[med-svn] r2295 - in trunk/packages: . r-other-genabel r-other-genabel/trunk r-other-genabel/trunk/debian

[smoe-guest at alioth.debian.org]

Author: smoe-guest
Date: 2008-07-23 16:23:50 +0000 (Wed, 23 Jul 2008)
New Revision: 2295

Added:
   trunk/packages/r-other-genabel/
   trunk/packages/r-other-genabel/trunk/
   trunk/packages/r-other-genabel/trunk/debian/
   trunk/packages/r-other-genabel/trunk/debian/README.Debian
   trunk/packages/r-other-genabel/trunk/debian/changelog
   trunk/packages/r-other-genabel/trunk/debian/control
   trunk/packages/r-other-genabel/trunk/debian/copyright
   trunk/packages/r-other-genabel/trunk/debian/rules
   trunk/packages/r-other-genabel/trunk/debian/watch
Log:
Seems to work, need r-cran-genetics and others prior to upload.


Added: trunk/packages/r-other-genabel/trunk/debian/README.Debian
===================================================================
--- trunk/packages/r-other-genabel/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/r-other-genabel/trunk/debian/README.Debian	2008-07-23 16:23:50 UTC (rev 2295)
@@ -0,0 +1,13 @@
+The debian package name was changed fom GenABEL to r-other-genabel.
+This best reflects the origin of the package obvious.
+
+When using the package, please cite
+
+	Yurii S. Aulchenko, Stephan Ripke, Aaron Isaacs, Cornelia M. van Duijn
+	(2007) "GenABEL: an R library for genome-wide association analysis"
+	Bioinformatics 2007 23(10):1294-1296
+
+in your publications.
+
+
+-- Steffen Moeller <steffen_moeller at gmx.de>  Wed, 10 Oct 2007 13:43:39 +0200

Added: trunk/packages/r-other-genabel/trunk/debian/changelog
===================================================================
--- trunk/packages/r-other-genabel/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/r-other-genabel/trunk/debian/changelog	2008-07-23 16:23:50 UTC (rev 2295)
@@ -0,0 +1,5 @@
+r-other-genabel (1.4-0-1) unstable; urgency=low
+
+  * Initial release (Closes: #492044).
+
+ -- Steffen Moeller <moeller at debian.org>  Wed, 23 Jul 2008 15:43:37 +0200

Added: trunk/packages/r-other-genabel/trunk/debian/control
===================================================================
--- trunk/packages/r-other-genabel/trunk/debian/control	                        (rev 0)
+++ trunk/packages/r-other-genabel/trunk/debian/control	2008-07-23 16:23:50 UTC (rev 2295)
@@ -0,0 +1,26 @@
+Source: r-other-genabel
+Section: science
+Priority: optional
+Maintainer: Steffen Moeller <moeller at debian.org>
+Uploaders: Dirk Eddelbuettel <edd at debian.org>
+Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.7.0~20080408)
+Standards-Version: 3.8.0
+Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
+
+Package: r-other-genabel
+Architecture: any
+Depends: ${shlibs:Depends}, r-base-core (>= 2.7.0), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue
+Description: GNU R package for genome-wide SNP association analysis
+ The package offers the R library GenABEL for the hunt of genetic contributions
+ to a disease (or any other pheonypical trait) by so called genome-wide
+ association analysis. Additional input commonly comes from DNA mircoarray
+ experiments, performed on every individual, that determine differences
+ (polymorphisms) in the population. GenABEL finds associations between
+ quantitative or binary traits and single-nucleiotide polymorphisms
+ (SNPs). 
+ .
+ When publishing work based to which this package has contributed please
+ cite: Yurii S. Aulchenko, Stephan Ripke, Aaron Isaacs, Cornelia M. van Duijn
+ (2007) "GenABEL: an R library for genome-wide association analysis"
+ Bioinformatics 2007 23(10):1294-1296.
+

Added: trunk/packages/r-other-genabel/trunk/debian/copyright
===================================================================
--- trunk/packages/r-other-genabel/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/r-other-genabel/trunk/debian/copyright	2008-07-23 16:23:50 UTC (rev 2295)
@@ -0,0 +1,21 @@
+This is the Debian GNU/Linux r-other-geneabel package of GenABEL,
+performing statistical analyses of genome-wide SNP association
+studies. GenABEL was written by Karl W. Broman <kbroman at jhsph.edu>
+with Hao Wu <haowu at jax.org> and is maintained by Karl W. Broman.
+
+This package was created by Steffen Moeller <moeller at debian.org>, based on
+work for the r-cran-rodbc package of Dirk Eddelbuettel <edd at debian.org>.
+
+The sources were downloaded from http://mga.bionet.nsc.ru/nlru/GenABEL.
+
+The package was renamed from its upstream name 'GenABEL' to
+'r-other-genabel' to highlight the fact that is it a package for R
+outside the CRAN or other established archives, and to match Debian's
+convention of lowercase package names.
+
+GenABEL is copyright of Yurii Aulchenko, Maksim Struchalin, with
+contributions from Stephan Ripke and Toby Johnson and released under
+version 2 or later of the GNU General Public License (GPL).
+
+On a Debian GNU/Linux system, the GPL license is included in the file
+/usr/share/common-licenses/GPL.

Added: trunk/packages/r-other-genabel/trunk/debian/rules
===================================================================
--- trunk/packages/r-other-genabel/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/r-other-genabel/trunk/debian/rules	2008-07-23 16:23:50 UTC (rev 2295)
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-qtl package
+# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
+
+debRreposname=other
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/r-other-genabel/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
   + *

Added: trunk/packages/r-other-genabel/trunk/debian/watch
===================================================================
--- trunk/packages/r-other-genabel/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/r-other-genabel/trunk/debian/watch	2008-07-23 16:23:50 UTC (rev 2295)
@@ -0,0 +1,3 @@
+version=3
+http://mga.bionet.nsc.ru/nlru/GenABEL/GenABEL_(.*)\.tar\.gz
+