[med-svn] r1567 - in trunk/packages: . libbio-das-perl libbio-das-perl/trunk libbio-das-perl/trunk/debian

tille at alioth.debian.org tille at alioth.debian.org
Thu Mar 13 08:25:11 UTC 2008 

Author: tille
Date: 2008-03-13 08:25:10 +0000 (Thu, 13 Mar 2008)
New Revision: 1567

Added:
   trunk/packages/libbio-das-perl/
   trunk/packages/libbio-das-perl/trunk/
   trunk/packages/libbio-das-perl/trunk/README
   trunk/packages/libbio-das-perl/trunk/debian/
   trunk/packages/libbio-das-perl/trunk/debian/changelog
   trunk/packages/libbio-das-perl/trunk/debian/compat
   trunk/packages/libbio-das-perl/trunk/debian/control
   trunk/packages/libbio-das-perl/trunk/debian/copyright
   trunk/packages/libbio-das-perl/trunk/debian/rules
Log:
Moved Steffen M?\195?\182llers work which was stalled to svn to keep track of previous work.


Added: trunk/packages/libbio-das-perl/trunk/README
===================================================================
--- trunk/packages/libbio-das-perl/trunk/README	                        (rev 0)
+++ trunk/packages/libbio-das-perl/trunk/README	2008-03-13 08:25:10 UTC (rev 1567)
@@ -0,0 +1,3 @@
+Work on this project was started by Steffen Möller but has stalled.
+Feel free to take it over.
+

Added: trunk/packages/libbio-das-perl/trunk/debian/changelog
===================================================================
--- trunk/packages/libbio-das-perl/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/libbio-das-perl/trunk/debian/changelog	2008-03-13 08:25:10 UTC (rev 1567)
@@ -0,0 +1,6 @@
+libbio-das-perl (0.94-1) unstable; urgency=low
+
+  * Initial Release.
+
+ -- Steffen Moeller <moeller at pzr.uni-rostock.de>  Tue, 25 Jan 2005 00:20:14 +0100
+

Added: trunk/packages/libbio-das-perl/trunk/debian/compat
===================================================================
--- trunk/packages/libbio-das-perl/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/libbio-das-perl/trunk/debian/compat	2008-03-13 08:25:10 UTC (rev 1567)
@@ -0,0 +1 @@
+4

Added: trunk/packages/libbio-das-perl/trunk/debian/control
===================================================================
--- trunk/packages/libbio-das-perl/trunk/debian/control	                        (rev 0)
+++ trunk/packages/libbio-das-perl/trunk/debian/control	2008-03-13 08:25:10 UTC (rev 1567)
@@ -0,0 +1,19 @@
+Source: libbio-das-perl
+Section: perl
+Priority: optional
+Build-Depends: debhelper (>= 4.0.2)
+Build-Depends-Indep: perl (>= 5.8.0-7)
+Maintainer: Steffen Moeller <moeller at pzr.uni-rostock.de>
+Standards-Version: 3.6.1
+
+Package: libbio-das-perl
+Architecture: all
+Depends: ${perl:Depends}, ${misc:Depends}, 
+Suggests: dazzle
+Description: [Biology] interface to Distributed Annotation System (DAS)
+ Bio::Das provides access to genome sequencing and annotation databases
+ that export their data in Distributed Annotation System (DAS) format
+ version 1.5. Both unencrypted (http:) and SSL-encrypted (https:)
+ DAS servers are supported.
+ .
+  Homepage: http://www.biodas.org/

Added: trunk/packages/libbio-das-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/libbio-das-perl/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/libbio-das-perl/trunk/debian/copyright	2008-03-13 08:25:10 UTC (rev 1567)
@@ -0,0 +1,35 @@
+This is the debian package for the Bio-Das module.
+It was created by Steffen Moeller <moeller at pzr.uni-rostock.de> using dh-make-perl.
+
+The upstream author is: 
+
+Lincoln Stein <lstein at cshl.org>.
+
+Copyright (c) 2001 Cold Spring Harbor Laboratory
+
+The Bio::Das package and all associated files are Copyright (c)
+2001-2004 Cold Spring Harbor Laboratory.
+
+This library is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself.  See the Artistic License file
+in the main Perl distribution for specific terms and conditions of
+use. For Debian systems this file is usually installed at
+/usr/share/common-licenses/Artistic.
+
+In addition, the following disclaimers apply:
+
+CSHL makes no representations whatsoever as to the SOFTWARE contained
+herein.  It is experimental in nature and is provided WITHOUT WARRANTY
+OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
+WARRANTY, EXPRESS OR IMPLIED.  CSHL MAKES NO REPRESENTATION OR
+WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
+OTHER PROPRIETARY RIGHT.
+
+By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
+against any loss, claim, damage or liability, of whatsoever kind or
+nature, which may arise from your Institution's respective use,
+handling or storage of the SOFTWARE.
+
+If publications result from research using this SOFTWARE, we ask that
+CSHL be acknowledged and/or credit be given to CSHL scientists, as
+scientifically appropriate.

Added: trunk/packages/libbio-das-perl/trunk/debian/rules
===================================================================
--- trunk/packages/libbio-das-perl/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/libbio-das-perl/trunk/debian/rules	2008-03-13 08:25:10 UTC (rev 1567)
@@ -0,0 +1,90 @@
+#!/usr/bin/make -f
+# This debian/rules file is provided as a template for normal perl
+# packages. It was created by Marc Brockschmidt <marc at dch-faq.de> for
+# the Debian Perl Group (http://pkg-perl.alioth.debian.org/) but may
+# be used freely wherever it is useful.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+# If set to a true value then MakeMaker's prompt function will
+# always return the default without waiting for user input.
+export PERL_MM_USE_DEFAULT=1
+
+PACKAGE=$(shell dh_listpackages)
+
+ifndef PERL
+PERL = /usr/bin/perl
+endif
+
+TMP     =$(CURDIR)/debian/$(PACKAGE)
+
+# Allow disabling build optimation by setting noopt in
+# $DEB_BUILD_OPTIONS
+CFLAGS = -Wall -g
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+        CFLAGS += -O0
+else
+        CFLAGS += -O2
+endif
+
+build: build-stamp
+build-stamp:
+	dh_testdir
+
+	# Add commands to compile the package here
+	$(PERL) Makefile.PL INSTALLDIRS=vendor
+	$(MAKE) OPTIMIZE="$(CFLAGS)"
+	
+	touch build-stamp
+
+clean:
+	dh_testdir
+	dh_testroot
+
+	# Add commands to clean up after the build process here
+	-$(MAKE) distclean
+	
+	dh_clean build-stamp install-stamp
+
+install: install-stamp
+install-stamp: build-stamp
+	dh_testdir
+	dh_testroot
+	dh_clean -k
+
+	#$(MAKE) test
+	$(MAKE) install DESTDIR=$(TMP) PREFIX=/usr
+	
+	# As this is a architecture independent package, we are not supposed to install
+	# stuff to /usr/lib. MakeMaker creates the dirs, we delete them from the deb:
+	rmdir --ignore-fail-on-non-empty --parents $(TMP)/usr/lib/perl5
+
+	touch install-stamp
+
+binary-arch:
+# We have nothing to do by default.
+
+binary-indep: build install
+	dh_testdir
+	dh_testroot
+#	dh_installcron
+#	dh_installmenu
+#	dh_installexamples
+	dh_installdocs 
+	dh_installchangelogs ChangeLog
+	dh_perl
+	dh_link
+	dh_strip
+	dh_compress
+	dh_fixperms
+	dh_installdeb
+	dh_gencontrol
+	dh_md5sums
+	dh_builddeb
+
+source diff:                                                                  
+	@echo >&2 'source and diff are obsolete - use dpkg-source -b'; false
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary

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