[Blends-commit] [Git][blends-team/med][master] Some package migrations, more conda ids
Andreas Tille
gitlab at salsa.debian.org
Wed May 27 07:10:03 BST 2020
Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
b917aade by Andreas Tille at 2020-05-27T08:09:43+02:00
Some package migrations, more conda ids
- - - - -
1 changed file:
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,16 +1,16 @@
-Last-Update: Tue, 26 May 2020 15:02:54 +0200
+Last-Update: Wed, 27 May 2020 08:06:52 +0200
package | architectures | section | releases | conda | bio.tools
---------------------+---------------------+----------+---------------------------------------------+----------------------+--------------
abacas | all | main | buster,bullseye,sid | |
- allelecount | amd64,arm64,ppc64el | main | sid | cancerit-allelecount |
+ allelecount | amd64,arm64,ppc64el | main | bullseye,sid | cancerit-allelecount |
augustus | amd64,arm64,ppc64el | main | buster,bullseye,sid | augustus | AUGUSTUS
bandage | amd64,arm64,ppc64el | main | buster,bullseye,sid | bandage | bandage
bcftools | amd64,arm64,ppc64el | main | buster,bullseye,sid | bcftools | bcftools
bedtools | amd64,arm64,ppc64el | main | buster,bullseye,sid | biotools | bedtools
bio-guppy | | | | |
bowtie2 | amd64,arm64,ppc64el | main | buster,bullseye,sid | bowtie2 | bowtie2
- busco | all | main | sid | busco |
+ busco | all | main | bullseye,sid | busco |
bustools | amd64,arm64,ppc64el | main | bullseye,sid | bustools | BUStools
bwa | amd64,arm64,ppc64el | main | buster,bullseye,sid | bwa | BWA
cat-bat | | | new | cat |
@@ -18,14 +18,14 @@ Last-Update: Tue, 26 May 2020 15:02:54 +0200
changeo | all | main | buster,bullseye,sid | changeo |
cutadapt | all | main | buster,bullseye,sid | cutadapt | cutadapt
diamond-aligner | amd64,arm64,ppc64el | main | buster,bullseye,sid | diamond | Diamond
- drop-seq-tools | | | new | dropseq_tools |
+ drop-seq-tools | all | main | sid | dropseq_tools |
fastp | amd64,arm64,ppc64el | main | buster,bullseye,sid | fastp |
fastqc | all | main | buster,bullseye,sid | fastqc | FastQC
filtlong | amd64,arm64,ppc64el | main | bullseye,sid | filtlong |
flash | | | | |
freebayes | amd64,arm64,ppc64el | main | buster,bullseye,sid | freebayes | freebayes
- gatk | | | https://salsa.debian.org/med-team/gatk | |
- graphmap2 | | | https://salsa.debian.org/med-team/graphmap2 | |
+ gatk | | | https://salsa.debian.org/med-team/gatk | gatk4 |
+ graphmap2 | | | https://salsa.debian.org/med-team/graphmap2 | graphmap |
ivar | | | new | ivar |
kallisto | amd64,arm64,ppc64el | main | bullseye,sid | kallisto | kallisto
kmc | amd64,arm64,ppc64el | main | buster,bullseye,sid | kmc | KMC
@@ -36,37 +36,37 @@ Last-Update: Tue, 26 May 2020 15:02:54 +0200
magicblast | | | | |
manta | | | https://salsa.debian.org/med-team/manta | manta |
mash | amd64,arm64,ppc64el | main | buster,bullseye,sid | mash |
- megahit | | | new | |
+ megahit | | | new | megahit |
metabat | | | | |
metaspades | | | | |
- minia | amd64,arm64,ppc64el | main | buster,bullseye,sid | | minia
+ minia | amd64,arm64,ppc64el | main | buster,bullseye,sid | minia | minia
minimap2 | amd64,arm64,ppc64el | main | buster,bullseye,sid | minimap2 |
multiqc | all | main | bullseye,sid | multiqc | multiqc
muscle | amd64,arm64,ppc64el | main | buster,bullseye,sid | muscle | MUSCLE
- nanolyse | | | https://salsa.debian.org/med-team/nanolyse | |
- nanoplot | | | https://salsa.debian.org/med-team/nanoplot | |
+ nanolyse | | | https://salsa.debian.org/med-team/nanolyse | nanolyse |
+ nanoplot | | | https://salsa.debian.org/med-team/nanoplot | nanoplot |
ncbi-blast+ | amd64,arm64,ppc64el | main | buster,bullseye,sid | blast | blast
nextflow | | | https://salsa.debian.org/med-team/nextflow | |
nf-core | | | | |
parallel-fastq-dump | all | main | sid | parallel-fastq-dump |
picard-tools | amd64 | main | buster,bullseye,sid | picard | Picard_tools
pilon | all | main | buster,bullseye,sid | pilon | pilon
- porechop | amd64,arm64,ppc64el | main | buster,bullseye,sid | |
+ porechop | amd64,arm64,ppc64el | main | buster,bullseye,sid | porechop |
pplacer | | | https://salsa.debian.org/med-team/pplacer | pplacer |
presto | | | | |
prinseq-lite | all | main | bullseye,sid | |
- prodigal | amd64,arm64,ppc64el | main | buster,bullseye,sid | |
- pycoqc | all | main | bullseye,sid | |
- python3-anndata | | | https://salsa.debian.org/med-team/anndata | |
+ prodigal | amd64,arm64,ppc64el | main | buster,bullseye,sid | prodigal |
+ pycoqc | all | main | bullseye,sid | pycoqc |
+ python3-anndata | | | new | anndata |
python3-biopython | amd64,arm64,ppc64el | main | buster,bullseye,sid | | Biopython
python3-deeptools | all | main | bullseye,sid | deeptools | deeptools
python3-h5py | all | main | buster,bullseye,sid | |
- python3-htseq | amd64,arm64,ppc64el | main | buster,bullseye,sid | | htseq
+ python3-htseq | amd64,arm64,ppc64el | main | buster,bullseye,sid | htseq | htseq
python3-numpy | amd64,arm64,ppc64el | main | buster,bullseye,sid | |
python3-pandas | all | main | buster,bullseye,sid | |
- qcat | all | main | bullseye,sid | |
- qualimap | | | https://salsa.debian.org/med-team/qualimap | |
- quast | | | https://salsa.debian.org/med-team/quast | |
+ qcat | all | main | bullseye,sid | qcat |
+ qualimap | | | https://salsa.debian.org/med-team/qualimap | qualimap |
+ quast | | | https://salsa.debian.org/med-team/quast | quast |
radiant | all | main | buster,bullseye,sid | | krona
r-cran-alakazam | amd64,arm64,ppc64el | main | buster,bullseye,sid | |
r-cran-ggplot2 | all | main | buster,bullseye,sid | |
@@ -78,9 +78,9 @@ Last-Update: Tue, 26 May 2020 15:02:54 +0200
salmon | amd64 | main | buster,bullseye,sid | salmon | salmon
samclip | | | | |
samtools | amd64,arm64,ppc64el | main | buster,bullseye,sid | samtools | samtools
- sepp | | | | |
+ sepp | | | https://salsa.debian.org/med-team/sepp | sepp |
seqtk | amd64,arm64,ppc64el | main | buster,bullseye,sid | seqtk | seqtk
- seqwish | | | | |
+ seqwish | | | https://salsa.debian.org/med-team/seqwish | seqwish |
skesa | amd64 | main | bullseye,sid | skesa |
snakemake | all | main | buster,bullseye,sid | snakemake | snakemake
snpeff | | | https://salsa.debian.org/med-team/snpeff | snpeff |
@@ -88,7 +88,7 @@ Last-Update: Tue, 26 May 2020 15:02:54 +0200
spades | amd64 | main | buster,bullseye,sid | spades | Spades
sra-toolkit | amd64 | main | buster,bullseye,sid | sra-tools | sra-tools
strelka | | | https://salsa.debian.org/med-team/strelka | strelka |
- tiddit | | | | |
+ tiddit | | | https://salsa.debian.org/med-team/tiddit | tiddit |
tigr-glimmer | amd64,arm64,ppc64el | main | buster,bullseye,sid | glimmer | glimmer
trim-galore | all | main | bullseye,sid | trim-galore |
trimmomatic | all | main | buster,bullseye,sid | trimmomatic | Trimmomatic
@@ -98,7 +98,7 @@ Last-Update: Tue, 26 May 2020 15:02:54 +0200
vcftools | amd64,arm64,ppc64el | main | buster,bullseye,sid | vcftools | vcftools
velvet | amd64,arm64,ppc64el | main | buster,bullseye,sid | velvet | velvet
vep | | | | |
- vg | amd64 | main | bullseye,sid | |
+ vg | amd64 | main | bullseye,sid | vg |
vsearch | amd64,ppc64el | main | buster,bullseye,sid | vsearch | vsearch
(98 Zeilen)
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/b917aade8725d6183985abac75099f71c2580b1a
--
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/b917aade8725d6183985abac75099f71c2580b1a
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