[med-svn] r1472 - in trunk/packages/boxshade/tags: . 3.3.1-3
tille at alioth.debian.org
tille at alioth.debian.org
Tue Feb 26 17:48:04 UTC 2008
Author: tille
Date: 2008-02-26 17:48:03 +0000 (Tue, 26 Feb 2008)
New Revision: 1472
Added:
trunk/packages/boxshade/tags/3.3.1-3/
trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh
trunk/packages/boxshade/tags/3.3.1-3/changelog
trunk/packages/boxshade/tags/3.3.1-3/control
trunk/packages/boxshade/tags/3.3.1-3/get-orig-source
trunk/packages/boxshade/tags/3.3.1-3/rules
Removed:
trunk/packages/boxshade/tags/3.3.1-3/changelog
trunk/packages/boxshade/tags/3.3.1-3/control
trunk/packages/boxshade/tags/3.3.1-3/rules
Log:
Tagged 3.3.1-3 release
Copied: trunk/packages/boxshade/tags/3.3.1-3 (from rev 1470, trunk/packages/boxshade/trunk/debian)
Copied: trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh (from rev 1471, trunk/packages/boxshade/trunk/debian/boxshade.sh)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh 2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,3 @@
+#!/bin/bash
+export BOXDIR=/etc/boxshade
+/usr/lib/boxshade/boxshade $*
Deleted: trunk/packages/boxshade/tags/3.3.1-3/changelog
===================================================================
--- trunk/packages/boxshade/trunk/debian/changelog 2008-02-26 08:06:06 UTC (rev 1470)
+++ trunk/packages/boxshade/tags/3.3.1-3/changelog 2008-02-26 17:48:03 UTC (rev 1472)
@@ -1,71 +0,0 @@
-boxshade (3.3.1-3) UNRELEASED; urgency=low
-
- [ David Paleino ]
- * debian/boxshade.1 has been statically generated: this saves some
- time (and space) on buildds (leaving the XML version for future
- editing)
- * debian/control:
- - B-D updated (manpage is not generated on buildds anymore)
- - added myself to Uploaders
- - XS-Vcs-* moved to Vcs-* and fixed
- - Homepage field now replaces the old pseudo-field in the long
- description
- - removed XS- from DM-Upload-Allowed
- * debian/rules:
- - reflecting static generation of boxshade.1 -- removing boxshade.1
- target
- - some general cleanup
- * debian/README.Debian updated: the new debian-med.alioth.d.o website
- is now mentioned.
-
- [ Nelson A. de Oliveira ]
- * Added watch file.
-
- -- David Paleino <d.paleino at gmail.com> Wed, 06 Feb 2008 12:02:26 +0100
-
-boxshade (3.3.1-2) unstable; urgency=low
-
- [Charles Plessy]
-
- * Debian Menu transition: Apps/Science becomes Applications/Science/Biology.
- * makefile.unx : changes managed using the `quilt' patch system.
- * makefile.unx : commenting `LDFLAGS= -s' so that stripping is handled by
- dh_strip (Closes: #436605).
- * debian/rules : `ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))' test
- removed because dh_strip can work without.
-
- [Steffen Moeller]
-
- * Updated README.Debian with reference to Debian-Med
- * Updated email address to moeller at debian.org
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Thu, 9 Aug 2007 10:38:31 +0900
-
-boxshade (3.3.1-1) unstable; urgency=low
-
- [ Steffen Moeller ]
- * Removed [biology] tag from description
-
- [ Charles Plessy ]
- * New version number, but upsteams' 3.3.1 was already packaged in Debian
- under number 3.1.1 (Closes: #385255).
- * Swiching to collaborative maintainance: Maintainer is a mailing-list,
- Uploaders are real people.
- * Tidying the package:
- - Using debhelper v5 and conforming to policy 3.7.2.
- - Updated manpage using the template of docbook-xsl 1.71.0.dfsg.1-1.1.
- - Converted the manpage to unicode.
- - Relicenced the manpage to "same licence as Boxshade itself", with the
- agreement of Steffen.
- - Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control.
- - Removed empty files debian/dirs, debian/install, debian/conffiles.
- * Replaced clustalw (non-freee) by kalign (free)|clustalw in the Suggests field.
- * Changed priority to optional.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Sun, 25 Feb 2007 08:47:18 +0900
-
-boxshade (3.1.1-1) unstable; urgency=low
-
- * Initial Release (Closes: #234923).
-
- -- Steffen Moeller <moeller at pzr.uni-rostock.de> Thu, 26 Feb 2004 13:17:22 +0100
Copied: trunk/packages/boxshade/tags/3.3.1-3/changelog (from rev 1471, trunk/packages/boxshade/trunk/debian/changelog)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/changelog (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/changelog 2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,78 @@
+boxshade (3.3.1-3) unstable; urgency=low
+
+ [ David Paleino ]
+ * debian/boxshade.1 has been statically generated: this saves some
+ time (and space) on buildds (leaving the XML version for future
+ editing)
+ * debian/control:
+ - B-D updated (manpage is not generated on buildds anymore)
+ - added myself to Uploaders
+ - XS-Vcs-* moved to Vcs-* and fixed
+ - Homepage field now replaces the old pseudo-field in the long
+ description
+ - removed XS- from DM-Upload-Allowed
+ * debian/rules:
+ - reflecting static generation of boxshade.1 -- removing boxshade.1
+ target
+ - some general cleanup
+ * debian/README.Debian updated: the new debian-med.alioth.d.o website
+ is now mentioned.
+
+ [ Nelson A. de Oliveira ]
+ * Added watch file.
+
+ [ Andreas Tille ]
+ * Added myself to uploaders
+ * Added path to dh_installman
+ * Moved additional shellscript wrapper boxshade.sh to debian dir
+ * Added debian/get-orig-source script and added get-orig-source
+ target to debian/rules
+
+ -- Andreas Tille <tille at debian.org> Tue, 26 Feb 2008 07:28:42 +0100
+
+boxshade (3.3.1-2) unstable; urgency=low
+
+ [Charles Plessy]
+
+ * Debian Menu transition: Apps/Science becomes Applications/Science/Biology.
+ * makefile.unx : changes managed using the `quilt' patch system.
+ * makefile.unx : commenting `LDFLAGS= -s' so that stripping is handled by
+ dh_strip (Closes: #436605).
+ * debian/rules : `ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))' test
+ removed because dh_strip can work without.
+
+ [Steffen Moeller]
+
+ * Updated README.Debian with reference to Debian-Med
+ * Updated email address to moeller at debian.org
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Thu, 9 Aug 2007 10:38:31 +0900
+
+boxshade (3.3.1-1) unstable; urgency=low
+
+ [ Steffen Moeller ]
+ * Removed [biology] tag from description
+
+ [ Charles Plessy ]
+ * New version number, but upsteams' 3.3.1 was already packaged in Debian
+ under number 3.1.1 (Closes: #385255).
+ * Swiching to collaborative maintainance: Maintainer is a mailing-list,
+ Uploaders are real people.
+ * Tidying the package:
+ - Using debhelper v5 and conforming to policy 3.7.2.
+ - Updated manpage using the template of docbook-xsl 1.71.0.dfsg.1-1.1.
+ - Converted the manpage to unicode.
+ - Relicenced the manpage to "same licence as Boxshade itself", with the
+ agreement of Steffen.
+ - Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control.
+ - Removed empty files debian/dirs, debian/install, debian/conffiles.
+ * Replaced clustalw (non-freee) by kalign (free)|clustalw in the Suggests field.
+ * Changed priority to optional.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Sun, 25 Feb 2007 08:47:18 +0900
+
+boxshade (3.1.1-1) unstable; urgency=low
+
+ * Initial Release (Closes: #234923).
+
+ -- Steffen Moeller <moeller at pzr.uni-rostock.de> Thu, 26 Feb 2004 13:17:22 +0100
Deleted: trunk/packages/boxshade/tags/3.3.1-3/control
===================================================================
--- trunk/packages/boxshade/trunk/debian/control 2008-02-26 08:06:06 UTC (rev 1470)
+++ trunk/packages/boxshade/tags/3.3.1-3/control 2008-02-26 17:48:03 UTC (rev 1472)
@@ -1,29 +0,0 @@
-Source: boxshade
-Section: science
-Priority: optional
-Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <charles-debian-nospam at plessy.org>,
- David Paleino <d.paleino at gmail.com>
-Build-Depends: debhelper (>= 5), quilt
-Standards-Version: 3.7.3
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/boxshade/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/boxshade/trunk/
-Homepage: http://www.ch.embnet.org/software/BOX_form.html
-
-Package: boxshade
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: seaview, kalign | clustalw | mafft | hmmer, xfig, texlive-latex-extra
-Description: Pretty-printing of multiple sequence alignments
- Boxshade is a program for creating good looking printouts from
- multiple-aligned protein or DNA sequences. The program does not perform
- the alignment by itself and requires as input a file that was created
- by a multiple alignment program or manually edited with respective tools.
- .
- Boxshade reads multiple-aligned sequences from either PILEUP-MSF,
- CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum
- of 150 sequences with up to 10000 elements each). Various kinds of
- shading can be applied to identical/similar residues. Output is written
- to screen or to a file in the following formats: ANSI/VT100, PS/EPS,
- RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML
Copied: trunk/packages/boxshade/tags/3.3.1-3/control (from rev 1471, trunk/packages/boxshade/trunk/debian/control)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/control (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/control 2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,31 @@
+Source: boxshade
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Charles Plessy <charles-debian-nospam at plessy.org>,
+ David Paleino <d.paleino at gmail.com>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 5), quilt
+Standards-Version: 3.7.3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/boxshade/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/boxshade/trunk/
+Homepage: http://www.ch.embnet.org/software/BOX_form.html
+
+Package: boxshade
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests: seaview, kalign | clustalw | mafft | hmmer, xfig, texlive-latex-extra
+Description: Pretty-printing of multiple sequence alignments
+ Boxshade is a program for creating good looking printouts from
+ multiple-aligned protein or DNA sequences. The program does not perform
+ the alignment by itself and requires as input a file that was created
+ by a multiple alignment program or manually edited with respective tools.
+ .
+ Boxshade reads multiple-aligned sequences from either PILEUP-MSF,
+ CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum
+ of 150 sequences with up to 10000 elements each). Various kinds of
+ shading can be applied to identical/similar residues. Output is written
+ to screen or to a file in the following formats: ANSI/VT100, PS/EPS,
+ RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML
Copied: trunk/packages/boxshade/tags/3.3.1-3/get-orig-source (from rev 1471, trunk/packages/boxshade/trunk/debian/get-orig-source)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/get-orig-source (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/get-orig-source 2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,27 @@
+#!/bin/sh -e
+set -e
+# set -x
+NAME=boxshade
+VERSION=3.3.1
+UTARBALL=source.tar.Z
+downloadurl=ftp://www.isrec.isb-sib.ch/pub/software/unix/boxshade/3.3.1/
+
+TMPDIR=../tarballs
+mkdir -p "$TMPDIR"
+cd "$TMPDIR"
+
+if [ -e ${UTARBALL} ] ; then
+ echo "Using existing tarball ${UTARBALL}"
+else
+ wget --quiet ${downloadurl}/${UTARBALL}
+fi
+
+DISTDIR=${NAME}-${VERSION}
+mkdir -p ${DISTDIR}
+cd ${DISTDIR}
+tar -xzf ../"$UTARBALL"
+cd ..
+
+GZIP=-9 tar -czf "$NAME"_"$VERSION".orig.tar.gz "$NAME"-"$VERSION"
+
+rm -rf "$NAME"-"$VERSION"
Deleted: trunk/packages/boxshade/tags/3.3.1-3/rules
===================================================================
--- trunk/packages/boxshade/trunk/debian/rules 2008-02-26 08:06:06 UTC (rev 1470)
+++ trunk/packages/boxshade/tags/3.3.1-3/rules 2008-02-26 17:48:03 UTC (rev 1472)
@@ -1,71 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# GNU copyright 1997 to 1999 by Joey Hess.
-
-CFLAGS = -Wall -g
-
-ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
- CFLAGS += -O0
-else
- CFLAGS += -O2
-endif
-
-include /usr/share/quilt/quilt.make
-
-#XP=xsltproc \
-# --nonet \
-# --param man.charmap.use.subset "0" \
-# --param make.year.ranges "1" \
-# --param make.single.year.ranges "1"
-
-
-build: patch build-stamp
-build-stamp:
- dh_testdir
- $(MAKE) -f makefile.unx
- touch $@
-
-clean: clean-patched unpatch
-clean-patched: patch
- dh_testdir
- dh_testroot
- rm -f build-stamp
- $(MAKE) -f makefile.unx clean
- dh_clean boxshade.1
-
-install: build
- dh_testdir
- dh_testroot
- dh_clean -k
- dh_installdirs
-
- mkdir -p $(CURDIR)/debian/boxshade/usr/bin \
- $(CURDIR)/debian/boxshade/usr/lib/boxshade \
- $(CURDIR)/debian/boxshade/etc/boxshade || true
-
- cp boxshade.sh $(CURDIR)/debian/boxshade/usr/bin/boxshade
- cp boxshade $(CURDIR)/debian/boxshade/usr/lib/boxshade
- cp *.grp *.par *.sim $(CURDIR)/debian/boxshade/etc/boxshade
-
-
-binary-indep: build install
-binary-arch: build install
- dh_testdir
- dh_testroot
- dh_installchangelogs
- dh_installdocs
- dh_installmenu
- dh_installman boxshade.1
- dh_link
- dh_strip
- dh_compress
- dh_fixperms
- dh_installdeb
- dh_shlibdeps
- dh_gencontrol
- dh_md5sums
- dh_builddeb
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install
Copied: trunk/packages/boxshade/tags/3.3.1-3/rules (from rev 1471, trunk/packages/boxshade/trunk/debian/rules)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/rules (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/rules 2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,74 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# GNU copyright 1997 to 1999 by Joey Hess.
+
+CFLAGS = -Wall -g
+
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+ CFLAGS += -O0
+else
+ CFLAGS += -O2
+endif
+
+include /usr/share/quilt/quilt.make
+
+#XP=xsltproc \
+# --nonet \
+# --param man.charmap.use.subset "0" \
+# --param make.year.ranges "1" \
+# --param make.single.year.ranges "1"
+
+
+build: patch build-stamp
+build-stamp:
+ dh_testdir
+ $(MAKE) -f makefile.unx
+ touch $@
+
+clean: clean-patched unpatch
+clean-patched: patch
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+ $(MAKE) -f makefile.unx clean
+ dh_clean boxshade.1
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+ dh_installdirs
+
+ mkdir -p $(CURDIR)/debian/boxshade/usr/bin \
+ $(CURDIR)/debian/boxshade/usr/lib/boxshade \
+ $(CURDIR)/debian/boxshade/etc/boxshade || true
+
+ cp debian/boxshade.sh $(CURDIR)/debian/boxshade/usr/bin/boxshade
+ cp boxshade $(CURDIR)/debian/boxshade/usr/lib/boxshade
+ cp *.grp *.par *.sim $(CURDIR)/debian/boxshade/etc/boxshade
+
+
+binary-indep: build install
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs
+ dh_installdocs
+ dh_installmenu
+ dh_installman debian/boxshade.1
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+get-orig-source:
+ sh debian/get-orig-source
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
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