | new | lighter | |
- r-cran-lsd | | | https://salsa.debian.org/r-pkg-team/r-cran-lsd | | |
+ r-cran-lsd | | | new | r-lsd | |
lumpy-sv | | | new | lumpy-sv | |
ncbi-magicblast | | | https://salsa.debian.org/med-team/ncbi-magicblast | magicblast | |
manta | | | https://salsa.debian.org/med-team/manta | manta | |
@@ -97,7 +97,7 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
mosdepth | | | https://salsa.debian.org/med-team/mosdepth | mosdepth | |
multiqc | all | main | bullseye,sid | multiqc | multiqc |
muscle | amd64,arm64,ppc64el | main | buster,bullseye,sid | muscle | MUSCLE | autopkgtest
- nanofilt | | | | | |
+ nanofilt | | | new | nanofilt | |
nanolyse | | | https://salsa.debian.org/med-team/nanolyse | nanolyse | |
python3-nanomath | all | main | bullseye,sid | | | autopkgtest
nanoplot | | | https://salsa.debian.org/med-team/nanoplot | nanoplot | |
@@ -106,10 +106,10 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
nanoraw | | | | | |
nanosv | all | main | sid | nanosv | |
python3-ncls | | | new | | |
- ngmlr | | | | | |
+ ngmlr | | | new | ngmlr | |
oncofuse | | | https://salsa.debian.org/med-team/oncofuse | | |
optitype | | | https://salsa.debian.org/med-team/optitype | | |
- python3-pairtools | | | | | |
+ python3-pairtools | | | https://salsa.debian.org/med-team/pairtools | | |
parallel-fastq-dump | all | main | sid | parallel-fastq-dump | |
python3-pauvre | all | main | bullseye,sid | | | autopkgtest
picard-tools | amd64 | main | buster,bullseye,sid | picard | Picard_tools | autopkgtest
@@ -128,7 +128,7 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
prinseq-lite | all | main | bullseye,sid | | | autopkgtest
prodigal | amd64,arm64,ppc64el | main | buster,bullseye,sid | prodigal | | autopkgtest
pybedtools-bin | all | main | buster,bullseye,sid | pybedtools | pybedtools | autopkgtest-pkg-python
- python3-pychopper | | | | | |
+ python3-pychopper | | | new | | |
pycoqc | all | main | bullseye,sid | pycoqc | |
pyomo | | | | | |
python3-pysam | amd64,arm64,ppc64el | main | buster,bullseye,sid | pysam | pysam | autopkgtest, autopkgtest-pkg-python
@@ -144,9 +144,9 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
sailfish | | | https://salsa.debian.org/med-team/sailfish | | |
salmon | amd64 | main | buster,bullseye,sid | salmon | salmon |
samblaster | amd64,arm64,ppc64el | main | buster,bullseye,sid | samblaster | SAMBLASTER |
- samclip | all | main | sid | samclip | | autopkgtest
+ samclip | all | main | bullseye,sid | samclip | | autopkgtest
samtools | amd64,arm64,ppc64el | main | buster,bullseye,sid | samtools | samtools | autopkgtest
- scrappie | | | | | |
+ scrappie | | | https://salsa.debian.org/med-team/scrappie | scrappie | |
sepp | | | https://salsa.debian.org/med-team/sepp | sepp | |
python3-seqcluster | | | https://salsa.debian.org/med-team/python-seqcluster | | |
seqlib | | | | | |
@@ -163,7 +163,7 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
rna-star | amd64,arm64,ppc64el | main | buster,bullseye,sid | star | star | autopkgtest
streamformatics | | | | | |
strelka | | | https://salsa.debian.org/med-team/strelka | strelka | |
- streamz | | | | | |
+ streamz | | | new | | |
tiddit | amd64,arm64,ppc64el | main | sid | tiddit | |
tombo | | | https://salsa.debian.org/med-team/tombo | ont-tombo | |
tophat-recondition | all | main | bullseye,sid | | |
@@ -180,10 +180,10 @@ Last-Update: Fri, 19 Jun 2020 09:06:17 +0200
vg | amd64 | main | bullseye,sid | vg | | autopkgtest
vienna-rna | | | https://salsa.debian.org/med-team/vienna-rna | | |
vsearch | amd64,ppc64el | main | buster,bullseye,sid | vsearch | vsearch |
- vt | | | | | |
+ vt | | | new | vt | |
wham-align | amd64 | main | bullseye,sid | wham | wham | autopkgtest
- yanagiba | | | | | |
- yanosim | | | | | |
+ yanagiba | | | new | | |
+ yanosim | | | new | | |
libatomicbitvector-dev | all | main | bullseye,sid | | | autopkgtest
python3-h5py | all | main | buster,bullseye,sid | | | autopkgtest
python3-numpy | amd64,arm64,ppc64el | main | buster,bullseye,sid | | | autopkgtest
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/b949d091360a8ae1c25e6bbde597345aa85aa738
--
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/b949d091360a8ae1c25e6bbde597345aa85aa738
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