[med-svn] r5171 - trunk/packages/ensembl/ensembl/57/debian

[Richard Holland]

Author: holland-guest
Date: 2010-08-20 14:10:25 +0000 (Fri, 20 Aug 2010)
New Revision: 5171

Modified:
   trunk/packages/ensembl/ensembl/57/debian/README.Debian
   trunk/packages/ensembl/ensembl/57/debian/control
Log:
Docs and deps for Ensembl.


Modified: trunk/packages/ensembl/ensembl/57/debian/README.Debian
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/README.Debian	2010-08-20 13:15:52 UTC (rev 5170)
+++ trunk/packages/ensembl/ensembl/57/debian/README.Debian	2010-08-20 14:10:25 UTC (rev 5171)
@@ -1,6 +1,6 @@
 ensembl for Debian
 ------------------
 
-<possible notes regarding this package - if none, delete this file>
+Apache modules enabled in postinst include perl, headers, expires and deflate. These do not get disabled again on uninstall.
 
  -- Richard Holland <holland at eaglegenomics.com>  Fri, 20 Aug 2010 14:46:17 +0200

Modified: trunk/packages/ensembl/ensembl/57/debian/control
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/control	2010-08-20 13:15:52 UTC (rev 5170)
+++ trunk/packages/ensembl/ensembl/57/debian/control	2010-08-20 14:10:25 UTC (rev 5171)
@@ -2,7 +2,7 @@
 Section: unknown
 Priority: extra
 Maintainer: Richard Holland <holland at eaglegenomics.com>
-Build-Depends: debhelper (>= 7.0.50~)
+Build-Depends: debhelper (>= 7.0.50~), apache2, csh, expat, libdb-dev, libexpat1-dev, libgd2-noxpm-dev, libgdbm-dev, libgtk2.0-dev, libmysqlclient15-dev, libperl-dev, libperl5.10, libreadline5-dev, msttcorefonts, mysql-client, perl, zlib1g-dev, acedb-other-dotter, libcgi-pm-perl, libcgi-ajax-perl, libcache-memcached-perl, libcgi-session-perl, libclass-dbi-sweet-perl, libclass-std-perl, libclass-std-utils-perl, libcompress-bzip2-perl, libfile-spec-perl, libdata-uuid-libuuid-perl, libdb-file-lock-perl, libdbd-mysql, libgd-text-perl, libhash-merge-perl, libhtml-parser-perl, liblist-moreutils-perl, liblog-log4perl-perl, libmailtools-perl, libwww-curl-perl, libapache2-mod-perl2, libnumber-format-perl, libgd-gd2-noxpm-perl, libpdf-api2-perl, libsys-hostname-long-perl, libtemplate-plugin-number-format-perl, libxml-dom-perl, libxml-rss-perl, libxml-simple-perl, libbsd-resource-perl, libxml-xpath-perl, libxml-atom-perl, libjson-perl, libclass-data-inheritable-perl, libconfig-inifiles-perl, libdevel-stacktrace-perl, libexception-class-perl, libhtml-template-perl, libimage-size-perl, libio-string-perl, libipc-run-perl, libxml-libxml-perl, libole-storage-lite-perl, libparse-recdescent-perl, libspreadsheet-writeexcel-perl, libio-zlib-perl, libmime-types-perl, libmath-bezier-perl, librtf-writer-perl, libbio-das-lite-perl, bioperl1.2.3, libparallel-user-agent-perl
 Standards-Version: 3.8.4
 Homepage: <insert the upstream URL, if relevant>
 #Vcs-Git: git://git.debian.org/collab-maint/ensembl.git
@@ -11,5 +11,17 @@
 Package: ensembl
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: <insert up to 60 chars description>
- <insert long description, indented with spaces>
+Description: Installs a basic Ensembl 57 genome browser.
+ The Ensembl 57 basic installation is a full copy of the public Ensembl
+ website, minus Blast and SSAHA, and minus BioMart. It uses UniSearch instead
+ of the engine used on the public site for searching by keyword. It connects
+ directly to the public databases hosted by the EBI/Sanger. 
+ .
+ This is meant as an easy way to get a basic Ensembl installation working on 
+ Debian. It can then be customised to local requirements.
+ . 
+ Note that Ensembl has two odd dependencies: bioperl1.2.3 and libparallel-user-agent-perl. The former will conflict with any other existing bioperl installation and force you to downgrade. The latter will conflict with the latest libwww-perl installation and force a downgrade to 5.808, which will disable many other tools on your system. Therefore it is advisable NOT to install this package in parallel with any other software, and/or use a virtual machine or dedicated machine. 
+ .
+ We will work to try and remove these dependencies and allow Ensembl to run on an up-do-date machine.
+ . 
+ Note also that Ensembl completely takes over the Apache instance that runs it. Therefore you cannot serve any other sites from the same port number as Ensembl is using. You either have to shutdown your existing Apache on port 80, or assign Ensembl a different port number.