[Blends-commit] [Git][blends-team/med][master] More packages in new and salsa
Andreas Tille
gitlab at salsa.debian.org
Fri May 22 21:02:41 BST 2020
Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
d4f94c3d by Andreas Tille at 2020-05-22T22:02:25+02:00
More packages in new and salsa
- - - - -
1 changed file:
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,14 +1,14 @@
-Last-Update: Thu, 21 May 2020 06:46:08 +0200
+Last-Update: Fri, 22 May 2020 21:54:19 +0200
package | architectures | section | releases | conda | bio.tools
-----------------------------+---------------------+----------+---------------------------------------------+--------------------------+--------------
abacas | all | main | buster,bullseye,sid | |
- allelecount | amd64,arm64,ppc64el | main | sid | cancerit-allelecount |
+ allelecount | amd64,arm64,ppc64el | main | bullseye,sid | cancerit-allelecount |
bcftools | amd64,arm64,ppc64el | main | buster,bullseye,sid | bcftools | bcftools
bedtools | amd64,arm64,ppc64el | main | buster,bullseye,sid | biotools | bedtools
bio-guppy | | | | |
bowtie2 | amd64,arm64,ppc64el | main | buster,bullseye,sid | bowtie2 | bowtie2
- busco | all | main | sid | |
+ busco | all | main | bullseye,sid | |
bustools | amd64,arm64,ppc64el | main | bullseye,sid | bustools | BUStools
bwa | amd64,arm64,ppc64el | main | buster,bullseye,sid | bwa | BWA
cat-bat | | | new | |
@@ -16,10 +16,10 @@ Last-Update: Thu, 21 May 2020 06:46:08 +0200
changeo | all | main | buster,bullseye,sid | changeo |
cutadapt | all | main | buster,bullseye,sid | cutadapt | cutadapt
diamond-aligner | amd64,arm64,ppc64el | main | buster,bullseye,sid | diamond | Diamond
- drop-seq-tools | | | | |
+ drop-seq-tools | | | new | |
fastp | amd64,arm64,ppc64el | main | buster,bullseye,sid | fastp |
fastqc | all | main | buster,bullseye,sid | fastqc | FastQC
- filtlong | amd64,arm64,ppc64el | main | bullseye,sid | |
+ filtlong | amd64,arm64,ppc64el | main | bullseye,sid | filtlong |
freebayes | amd64,arm64,ppc64el | main | buster,bullseye,sid | freebayes | freebayes
gatk | | | https://salsa.debian.org/med-team/gatk | |
graphmap2 | | | https://salsa.debian.org/med-team/graphmap2 | |
@@ -35,12 +35,12 @@ Last-Update: Thu, 21 May 2020 06:46:08 +0200
minimap2 | amd64,arm64,ppc64el | main | buster,bullseye,sid | minimap2 |
multiqc | all | main | bullseye,sid | multiqc | multiqc
muscle | amd64,arm64,ppc64el | main | buster,bullseye,sid | muscle | MUSCLE
- nanolyse | | | | |
+ nanolyse | | | https://salsa.debian.org/med-team/nanolyse | |
nanoplot | | | https://salsa.debian.org/med-team/nanoplot | |
ncbi-blast+ | amd64,arm64,ppc64el | main | buster,bullseye,sid | blast | blast
nextflow | | | https://salsa.debian.org/med-team/nextflow | |
nf-core | | | | |
- parallel-fastq-dump | all | main | sid | |
+ parallel-fastq-dump | all | main | sid | parallel-fastq-dump |
picard-tools | amd64 | main | buster,bullseye,sid | picard | Picard_tools
porechop | amd64,arm64,ppc64el | main | buster,bullseye,sid | |
presto | | | | |
@@ -86,7 +86,7 @@ Last-Update: Thu, 21 May 2020 06:46:08 +0200
snpsift | | | https://salsa.debian.org/med-team/snpeff | |
spades | amd64 | main | buster,bullseye,sid | spades | Spades
sra-toolkit | amd64 | main | buster,bullseye,sid | sra-tools | sra-tools
- strelka | | | | |
+ strelka | | | https://salsa.debian.org/med-team/strelka | |
tiddit | | | | |
trim-galore | all | main | bullseye,sid | trim-galore |
unicycler | amd64 | main | buster,bullseye,sid | unicycler | unicycler
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d4f94c3dea691ff64d5c8a6e51507bab4253153c
--
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d4f94c3dea691ff64d5c8a6e51507bab4253153c
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