[med-svn] r2062 - trunk/packages/pdb2pqr/trunk/debian

[hauro-guest at alioth.debian.org]

Author: hauro-guest
Date: 2008-06-15 19:05:19 +0000 (Sun, 15 Jun 2008)
New Revision: 2062

Removed:
   trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.dirs
   trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.install
Modified:
   trunk/packages/pdb2pqr/trunk/debian/control
   trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.dirs
   trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.install
Log:
Dropped binary package again. (Lintian is now fine with the size.)


Modified: trunk/packages/pdb2pqr/trunk/debian/control
===================================================================
--- trunk/packages/pdb2pqr/trunk/debian/control	2008-06-15 18:57:02 UTC (rev 2061)
+++ trunk/packages/pdb2pqr/trunk/debian/control	2008-06-15 19:05:19 UTC (rev 2062)
@@ -14,26 +14,9 @@
 
 Package: pdb2pqr
 XB-Python-Version: ${python:Versions}
-Architecture: all
-Depends: pdb2pqr-bin (>= ${source:Version}), ${shlibs:Depends}, ${python:Depends}, python-numpy, python-xml
-Suggests: apbs
-Description: Preparation of protein structures for electrostatics calculations
- PDB2PQR is a Python software package that automates many of the common
- tasks of preparing structures for continuum electrostatics calculations.
- It thus provides a platform-independent utility for converting protein files
- in PDB format to PQR format. These tasks include:
-  * Adding a limited number of missing heavy atoms to biomolecular structures
-  * Determining side-chain pKas
-  * Placing missing hydrogens
-  * Optimizing the protein for favorable hydrogen bonding
-  * Assigning charge and radius parameters from a variety of force fields
-
-Package: pdb2pqr-bin
-XB-Python-Version: ${python:Versions}
 Architecture: any
 Depends: ${shlibs:Depends}, ${python:Depends}, python-numpy, python-xml
 Suggests: apbs
-Conflicts: pdb2pqr (<= 1.3.0-1)
 Description: Preparation of protein structures for electrostatics calculations
  PDB2PQR is a Python software package that automates many of the common
  tasks of preparing structures for continuum electrostatics calculations.
@@ -44,8 +27,6 @@
   * Placing missing hydrogens
   * Optimizing the protein for favorable hydrogen bonding
   * Assigning charge and radius parameters from a variety of force fields
- .
- This packages contains the binary parts of PDB2PQR.
 
 Package: pdb2pqr-doc
 Section: doc

Deleted: trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.dirs
===================================================================
--- trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.dirs	2008-06-15 18:57:02 UTC (rev 2061)
+++ trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.dirs	2008-06-15 19:05:19 UTC (rev 2062)
@@ -1,2 +0,0 @@
-/usr/lib/pdb2pqr/pdb2pka/substruct
-/usr/lib/pdb2pqr/propka

Deleted: trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.install
===================================================================
--- trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.install	2008-06-15 18:57:02 UTC (rev 2061)
+++ trunk/packages/pdb2pqr/trunk/debian/pdb2pqr-bin.install	2008-06-15 19:05:19 UTC (rev 2062)
@@ -1,3 +0,0 @@
-pdb2pka/_pMC_mult.so		usr/lib/pdb2pqr/pdb2pka
-pdb2pka/substruct/Algorithms.so	usr/lib/pdb2pqr/pdb2pka/substruct
-propka/_propkalib.so		usr/lib/pdb2pqr/propka

Modified: trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.dirs
===================================================================
--- trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.dirs	2008-06-15 18:57:02 UTC (rev 2061)
+++ trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.dirs	2008-06-15 19:05:19 UTC (rev 2062)
@@ -1,4 +1,6 @@
 /usr/bin
+/usr/lib/pdb2pqr/pdb2pka/substruct
+/usr/lib/pdb2pqr/propka
 /usr/share/doc/pdb2pqr
 /usr/share/man/man1
 /usr/share/pdb2pqr/dat

Modified: trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.install
===================================================================
--- trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.install	2008-06-15 18:57:02 UTC (rev 2061)
+++ trunk/packages/pdb2pqr/trunk/debian/pdb2pqr.install	2008-06-15 19:05:19 UTC (rev 2062)
@@ -6,3 +6,7 @@
 pdb2pka/ligandclean/*.py	usr/share/pdb2pqr/pdb2pka/ligandclean
 pdb2pka/substruct/*.py		usr/share/pdb2pqr/pdb2pka/substruct
 propka/*.py			usr/share/pdb2pqr/propka
+# Binary parts
+pdb2pka/_pMC_mult.so		usr/lib/pdb2pqr/pdb2pka
+pdb2pka/substruct/Algorithms.so	usr/lib/pdb2pqr/pdb2pka/substruct
+propka/_propkalib.so		usr/lib/pdb2pqr/propka