[med-svn] r2784 - trunk/packages/dialign-t/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-12-15 05:28:57 +0000 (Mon, 15 Dec 2008)
New Revision: 2784

Modified:
   trunk/packages/dialign-t/trunk/debian/changelog
   trunk/packages/dialign-t/trunk/debian/compat
   trunk/packages/dialign-t/trunk/debian/control
   trunk/packages/dialign-t/trunk/debian/copyright
   trunk/packages/dialign-t/trunk/debian/dialign-tx.1
   trunk/packages/dialign-t/trunk/debian/dialign-tx.1.xml
Log:
New upstream release.

  * New upstream release: 
    - Fixes memory handling with anchor points.
    - New option: -A optional anchor file [DEFAULT none]
  * debian/dialign-tx.1*: documented the -A option.
  * debian/co{mpat,trol}: using Debhelper 7.


Modified: trunk/packages/dialign-t/trunk/debian/changelog
===================================================================
--- trunk/packages/dialign-t/trunk/debian/changelog	2008-12-15 00:03:10 UTC (rev 2783)
+++ trunk/packages/dialign-t/trunk/debian/changelog	2008-12-15 05:28:57 UTC (rev 2784)
@@ -1,3 +1,13 @@
+dialign-t (1.0.2-1) unstable; urgency=low
+
+  * New upstream release:
+    - Fixes memory handling with anchor points.
+    - New option: -A optional anchor file [DEFAULT none]
+  * debian/dialign-tx.1*: documented the -A option.
+  * debian/co{mpat,trol}: using Debhelper 7.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 15 Dec 2008 14:12:59 +0900
+
 dialign-t (1.0.1-2) unstable; urgency=low
 
   * debian/control:

Modified: trunk/packages/dialign-t/trunk/debian/compat
===================================================================
--- trunk/packages/dialign-t/trunk/debian/compat	2008-12-15 00:03:10 UTC (rev 2783)
+++ trunk/packages/dialign-t/trunk/debian/compat	2008-12-15 05:28:57 UTC (rev 2784)
@@ -1 +1 @@
-5
+7

Modified: trunk/packages/dialign-t/trunk/debian/control
===================================================================
--- trunk/packages/dialign-t/trunk/debian/control	2008-12-15 00:03:10 UTC (rev 2783)
+++ trunk/packages/dialign-t/trunk/debian/control	2008-12-15 05:28:57 UTC (rev 2784)
@@ -4,7 +4,7 @@
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 5), cdbs
+Build-Depends: debhelper (>= 7), cdbs
 Standards-Version: 3.8.0
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/dialign-t/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dialign-t/trunk/

Modified: trunk/packages/dialign-t/trunk/debian/copyright
===================================================================
--- trunk/packages/dialign-t/trunk/debian/copyright	2008-12-15 00:03:10 UTC (rev 2783)
+++ trunk/packages/dialign-t/trunk/debian/copyright	2008-12-15 05:28:57 UTC (rev 2784)
@@ -1,8 +1,8 @@
 Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=129
 Upstream-Author: Amarendran R. Subramanian <subraman at informatik.uni-tuebingen.de>
-Packaged-By: Charles Plessy <plessy at debian.org>
-Packaged-Date: Tue,  9 Oct 2007 23:17:04 +0900
-Original-Source-Location: http://dialign-tx.gobics.de/DIALIGN-TX_1.0.1.tar.gz
+X-Packaged-By: Charles Plessy <plessy at debian.org>
+X-Packaged-Date: Tue,  9 Oct 2007 23:17:04 +0900
+Original-Source-Location: http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz
 
 Files: *
 Copyright: © 2004-2008 Amarendran R. Subramanian

Modified: trunk/packages/dialign-t/trunk/debian/dialign-tx.1
===================================================================
--- trunk/packages/dialign-t/trunk/debian/dialign-tx.1	2008-12-15 00:03:10 UTC (rev 2783)
+++ trunk/packages/dialign-t/trunk/debian/dialign-tx.1	2008-12-15 05:28:57 UTC (rev 2784)
@@ -1,11 +1,11 @@
 .\"     Title: DIALIGN-TX
 .\"    Author: Amarendran R. Subramanian <subraman at informatik.uni-tuebingen.de>
 .\" Generator: DocBook XSL Stylesheets v1.73.2 <http://docbook.sf.net/>
-.\"      Date: 06/03/2008
+.\"      Date: 12/15/2008
 .\"    Manual: DIALIGN-TX: Parameters
-.\"    Source: dialign-tx 1.0.1
+.\"    Source: dialign-tx 1.0.2
 .\"
-.TH "DIALIGN\-TX" "1" "06/03/2008" "dialign-tx 1.0.1" "DIALIGN-TX: Parameters"
+.TH "DIALIGN\-TX" "1" "12/15/2008" "dialign-tx 1.0.2" "DIALIGN-TX: Parameters"
 .\" disable hyphenation
 .nh
 .\" disable justification (adjust text to left margin only)
@@ -129,6 +129,11 @@
             
 .RE
 .PP
+\fB\-A\fR
+.RS 4
+Optional anchor file\&. [DEFAULT none]
+.RE
+.PP
 \fB\-D\fR
 .RS 4
 Input is DNA\-sequence\&.

Modified: trunk/packages/dialign-t/trunk/debian/dialign-tx.1.xml
===================================================================
--- trunk/packages/dialign-t/trunk/debian/dialign-tx.1.xml	2008-12-15 00:03:10 UTC (rev 2783)
+++ trunk/packages/dialign-t/trunk/debian/dialign-tx.1.xml	2008-12-15 05:28:57 UTC (rev 2784)
@@ -18,7 +18,7 @@
   <!ENTITY dhsurname   "Plessy">
   <!ENTITY dhemail     "plessy at debian.org">
   <!ENTITY dhusername  "&dhfirstname; &dhsurname;">
-  <!ENTITY dhrelease   "1.0.1">
+  <!ENTITY dhrelease   "1.0.2">
   <!ENTITY dhtitle     "DIALIGN-TX: Parameters">
   <!ENTITY dhucpackage "DIALIGN-TX">
   <!ENTITY dhpackage   "dialign-tx">
@@ -302,6 +302,13 @@
       </varlistentry>
         
       <varlistentry>
+        <term><option>-A</option></term>
+        <listitem>
+          <para>Optional anchor file. [DEFAULT none]</para>
+        </listitem>
+      </varlistentry>
+        
+      <varlistentry>
         <term><option>-D</option></term>
         <listitem>
           <para>Input is DNA-sequence.</para>