[med-svn] r2785 - trunk/packages/bioperl/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-12-15 11:46:53 +0000 (Mon, 15 Dec 2008)
New Revision: 2785

Added:
   trunk/packages/bioperl/trunk/debian/reference
Modified:
   trunk/packages/bioperl/trunk/debian/README.Debian
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/control
   trunk/packages/bioperl/trunk/debian/rules
Log:
Unclean commit that starts to prepare the 1.6.0 release.

Modified: trunk/packages/bioperl/trunk/debian/README.Debian
===================================================================
--- trunk/packages/bioperl/trunk/debian/README.Debian	2008-12-15 05:28:57 UTC (rev 2784)
+++ trunk/packages/bioperl/trunk/debian/README.Debian	2008-12-15 11:46:53 UTC (rev 2785)
@@ -12,23 +12,4 @@
   option ~Rsuggests:^package$ of the `aptitude' package manager, or the command
   `apt-get -o APT::Install-Suggests=true install'.
 
-* Please cite:
-
- at article{bioperl:2002,
-  author={J.E. Stajich and D. Block and K. Boulez and S.E. Brenner
-	and S.A. Chervitz and C. Dagdigian and G. Fuellen and J.G. Gilbert
-	and I. Korf and H. Lapp and H. Lehvaslaiho and C. Matsalla and
-	C.J. Mungall and B.I. Osborne and M.R. Pocock and P. Schattner and
-	M. Senger and L.D. Stein and E. Stupka and M.D. Wilkinson and E. Birney},
-  title="The Bioperl toolkit: Perl modules for the life sciences.",
-  journal="Genome Res.",
-  year=2002,
-  volume=12,
-  number=10,
-  pages="1611-1618",
-  doi={10.1101/gr.361602},
-  pmid="12368254"
-}
-when publishing work to which this package has contribute.
-
  -- Fri, 21 Sep 2007 22:52:22 +0900

Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2008-12-15 05:28:57 UTC (rev 2784)
+++ trunk/packages/bioperl/trunk/debian/changelog	2008-12-15 11:46:53 UTC (rev 2785)
@@ -1,13 +1,15 @@
-bioperl (1.5.2.102.20080828-1) UNRELEASED; urgency=low
+bioperl (1.5.2.102.20081109-1) UNRELEASED; urgency=low
 
   TODO: run installation interactively and figure out new dependancies.
 
   * Nightly build version.
   * debian/control
-    - Added libdata-stag-perl to Build-Depends-Indep.
+    - Added libdata-stag-perl, libmath-random-perl, libace-perl, libsvg-graph-perl, libbio-asn1-entrezgene-perl to Build-Depends-Indep.
+    - Added bioperl-run to the recommended packages.
     - Updated my email address.
   * debian/rules build: building Makefile.PL as bioperl does not use it by
     default anymore.
+  * debian/README.Debian: reference transferred to debian/reference.
 
  -- Charles Plessy <plessy at debian.org>  Thu, 28 Aug 2008 22:53:41 +0900
 

Modified: trunk/packages/bioperl/trunk/debian/control
===================================================================
--- trunk/packages/bioperl/trunk/debian/control	2008-12-15 05:28:57 UTC (rev 2784)
+++ trunk/packages/bioperl/trunk/debian/control	2008-12-15 11:46:53 UTC (rev 2785)
@@ -7,7 +7,9 @@
  Steffen Moeller <moeller at debian.org>, David Paleino <d.paleino at gmail.com>
 Build-Depends: debhelper (>= 5), quilt
 Build-Depends-Indep: perl (>= 5.6.1), libmodule-build-perl (>= 0.2808-0.2),
- libtest-harness-perl (>= 2.62), libio-string-perl, libdata-stag-perl
+ libtest-harness-perl (>= 2.62), libio-string-perl, libdata-stag-perl, libmath-random-perl,
+ libace-perl, libsvg-graph-perl, libbio-asn1-entrezgene-perl, libgraphviz-perl
+# Text::Parsewords is provided by Perl 5.10.
 Standards-Version: 3.7.3
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioperl/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioperl/trunk/
@@ -16,7 +18,7 @@
 Package: bioperl
 Architecture: all
 Depends: libio-string-perl, ${perl:Depends}
-Recommends: libwww-perl, liburi-perl, libxml-writer-perl
+Recommends: bioperl-run, libwww-perl, liburi-perl, libxml-writer-perl
 Suggests: libace-perl, libbio-asn1-entrezgene-perl, libclass-autoclass-perl,
  libclone-perl, libconvert-binary-c-perl, libdata-stag-xmlwriter-perl,
  libgd-gd2-perl, libgraph-perl, libhtml-parser-perl,

Added: trunk/packages/bioperl/trunk/debian/reference
===================================================================
--- trunk/packages/bioperl/trunk/debian/reference	                        (rev 0)
+++ trunk/packages/bioperl/trunk/debian/reference	2008-12-15 11:46:53 UTC (rev 2785)
@@ -0,0 +1,15 @@
+ at article{bioperl:2002,
+  author={J.E. Stajich and D. Block and K. Boulez and S.E. Brenner
+	and S.A. Chervitz and C. Dagdigian and G. Fuellen and J.G. Gilbert
+	and I. Korf and H. Lapp and H. Lehvaslaiho and C. Matsalla and
+	C.J. Mungall and B.I. Osborne and M.R. Pocock and P. Schattner and
+	M. Senger and L.D. Stein and E. Stupka and M.D. Wilkinson and E. Birney},
+  title="The Bioperl toolkit: Perl modules for the life sciences.",
+  journal="Genome Res.",
+  year=2002,
+  volume=12,
+  number=10,
+  pages="1611-1618",
+  doi={10.1101/gr.361602},
+  pmid="12368254"
+}

Modified: trunk/packages/bioperl/trunk/debian/rules
===================================================================
--- trunk/packages/bioperl/trunk/debian/rules	2008-12-15 05:28:57 UTC (rev 2784)
+++ trunk/packages/bioperl/trunk/debian/rules	2008-12-15 11:46:53 UTC (rev 2785)
@@ -52,8 +52,7 @@
 	touch $@
 
 test: build
-#	Disabled for the moment as it tries to access internet.
-#	./Build test
+	./Build test
 
 binary-indep: build install
 	dh_testdir