[med-svn] r2296 - in trunk/packages: . R R/r-cran-genetics R/r-cran-genetics/trunk R/r-cran-genetics/trunk/debian

Wed Jul 23 19:09:33 UTC 2008

Author: smoe-guest
Date: 2008-07-23 19:09:31 +0000 (Wed, 23 Jul 2008)
New Revision: 2296

Added:
   trunk/packages/R/
   trunk/packages/R/r-cran-genetics/
   trunk/packages/R/r-cran-genetics/trunk/
   trunk/packages/R/r-cran-genetics/trunk/debian/
   trunk/packages/R/r-cran-genetics/trunk/debian/README.Debian
   trunk/packages/R/r-cran-genetics/trunk/debian/changelog
   trunk/packages/R/r-cran-genetics/trunk/debian/compat
   trunk/packages/R/r-cran-genetics/trunk/debian/control
   trunk/packages/R/r-cran-genetics/trunk/debian/copyright
   trunk/packages/R/r-cran-genetics/trunk/debian/rules
   trunk/packages/R/r-cran-genetics/trunk/debian/watch
Log:
Adding r-cran-genetics, the first of some more R libraries
missing in order to get r-other-genabel to work.


Added: trunk/packages/R/r-cran-genetics/trunk/debian/README.Debian
===================================================================

--- trunk/packages/R/r-cran-genetics/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/README.Debian	2008-07-23 19:09:31 UTC (rev 2296)
@@ -0,0 +1,4 @@
+The debian package name was changed fom genetics on the CRAN archives to
+r-cran-genetics.  This best reflects the origin of the package obvious.
+
+-- Steffen Moeller <steffen_moeller at gmx.de>  Wed, 10 Oct 2007 13:43:39 +0200

Added: trunk/packages/R/r-cran-genetics/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/changelog	2008-07-23 19:09:31 UTC (rev 2296)
@@ -0,0 +1,5 @@
+r-cran-genetics (1.3.3-1) unstable; urgency=low
+
+  * Initial release.
+
+ -- Steffen Moeller <moeller at debian.org>  Wed, 23 Jul 2008 18:27:42 +0200

Added: trunk/packages/R/r-cran-genetics/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/compat	2008-07-23 19:09:31 UTC (rev 2296)
@@ -0,0 +1 @@
+5

Added: trunk/packages/R/r-cran-genetics/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/control	2008-07-23 19:09:31 UTC (rev 2296)
@@ -0,0 +1,21 @@
+Source: r-cran-genetics
+Section: science
+Priority: optional
+Maintainer: Steffen Moeller <moeller at debian.org>
+Uploaders: Dirk Eddelbuettel <edd at debian.org>
+Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.7.0~20080408)
+Standards-Version: 3.8.0
+Homepage: http://cran.r-project.org/web/packages/genetics
+
+Package: r-cran-genetics
+Architecture: all
+Depends: ${shlibs:Depends}, r-base-core (>= 2.7.0~20080408), r-recommended, r-cran-gtools, r-cran-gdata
+Description: GNU R package for population genetics
+ Classes and methods for handling genetic data. Includes
+ The package provides a library for the statistics environment R that
+ contains classes to represent genotypes and haplotypes at single markers up
+ to multiple markers on multiple chromosomes. Function include
+ allele frequencies, flagging homo/heterozygotes, flagging carriers
+ of certain alleles, estimating and testing for Hardy-Weinberg
+ disequilibrium, estimating and testing for linkage disequilibrium,
+ and more.

Added: trunk/packages/R/r-cran-genetics/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/copyright	2008-07-23 19:09:31 UTC (rev 2296)
@@ -0,0 +1,22 @@
+The R library genetics was written by Karl W. Broman <kbroman at jhsph.edu>
+with Hao Wu <haowu at jax.org> and is maintained by Karl W. Broman.
+
+This package was created by Steffen Moeller <moeller at debian.org>,
+based on work for the r-cran-rodbc package of Dirk
+Eddelbuettel <edd at debian.org>.
+
+The sources were downloaded from 
+	http://www.rqtl.org/download
+or
+	http://cran.r-project.org/src/contrib/
+
+The package was renamed from its upstream name 'genetics' to
+'r-cran-genetics' to highlight the fact that is it a package for R within
+the CRAN archive.
+
+Genetics is copyright of Gregory Warnes <warnes at bst.rochester.edu>, with
+contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man
+and released under the GNU General Public License (GPL).
+
+On a Debian GNU/Linux system, the GPL license is included in the file
+/usr/share/common-licenses/GPL.

Added: trunk/packages/R/r-cran-genetics/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/rules	2008-07-23 19:09:31 UTC (rev 2296)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-qtl package
+# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
+
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-cran-genetics/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
   + *

Added: trunk/packages/R/r-cran-genetics/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/watch	2008-07-23 19:09:31 UTC (rev 2296)
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/genetics_([-0-9\.]*)\.tar\.gz
+


