[med-svn] [SCM] r-bioc-biobase branch, meta, updated. 40246d97c2e10ffed0e805a081a03f9d380ff24c
Charles Plessy
plessy at debian.org
Thu Aug 4 00:19:51 UTC 2011
The following commit has been merged in the meta branch:
commit b0ac687817f9007804b8022035a5f3d1578b1a56
Author: Charles Plessy <plessy at debian.org>
Date: Thu Aug 4 09:14:57 2011 +0900
Collected build logs for version in 2.12.1-1.
diff --git a/armel.log b/armel.log
new file mode 100644
index 0000000..35f3473
--- /dev/null
+++ b/armel.log
@@ -0,0 +1,1038 @@
+From buildd at alain.debian.org Sun May 15 20:58:37 2011
+Return-path: <buildd at alain.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at alain.debian.org>)
+ id 1QLiOb-0000tP-9D
+ for logs at buildd.debian.org; Sun, 15 May 2011 20:58:37 +0000
+Received: from alain.islands.arm.com ([217.140.96.58] helo=alain.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=alain.debian.org, EMAIL=hostmaster at alain.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at alain.debian.org>)
+ id 1QLiOa-0004dt-0u
+ for logs at buildd.debian.org; Sun, 15 May 2011 20:58:36 +0000
+Received: from buildd by alain.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at alain.debian.org>)
+ id 1QLiOY-0000wC-B5; Sun, 15 May 2011 20:58:34 +0000
+From: buildd on alain <buildd at alain.debian.org>
+To: buildd-porters at alain.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on armel
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QLiOY-0000wC-B5 at alain.debian.org>
+Date: Sun, 15 May 2011 20:58:34 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alain.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (armel) 15 May 2011 20:48 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Source Version: 2.12.1-1
+Architecture: armel
+Get:1 http://ftp.uk.debian.org unstable InRelease [167 kB]
+Get:2 http://incoming.debian.org unstable InRelease [167 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [5214 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5214 kB]
+Get:6 http://ftp.uk.debian.org unstable/contrib Sources [49.7 kB]
+Get:7 http://ftp.uk.debian.org unstable/non-free Sources [91.7 kB]
+Get:8 http://ftp.uk.debian.org unstable/main armel Packages [7123 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib armel Packages [54.0 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://ftp.uk.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [91.7 kB]
+Get:13 http://incoming.debian.org unstable/main armel Packages [7123 kB]
+Get:14 http://incoming.debian.org unstable/contrib armel Packages [54.0 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [28.2 kB]
+Get:18 http://incoming.debian.org Packages [339 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 25.8 MB in 1min 19s (325 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 1s (1736 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 29 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 29 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.2)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-2)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
+ libgomp1-dbg libquadmath-dbg libmudflap0-dbg binutils-gold gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 75 newly installed, 0 to remove and 21 not upgraded.
+Need to get 62.7 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.0-7 [28.3 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.0-7 [130 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.0-7 [296 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.0-7 [4302 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.0-7 [1708 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.0-7 [5194 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.0-7 [4549 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.0-7 [24.7 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.2 [205 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-5 [1077 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-1 [33.8 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-1 [989 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.04-5+b1 [235 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.04-5+b1 [49.4 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-3 [129 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-3 [258 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-2+b1 [821 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.6-1 [1535 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-1 [113 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-4 [409 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-3 [1981 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.93 [75.5 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7 [118 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.4-1 [375 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-2.2 [273 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-2.2 [334 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.0-7 [255 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.0-7 [4921 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.0-5 [1126 B]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2-8 [268 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2-8 [290 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-6 [34.6 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.21.8-1 [383 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.44-2 [173 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-1 [15.9 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-1 [21.5 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-2 [40.1 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.3-1 [834 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-2 [15.1 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-2 [9358 B]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-1 [30.4 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6 [921 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-2 [24.6 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-1 [50.2 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 armel 6b1-1 [90.1 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62-dev armel 6b1-1 [195 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.0-4 [2146 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.0-4 [2348 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-1 [474 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-1 [40.0 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-2 [55.0 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.28.3-6 [411 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24 [22.5 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24 [18.7 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-3 [112 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-3 [301 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.44-2 [262 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-1 [238 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-1 [880 B]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-1 [28.1 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-1 [191 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-1 [45.8 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-1 [16.0 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-1 [179 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-3 [331 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-4 [191 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.9-2 [1562 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.9-2 [1138 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.13.0-1 [15.0 MB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 62.7 MB in 20s (3098 kB/s)
+(Reading database ... 10482 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-7_armel.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-7_armel.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-7) ...
+(Reading database ... 10482 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-7_armel.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-7) ...
+(Reading database ... 10482 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-7_armel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-7_armel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-7_armel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-7_armel.deb) ...
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+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-7_armel.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-7) ...
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+Moving old data out of the way
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+Selecting previously deselected package intltool-debian.
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+Selecting previously deselected package fontconfig-config.
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+Selecting previously deselected package libfontconfig1.
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+Selecting previously deselected package fontconfig.
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+Selecting previously deselected package liblapack3gf.
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+Selecting previously deselected package xdg-utils.
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+Selecting previously deselected package tcl8.5.
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+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_armel.deb) ...
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+Selecting previously deselected package r-base-dev.
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+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
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+Setting up libpipeline1 (1.2.0-1) ...
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+Setting up libmagic1 (5.04-5+b1) ...
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+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-1) ...
+Setting up libreadline-dev (6.2-1) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.0-7) ...
+Setting up g++-4.6 (4.6.0-7) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 21 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32 armel (armv5tel)
+Toolchain package versions: binutils_2.21.51.20110421-3 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 libc6-dev_2.13-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-3
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture armel
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `update-config'.
+ fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1'
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-armel-U9mZvr/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (alain) <buildd_armel-alain at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_armel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-2058
+
+r-bioc-biobase_2.12.1-1_armel.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: armel
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: armel Build Daemon (alain) <buildd_armel-alain at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ 814373b559b6a3c5309de2dbcc3abfcbad17c91b 2675164 r-bioc-biobase_2.12.1-1_armel.deb
+Checksums-Sha256:
+ 1d15deb371674fcf975c5d2822f8cba50b9a2a9ceac2aabc9713b1e3553fab60 2675164 r-bioc-biobase_2.12.1-1_armel.deb
+Files:
+ 1cb191d107200df1b0dcd2d20c48fc70 2675164 gnu-r optional r-bioc-biobase_2.12.1-1_armel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_armel.deb
+─────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2675164 bytes: control archive= 4905 bytes.
+ 1187 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: armel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3736
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
+drwxr-xr-x root/root 0 2011-05-15 20:57 ./
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+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
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+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
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+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: armel
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+Source-Version: 2.12.1-1
+Space: 9980
+Status: successful
+Version: 2.12.1-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-2058
+Build needed 00:09:31, 9980k disc space
+Signature with key 'C75C8F58' requested:
+
diff --git a/hurd-i386.log b/hurd-i386.log
new file mode 100644
index 0000000..eda7782
--- /dev/null
+++ b/hurd-i386.log
@@ -0,0 +1,872 @@
+From buildd at mozart.debian.net Sun May 15 14:33:11 2011
+Return-path: <buildd at mozart.debian.net>
+Received: from callisto.debian.net ([80.87.129.151])
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mozart.debian.net>)
+ id 1QLcNb-0007MR-0w
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:33:11 +0000
+Received: from mozart.debian.net ([10.1.0.1])
+ by callisto.debian.net with esmtp (Exim 4.69)
+ (envelope-from <buildd at mozart.debian.net>)
+ id 1QLcNZ-0000zU-6C; Sun, 15 May 2011 15:33:09 +0100
+Received: from buildd by mozart.debian.net with local (Exim 4.72)
+ (envelope-from <buildd at mozart.debian.net>)
+ id 1QLcNZ-0002zU-5X; Sun, 15 May 2011 14:33:09 +0000
+Date: Sun, 15 May 2011 14:33:09 +0000
+Message-Id: <E1QLcNZ-0002zU-5X at mozart.debian.net>
+From: Build Daemon <buildd at mozart.debian.net>
+To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at buildd.debian-ports.org,
+ logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on hurd-i386
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.59.1 (31 Jan 2010) on mozart.debian.net
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (hurd-i386) 15 mai 2011 14:22 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Architecture: hurd-i386
+Chroot Build Dir: /home/buildd/build/chroot-sid/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt
+Start Time: 20110515-1422
+Ign file: ./ InRelease
+Ign file: ./ Release.gpg
+Ign file: ./ Release
+Ign file: ./ Translation-en
+Hit http://ftp.uk.debian.org sid InRelease
+Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
+Ign http://ftp.debian-ports.org unreleased InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex
+Ign http://ftp.uk.debian.org sid/contrib TranslationIndex
+Hit http://ftp.uk.debian.org sid/main TranslationIndex
+Ign http://ftp.uk.debian.org sid/non-free TranslationIndex
+Hit http://ftp.debian-ports.org unreleased Release.gpg
+Hit http://incoming.debian.org Release.gpg
+Ign http://ftp.uk.debian.org sid/contrib Translation-en
+Ign http://ftp.uk.debian.org sid/non-free Translation-en
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://ftp.debian-ports.org unreleased Release
+Hit http://incoming.debian.org Packages
+Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
+Ign http://incoming.debian.org Translation-en
+Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
+Ign http://ftp.debian-ports.org unreleased/main Translation-en
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 7s (289 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+** Using build dependencies supplied by package:
+Build-Depends: cdbs, debhelper (>= 8), r-base-dev
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Checking for already installed source dependencies...
+cdbs: missing
+debhelper: already installed (8.1.3 >= 8 is satisfied)
+r-base-dev: missing
+Checking for source dependency conflicts...
+Installing positive dependencies: cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libboost-iostreams1.46.1 libsysfs2
+Use 'apt-get autoremove' to remove them.
+The following extra packages will be installed:
+ cpp-4.6 dpatch g++-4.6 gcc-4.6 gcc-4.6-base gfortran gfortran-4.6
+ libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libgcc1 libgfortran3
+ libgomp1 libice6 libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
+ libpcrecpp0 libpixman-1-0 libpng12-dev libquadmath0 libreadline-dev
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
+ libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core tcl8.5
+ tk8.5 unzip x11-common xdg-utils zip
+Suggested packages:
+ devscripts gcc-4.6-locales curl gcc-4.6-doc libstdc++6-4.6-dbg
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath0-dbg
+ libmudflap0-dbg gfortran-doc gfortran-4.6-doc libgfortran3-dbg ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc ess r-doc-info r-doc-pdf r-mathlib
+ r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs dpatch gfortran gfortran-4.6 libblas-dev libblas3gf libbz2-dev
+ libcairo2 libdatrie1 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxrender1 libxss1 libxt6 r-base-core r-base-dev tcl8.5 tk8.5 unzip
+ x11-common xdg-utils zip
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgfortran3 libgomp1
+ libquadmath0 libstdc++6 libstdc++6-4.6-dev
+10 upgraded, 48 newly installed, 0 to remove and 71 not upgraded.
+Need to get 21.3 MB/52.3 MB of archives.
+After this operation, 85.0 MB of additional disk space will be used.
+WARNING: The following packages cannot be authenticated!
+ libgomp1 gcc-4.6-base libstdc++6 libgfortran3 cpp-4.6 libquadmath0
+ libstdc++6-4.6-dev g++-4.6 gcc-4.6 libgcc1 cdbs dpatch gfortran-4.6 gfortran
+ libblas3gf libblas-dev libbz2-dev libpixman-1-0 libxau6 libxdmcp6 libxcb1
+ libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1 libcairo2
+ libdatrie1 x11-common libice6 libjpeg62 libjpeg62-dev liblapack3gf
+ liblapack-dev libncurses5-dev libthai-data libthai0 libxft2 libpango1.0-0
+ libpaper1 libpaper-utils libpcrecpp0 libpcre3-dev libpng12-dev
+ libreadline6-dev libreadline-dev libsm6 libtiff4 libxext6 libxss1 libxt6 zip
+ unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev
+Authentication warning overridden.
+Get:1 http://ftp.uk.debian.org/debian/ sid/main libgomp1 hurd-i386 4.6.0-7 [27.7 kB]
+Get:2 http://ftp.uk.debian.org/debian/ sid/main gcc-4.6-base hurd-i386 4.6.0-7 [130 kB]
+Get:3 http://ftp.uk.debian.org/debian/ sid/main libstdc++6 hurd-i386 4.6.0-7 [353 kB]
+Get:4 http://ftp.uk.debian.org/debian/ sid/main libgfortran3 hurd-i386 4.6.0-7 [355 kB]
+Get:5 http://ftp.uk.debian.org/debian/ sid/main cpp-4.6 hurd-i386 4.6.0-7 [4239 kB]
+Get:6 http://ftp.uk.debian.org/debian/ sid/main libquadmath0 hurd-i386 4.6.0-7 [195 kB]
+Get:7 http://ftp.uk.debian.org/debian/ sid/main libstdc++6-4.6-dev hurd-i386 4.6.0-7 [1562 kB]
+Get:8 http://ftp.uk.debian.org/debian/ sid/main g++-4.6 hurd-i386 4.6.0-7 [4654 kB]
+Get:9 http://ftp.uk.debian.org/debian/ sid/main gcc-4.6 hurd-i386 4.6.0-7 [4714 kB]
+Get:10 http://ftp.uk.debian.org/debian/ sid/main libgcc1 hurd-i386 1:4.6.0-7 [54.3 kB]
+Get:11 http://ftp.uk.debian.org/debian/ sid/main gfortran-4.6 hurd-i386 4.6.0-7 [4974 kB]
+
+Extracting templates from packages: 51%
+Extracting templates from packages: 100%
+Preconfiguring packages ...
+Fetched 21.3 MB in 15s (1337 kB/s)
+(Reading database ... 16660 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-7) ...
+(Reading database ... 16660 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-7) ...
+(Reading database ... 16660 files and directories currently installed.)
+Preparing to replace libgfortran3 4.6.0-6 (using .../libgfortran3_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement libgfortran3 ...
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libquadmath0 4.6.0-6 (using .../libquadmath0_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement libquadmath0 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-7_hurd-i386.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-7) ...
+Selecting previously deselected package cdbs.
+(Reading database ... 16660 files and directories currently installed.)
+Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_hurd-i386.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_hurd-i386.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_hurd-i386.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_hurd-i386.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_hurd-i386.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_hurd-i386.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_hurd-i386.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_hurd-i386.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_hurd-i386.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_hurd-i386.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_hurd-i386.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_hurd-i386.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_hurd-i386.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_hurd-i386.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_hurd-i386.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_hurd-i386.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_hurd-i386.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_hurd-i386.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_hurd-i386.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_hurd-i386.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_hurd-i386.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_hurd-i386.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24_hurd-i386.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_hurd-i386.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3+b1_hurd-i386.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3+b1_hurd-i386.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_hurd-i386.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_hurd-i386.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_hurd-i386.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_hurd-i386.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_hurd-i386.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_hurd-i386.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_hurd-i386.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_hurd-i386.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../zip_3.0-3_hurd-i386.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_hurd-i386.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_hurd-i386.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_hurd-i386.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_hurd-i386.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Processing triggers for man-db ...
+Processing triggers for install-info ...
+Setting up libgomp1 (4.6.0-7) ...
+Setting up libquadmath0 (4.6.0-7) ...
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up cpp-4.6 (4.6.0-7) ...
+Setting up gcc-4.6 (4.6.0-7) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3+b1) ...
+Setting up libpcre3-dev (8.12-3+b1) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-1) ...
+Setting up libreadline-dev (6.2-1) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Setting up g++-4.6 (4.6.0-7) ...
+Setting up libstdc++6-4.6-dev (4.6.0-7) ...
+Removing negative dependencies:
+Checking correctness of source dependencies...
+Kernel: GNU 0.3 hurd-i386 (i686-AT386)
+Toolchain package versions: libc0.3-dev_2.11.2-13 dpkg-dev_1.16.0.2 hurd-dev_20110303-1~1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gcc-4.6_4.6.0-7 g++-4.6_4.6.0-7 binutils_2.21.51.20110419-2 libstdc++6-4.6-dev_4.6.0-7 libstdc++6_4.6.0-7
+Package versions: adduser_3.112+nmu1 apt_0.8.11.5+b1 apt-utils_0.8.11.5+b1 base-files_5.9 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.51.20110419-2 bsdmainutils_8.0.13 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.4_4.4.5-10 cpp-4.5_4.5.3-1 cpp-4.6_4.6.0-7 cron_3.0pl1-115 dash_0.5.5.1-7 debconf_1.5.35 debconf-english_1.5.35 debfoster_2.6-2 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_3.4.1 deborphan_1.7.28 dialog_1.1-20100428-1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.15.8.5 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.03-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.4-2 g++-4.4_4.4.5-10 g++-4.5_4.5.3-1 g++-4.6_4.6.0-7 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-5 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gcc-4.5_4.5.3-1 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.4_4.4.5-10 gfortran-4.6_4.6.0-7 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gnupg_1.4.10-4 gobjc-4.4_4.4.5-10 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15+b1 hurd_20110319-2 hurd-dev_20110303-1~1 initscripts_2.88dsf-12 insserv_1.14.0-2 install-info_4.13a.dfsg.1-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libapt-pkg-dev_0.8.11.5+b1 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.16.2-0 libboost-iostreams1.46.1_1.46.1-4 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.3_2.11.2-13 libc0.3-dev_2.11.2-13 libc0.3-xen_2.11.2-13 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-2 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.8_4.8.30-5 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libelfg0_0.8.13-1 libept-dev_1.0.3+b2 libept1_1.0.3+b2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgcc1_1:4.6.0-7 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libglib2.0-data_2.28.0-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-1+b1 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.4-2 libgomp1_4.6.0-7 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libidn11_1.20-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.03-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libobjc2_4.4.5-10 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-3+b1 libpcre3-dev_8.12-3+b1 libpcrecpp0_8.12-3+b1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpopt0_1.16-1 libppl-c2_0.10.2-9 libppl7_0.10.2-9 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libquadmath0_4.6.0-7 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libsasl2-2_2.1.23.dfsg1-8 libsasl2-modules_2.1.23.dfsg1-8 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libssl0.9.8_0.9.8o-5 libssl1.0.0_1.0.0d-2 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.5-10 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-7 libsysfs2_2.1.0+repack-1 libtagcoll2-dev_2.0.11-1.1 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libuuid1_2.16.2-0 libwibble-dev_0.1.26-1 libwrap0_7.6.dbs-14+hurd.2 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxapian-dev_1.2.3-2 libxapian22_1.2.3-2 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 lsb-base_3.2-25 lynx-cur_2.8.8dev.8-1 make_3.81-8 man-db_2.5.7-4 mawk_1.3.3-15 mime-support_3.48-1 ncurses-base_5.7+20100313-4 ncurses-bin_5.9-1 netbase_4.42 netcat-traditional_1.10-38 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 pkg-config_0.25-1.1 po-debconf_1.0.16 procps_1:3.2.7-11 psmisc_22.3-1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sgml-base_1.26+nmu1 shared-mime-info_0.71-3 sudo_1.7.2p7-1 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-freefont_20100919-1 type-handling_0.2.23 tzdata_2010m-1 ucf_3.0025+nmu1 unzip_6.0-4 util-linux_2.16.2-0 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xml-core_0.13 xz-utils_4.999.9beta+20100810-1 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture hurd-i386
+ /usr/bin/fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+ debian/rules build
+rm -f config.log config.status
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+ /usr/bin/fakeroot debian/rules binary-arch
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/src'
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_hurd-i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1431
+
+r-bioc-biobase_2.12.1-1_hurd-i386.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: hurd-i386
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ 5b5caaa044b2bcf71fda80a4a9143a779a2f5f17 2671980 r-bioc-biobase_2.12.1-1_hurd-i386.deb
+Checksums-Sha256:
+ 4cffecfc45fdcbd957a33c85c62b39fd1d8330ad589396d21dec624eef475b14 2671980 r-bioc-biobase_2.12.1-1_hurd-i386.deb
+Files:
+ 777e8c1c90c5be6c95314e74c3c2d748 2671980 gnu-r optional r-bioc-biobase_2.12.1-1_hurd-i386.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_hurd-i386.deb
+─────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2671980 bytes: control archive= 4899 bytes.
+ 1194 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: hurd-i386
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3740
+ Depends: libc0.3 (>= 2.11), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
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+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+Purging /home/buildd/build/chroot-sid/build/buildd-r-bioc-biobase_2.12.1-1-hurd-i386-_5F9Rt
+(Reading database ... 19106 files and directories currently installed.)
+Removing cdbs ...
+Removing r-base-dev ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing gfortran ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
+Removing liblapack-dev ...
+Removing xdg-utils ...
+Removing zip ...
+Removing libpaper-utils ...
+Removing libpcre3-dev ...
+Removing libbz2-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libreadline-dev ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing libjpeg62-dev ...
+Removing libreadline6-dev ...
+Removing libpng12-dev ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libncurses5-dev ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libblas-dev ...
+Removing gfortran-4.6 ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libthai-data ...
+Removing libjpeg62 ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Processing triggers for man-db ...
+Processing triggers for install-info ...
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1431
+Build needed 00:09:23, 9980k disc space
+
diff --git a/i386.log b/i386.log
new file mode 100644
index 0000000..c4352e5
--- /dev/null
+++ b/i386.log
@@ -0,0 +1,971 @@
+From buildd at biber.debian.org Sun May 15 13:22:08 2011
+Return-path: <buildd at biber.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
+ id 1QLbGp-0004ps-S7
+ for logs at buildd.debian.org; Sun, 15 May 2011 13:22:08 +0000
+Received: from biber.debian.org ([2001:648:2ffc:deb:214:22ff:feb2:1268])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=biber.debian.org, EMAIL=hostmaster at biber.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
+ id 1QLbGo-0007pI-Lj; Sun, 15 May 2011 13:22:06 +0000
+Received: from buildd by biber.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at biber.debian.org>)
+ id 1QLbGn-0006p1-Qh; Sun, 15 May 2011 13:22:05 +0000
+Message-Id: <E1QLbGn-0006p1-Qh at biber.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Sun, 15 May 2011 13:22:05 +0000
+From: buildd on biber <buildd at biber.debian.org>
+To: kurt at roeckx.be,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on i386 (dist=sid)
+Key-Id: 44C3EAC7
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on biber.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (i386) 15 May 2011 13:19 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Source Version: 2.12.1-1
+Architecture: i386
+Get:1 http://ftp.gr.debian.org unstable InRelease [167 kB]
+Get:2 http://ftp.gr.debian.org unstable/main Sources [5217 kB]
+Get:3 http://incoming.debian.org unstable InRelease [167 kB]
+Get:4 http://ftp.gr.debian.org unstable/contrib Sources [50.1 kB]
+Get:5 http://ftp.gr.debian.org unstable/non-free Sources [91.5 kB]
+Get:6 http://ftp.gr.debian.org unstable/main i386 Packages [7288 kB]
+Get:7 http://ftp.gr.debian.org unstable/contrib i386 Packages [64.6 kB]
+Ign http://incoming.debian.org InRelease
+Ign http://ftp.gr.debian.org unstable/contrib TranslationIndex
+Get:8 http://ftp.gr.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://ftp.gr.debian.org unstable/contrib Translation-en
+Get:9 http://incoming.debian.org Release.gpg [836 B]
+Get:10 http://incoming.debian.org unstable/main Sources [5215 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [50.1 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [91.5 kB]
+Get:13 http://incoming.debian.org unstable/main i386 Packages [7288 kB]
+Get:14 http://incoming.debian.org unstable/contrib i386 Packages [64.6 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.9 kB]
+Get:18 http://incoming.debian.org Packages [360 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 26.2 MB in 13s (1940 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 2s (855 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-2)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+0 upgraded, 75 newly installed, 0 to remove and 9 not upgraded.
+Need to get 48.8 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 8.2.2 [200 kB]
+Get:2 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.21-5 [1125 kB]
+Get:3 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 i386 1.2.0-1 [35.6 kB]
+Get:4 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.6.0.2-1 [991 kB]
+Get:5 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.04-5+b1 [233 kB]
+Get:6 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.04-5+b1 [49.4 kB]
+Get:7 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-3 [130 kB]
+Get:8 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 8.12-3 [255 kB]
+Get:9 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.7.8.dfsg-2+b1 [831 kB]
+Get:10 http://ftp.gr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:11 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
+Get:12 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.28.6-1 [1503 kB]
+Get:13 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.2-1 [116 kB]
+Get:14 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-4 [431 kB]
+Get:15 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-3 [1973 kB]
+Get:16 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:17 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:18 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:19 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.93 [75.5 kB]
+Get:20 http://ftp.gr.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:21 http://ftp.gr.debian.org/debian/ unstable/main libexpat1 i386 2.0.1-7 [138 kB]
+Get:22 http://ftp.gr.debian.org/debian/ unstable/main libfreetype6 i386 2.4.4-1 [398 kB]
+Get:23 http://ftp.gr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:24 http://ftp.gr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:25 http://ftp.gr.debian.org/debian/ unstable/main libfontconfig1 i386 2.8.0-2.2 [274 kB]
+Get:26 http://ftp.gr.debian.org/debian/ unstable/main fontconfig i386 2.8.0-2.2 [333 kB]
+Get:27 http://ftp.gr.debian.org/debian/ unstable/main libgfortran3 i386 4.6.0-7 [355 kB]
+Get:28 http://ftp.gr.debian.org/debian/ unstable/main gfortran-4.6 i386 4.6.0-7 [5346 kB]
+Get:29 http://ftp.gr.debian.org/debian/ unstable/main gfortran i386 4:4.6.0-5 [1132 B]
+Get:30 http://ftp.gr.debian.org/debian/ unstable/main libblas3gf i386 1.2-8 [211 kB]
+Get:31 http://ftp.gr.debian.org/debian/ unstable/main libblas-dev i386 1.2-8 [218 kB]
+Get:32 http://ftp.gr.debian.org/debian/ unstable/main libbz2-dev i386 1.0.5-6 [31.6 kB]
+Get:33 http://ftp.gr.debian.org/debian/ unstable/main libpixman-1-0 i386 0.21.8-1 [355 kB]
+Get:34 http://ftp.gr.debian.org/debian/ unstable/main libpng12-0 i386 1.2.44-2 [176 kB]
+Get:35 http://ftp.gr.debian.org/debian/ unstable/main libxau6 i386 1:1.0.6-1 [16.1 kB]
+Get:36 http://ftp.gr.debian.org/debian/ unstable/main libxdmcp6 i386 1:1.1.0-1 [21.9 kB]
+Get:37 http://ftp.gr.debian.org/debian/ unstable/main libxcb1 i386 1.7-2 [40.7 kB]
+Get:38 http://ftp.gr.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:39 http://ftp.gr.debian.org/debian/ unstable/main libx11-6 i386 2:1.4.3-1 [853 kB]
+Get:40 http://ftp.gr.debian.org/debian/ unstable/main libxcb-render0 i386 1.7-2 [15.0 kB]
+Get:41 http://ftp.gr.debian.org/debian/ unstable/main libxcb-shm0 i386 1.7-2 [9040 B]
+Get:42 http://ftp.gr.debian.org/debian/ unstable/main libxrender1 i386 1:0.9.6-1 [29.3 kB]
+Get:43 http://ftp.gr.debian.org/debian/ unstable/main libcairo2 i386 1.10.2-6 [934 kB]
+Get:44 http://ftp.gr.debian.org/debian/ unstable/main libdatrie1 i386 0.2.4-2 [26.4 kB]
+Get:45 http://ftp.gr.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:46 http://ftp.gr.debian.org/debian/ unstable/main libice6 i386 2:1.0.7-1 [52.2 kB]
+Get:47 http://ftp.gr.debian.org/debian/ unstable/main libjpeg62 i386 6b1-1 [88.0 kB]
+Get:48 http://ftp.gr.debian.org/debian/ unstable/main libjpeg62-dev i386 6b1-1 [189 kB]
+Get:49 http://ftp.gr.debian.org/debian/ unstable/main liblapack3gf i386 3.3.0-4 [3227 kB]
+Get:50 http://ftp.gr.debian.org/debian/ unstable/main liblapack-dev i386 3.3.0-4 [3385 kB]
+Get:51 http://ftp.gr.debian.org/debian/ unstable/main libncurses5-dev i386 5.9-1 [467 kB]
+Get:52 http://ftp.gr.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:53 http://ftp.gr.debian.org/debian/ unstable/main libthai0 i386 0.1.15-1 [40.9 kB]
+Get:54 http://ftp.gr.debian.org/debian/ unstable/main libxft2 i386 2.2.0-2 [54.7 kB]
+Get:55 http://ftp.gr.debian.org/debian/ unstable/main libpango1.0-0 i386 1.28.3-6 [410 kB]
+Get:56 http://ftp.gr.debian.org/debian/ unstable/main libpaper1 i386 1.1.24 [20.9 kB]
+Get:57 http://ftp.gr.debian.org/debian/ unstable/main libpaper-utils i386 1.1.24 [17.8 kB]
+Get:58 http://ftp.gr.debian.org/debian/ unstable/main libpcrecpp0 i386 8.12-3 [113 kB]
+Get:59 http://ftp.gr.debian.org/debian/ unstable/main libpcre3-dev i386 8.12-3 [300 kB]
+Get:60 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.3.4.dfsg-3 [186 kB]
+Get:61 http://ftp.gr.debian.org/debian/ unstable/main libpng12-dev i386 1.2.44-2 [261 kB]
+Get:62 http://ftp.gr.debian.org/debian/ unstable/main libreadline6-dev i386 6.2-1 [235 kB]
+Get:63 http://ftp.gr.debian.org/debian/ unstable/main libreadline-dev i386 6.2-1 [880 B]
+Get:64 http://ftp.gr.debian.org/debian/ unstable/main libsm6 i386 2:1.2.0-1 [29.1 kB]
+Get:65 http://ftp.gr.debian.org/debian/ unstable/main libtiff4 i386 3.9.5-1 [187 kB]
+Get:66 http://ftp.gr.debian.org/debian/ unstable/main libxext6 i386 2:1.3.0-1 [52.2 kB]
+Get:67 http://ftp.gr.debian.org/debian/ unstable/main libxss1 i386 1:1.2.1-1 [16.0 kB]
+Get:68 http://ftp.gr.debian.org/debian/ unstable/main libxt6 i386 1:1.1.1-1 [185 kB]
+Get:69 http://ftp.gr.debian.org/debian/ unstable/main zip i386 3.0-3 [316 kB]
+Get:70 http://ftp.gr.debian.org/debian/ unstable/main unzip i386 6.0-4 [179 kB]
+Get:71 http://ftp.gr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:72 http://ftp.gr.debian.org/debian/ unstable/main tcl8.5 i386 8.5.9-2 [1587 kB]
+Get:73 http://ftp.gr.debian.org/debian/ unstable/main tk8.5 i386 8.5.9-2 [1143 kB]
+Get:74 http://ftp.gr.debian.org/debian/ unstable/main r-base-core i386 2.13.0-1 [14.7 MB]
+Get:75 http://ftp.gr.debian.org/debian/ unstable/main r-base-dev all 2.13.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 48.8 MB in 5s (9457 kB/s)
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+No schema files found: doing nothing.
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+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
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+All runlevel operations denied by policy
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+
+Creating config file /etc/papersize with new version
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+
+Creating config file /etc/R/Renviron with new version
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+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-amd64 i386 (x86_64)
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+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture i386
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1322
+
+r-bioc-biobase_2.12.1-1_i386.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: i386
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: i386 Build Daemon <buildd_i386-biber at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ 7b2eef138916abf0a96089c14955406fc4d8bc80 2675370 r-bioc-biobase_2.12.1-1_i386.deb
+Checksums-Sha256:
+ 2e3ff9db21774064b8ad914b46d2bd98824b68946af9683e7641784b3304ff0f 2675370 r-bioc-biobase_2.12.1-1_i386.deb
+Files:
+ 80aa745b1734ed62e110df1e0eb58b0b 2675370 gnu-r optional r-bioc-biobase_2.12.1-1_i386.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_i386.deb
+────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2675370 bytes: control archive= 4896 bytes.
+ 1186 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: i386
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3740
+ Depends: libc6 (>= 2.3), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 475 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 3432 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+-rw-r--r-- root/root 5635 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+-rw-r--r-- root/root 5631 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 1357 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 1016 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 322 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 715 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+-rw-r--r-- root/root 109039 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+-rw-r--r-- root/root 2870 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/NAMESPACE
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/
+-rw-r--r-- root/root 28377 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
+-rw-r--r-- root/root 1426 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/index.html
+-rw-r--r-- root/root 3067 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
+-rw-r--r-- root/root 267594 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
+-rw-r--r-- root/root 3727 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 169 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
+-rw-r--r-- root/root 7621 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
+-rw-r--r-- root/root 60321 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
+-rw-r--r-- root/root 1653 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/esApply.R
+-rw-r--r-- root/root 3048 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
+-rw-r--r-- root/root 18067 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
+-rw-r--r-- root/root 110287 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
+-rw-r--r-- root/root 4080 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
+-rw-r--r-- root/root 79073 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
+-rw-r--r-- root/root 162 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/legacy/
+-rw-r--r-- root/root 13630 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
+-rw-r--r-- root/root 197873 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
+-rw-r--r-- root/root 5030 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
+-rw-r--r-- root/root 76888 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
+-rw-r--r-- root/root 8632 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/
+-rw-r--r-- root/root 8167 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+-rw-r--r-- root/root 10497 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
+-rw-r--r-- root/root 580 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 1515 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 5015 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 2096 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+-rw-r--r-- root/root 2522 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+-rwxr-xr-x root/root 213 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rw-r--r-- root/root 951 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 1907 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 62219 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 25005 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
+-rw-r--r-- root/root 802 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 1235 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 1166 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 105 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 1016 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 524 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 167662 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 231 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 113 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 795 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 5537 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 146 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 143 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 76485 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 95238 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 112 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
+-rw-r--r-- root/root 92336 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 183 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 62201 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 4704 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 939 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 741 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+-rw-r--r-- root/root 4678 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 943 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 4588 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 609 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+-rw-r--r-- root/root 555 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 105 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 1014 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 227 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 113 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+-rw-r--r-- root/root 795 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 4822 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 146 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+-rw-r--r-- root/root 143 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 998 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+-rw-r--r-- root/root 110 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 183 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 4705 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
+-rw-r--r-- root/root 705 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+-rw-r--r-- root/root 6194 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 423 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+-rw-r--r-- root/root 8317 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 403 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+-rw-r--r-- root/root 4598 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 6194 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 286 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 1257 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 2040 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 477 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 180 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2035 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 629 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rwxr-xr-x root/root 39 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 20153 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 1259 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 18428 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 857 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 241680 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 1996 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 14396 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 3320 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 40 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.rda
+-rw-r--r-- root/root 40 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/sample.eSet.rda
+-rw-r--r-- root/root 225 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/geneCov.rda
+-rw-r--r-- root/root 609 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/aaMap.rda
+-rw-r--r-- root/root 2032 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 25217 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 345999 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 40 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.rda
+-rw-r--r-- root/root 61627 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/geneData.rda
+-rw-r--r-- root/root 277973 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 435 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 28463 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/data/seD.rda
+-rw-r--r-- root/root 6600 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/INDEX
+-rw-r--r-- root/root 3988 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/NEWS
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+-rw-r--r-- root/root 212 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 1179 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 51239 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/html/00Index.html
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/R/
+-rw-r--r-- root/root 362005 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
+-rw-r--r-- root/root 384 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/R/Biobase
+-rw-r--r-- root/root 8695 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
+-rw-r--r-- root/root 650 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/CITATION
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 5365 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 774 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 2008 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 1213 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 1122 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 6808 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 516 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Code/
+-rw-r--r-- root/root 201 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 350 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 487 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-05-15 13:21 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/share/
+drwxr-xr-x root/root 0 2011-05-15 13:21 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-05-15 13:22 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1380 2011-04-15 04:11 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 158 2011-05-15 13:21 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 10569 2011-05-15 13:21 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 392 2011-05-15 13:21 ./usr/share/doc/r-bioc-biobase/README.Debian
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-i386-sbuild-c0f135b2-8214-4c54-98d9-1cc0726c3f84/build/buildd-r-bioc-biobase_2.12.1-1-i386-ZMzC8Y
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: i386
+Build-Space: 9984
+Build-Time: 22
+Distribution: sid
+Install-Time: 116
+Job: r-bioc-biobase_2.12.1-1
+Package: r-bioc-biobase
+Package-Time: 166
+Source-Version: 2.12.1-1
+Space: 9984
+Status: successful
+Version: 2.12.1-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1322
+Build needed 00:02:46, 9984k disc space
+Signature with key '44C3EAC7' requested:
diff --git a/amd64.log b/ia64.log
similarity index 50%
copy from amd64.log
copy to ia64.log
index 1d8080a..98c691c 100644
--- a/amd64.log
+++ b/ia64.log
@@ -1,200 +1,233 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on aqwa.igloo
+From buildd at caballero.debian.org Sun May 15 13:19:22 2011
+Return-path: <buildd at caballero.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
+ id 1QLbEA-0004Nd-DD
+ for logs at buildd.debian.org; Sun, 15 May 2011 13:19:22 +0000
+Received: from caballero.debian.org ([193.201.200.200])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=caballero.debian.org,
+ EMAIL=hostmaster at caballero.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at caballero.debian.org>)
+ id 1QLbEB-0005de-Rm; Sun, 15 May 2011 13:19:24 +0000
+Received: from buildd by caballero.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at caballero.debian.org>) id 1QLbE8-000574-Bn
+ for buildd-porters at caballero.debian.org; Sun, 15 May 2011 13:19:20 +0000
+From: buildd on caballero <buildd at caballero.debian.org>
+To: buildd-porters at caballero.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on ia64 (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QLbE8-000574-Bn at caballero.debian.org>
+Date: Sun, 15 May 2011 13:19:20 +0000
+Delivered-To: buildd-porters at caballero.debian.org
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on caballero.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.1-1 (amd64) 14 mai 2011 22:52 ║
+║ r-bioc-biobase 2.12.1-1 (ia64) 15 May 2011 13:16 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
Version: 2.12.1-1
Source Version: 2.12.1-1
-Distribution: unstable
-Architecture: amd64
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-Pv5C1p' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-b4fe8806-f9a3-4be9-b079-01db89bc8a53' with '«CHROOT»'
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Hit ftp://ftp.jaist.ac.jp sid InRelease
-Hit ftp://ftp.jaist.ac.jp sid/main Sources/DiffIndex
-Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
-Hit ftp://ftp.jaist.ac.jp sid/main TranslationIndex
-Hit ftp://ftp.jaist.ac.jp sid/main Translation-fr
-Reading package lists...
+Architecture: ia64
+Hit http://mirror.positive-internet.com sid InRelease
+Hit http://mirror.positive-internet.com sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://mirror.positive-internet.com sid/contrib Sources/DiffIndex
+Hit http://mirror.positive-internet.com sid/main ia64 Packages/DiffIndex
+Hit http://mirror.positive-internet.com sid/contrib ia64 Packages/DiffIndex
+Ign http://mirror.positive-internet.com sid/contrib TranslationIndex
+Hit http://mirror.positive-internet.com sid/main TranslationIndex
+Hit http://incoming.debian.org Release.gpg
+Ign http://mirror.positive-internet.com sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main ia64 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib ia64 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
-Local sources
-─────────────
+Check APT
+─────────
-r-bioc-biobase_2.12.1-1.dsc exists in .; copying to chroot
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 2s (824 kB/s)
+Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-dJHRTB/apt_archive/sbuild-build-depends-core-dummy.deb'.
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/702 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 12450 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
-dpkg-deb: building package `sbuild-build-depends-r-bioc-biobase-dummy' in `/«BUILDDIR»/resolver-3lDxGo/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'.
-OK
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-biobase build dependencies (apt-based resolver) │
+│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6.1-dev: already installed (2.13-2)
+gcc: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.4 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ gfortran-doc gfortran-4.4-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ gettext-base gfortran gfortran-4.4 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev sbuild-build-depends-r-bioc-biobase-dummy tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 33.1 MB/53.2 MB of archives.
-After this operation, 131 MB of additional disk space will be used.
-Get:1 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main groff-base amd64 1.21-5 [1157 kB]
-Get:2 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpipeline1 amd64 1.2.0-1 [38.3 kB]
-Get:3 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main man-db amd64 2.6.0.2-1 [1025 kB]
-Get:4 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libmagic1 amd64 5.04-5+b1 [233 kB]
-Get:5 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main file amd64 5.04-5+b1 [49.8 kB]
-Get:6 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxml2 amd64 2.7.8.dfsg-2+b1 [885 kB]
-Get:7 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:8 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB]
-Get:9 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB]
-Get:10 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main debhelper all 8.1.6 [557 kB]
-Get:11 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main cdbs all 0.4.93 [75.5 kB]
-Get:12 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main fontconfig-config all 2.8.0-2.2 [218 kB]
-Get:13 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libfontconfig1 amd64 2.8.0-2.2 [284 kB]
-Get:14 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main fontconfig amd64 2.8.0-2.2 [335 kB]
-Get:15 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libgfortran3 amd64 4.6.0-7 [358 kB]
-Get:16 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gfortran-4.6 amd64 4.6.0-7 [5551 kB]
-Get:17 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gfortran amd64 4:4.6.0-5 [1128 B]
-Get:18 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpixman-1-0 amd64 0.21.8-1 [364 kB]
-Get:19 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpng12-0 amd64 1.2.44-2 [182 kB]
-Get:20 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libx11-data all 2:1.4.3-1 [186 kB]
-Get:21 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libx11-6 amd64 2:1.4.3-1 [890 kB]
-Get:22 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libcairo2 amd64 1.10.2-6 [956 kB]
-Get:23 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libdatrie1 amd64 0.2.4-2 [27.4 kB]
-Get:24 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main x11-common all 1:7.6+6 [280 kB]
-Get:25 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libncurses5-dev amd64 5.9-1 [507 kB]
-Get:26 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libthai-data all 0.1.15-1 [201 kB]
-Get:27 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libthai0 amd64 0.1.15-1 [42.2 kB]
-Get:28 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpango1.0-0 amd64 1.28.3-6 [441 kB]
-Get:29 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpng12-dev amd64 1.2.44-2 [273 kB]
-Get:30 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libreadline6-dev amd64 6.2-1 [264 kB]
-Get:31 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libreadline-dev amd64 6.2-1 [878 B]
-Get:32 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libtiff4 amd64 3.9.5-1 [200 kB]
-Get:33 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxext6 amd64 2:1.3.0-1 [52.3 kB]
-Get:34 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxt6 amd64 1:1.1.1-1 [205 kB]
-Get:35 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main r-base-core amd64 2.13.0-1 [15.1 MB]
-Get:36 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main r-base-dev all 2.13.0-1 [3488 B]
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 33.1 MB in 1min 12s (455 kB/s)
+0 upgraded, 76 newly installed, 0 to remove and 9 not upgraded.
+Need to get 0 B/64.5 MB of archives.
+After this operation, 188 MB of additional disk space will be used.
Selecting previously deselected package bsdmainutils.
-(Reading database ... 12450 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+(Reading database ... 10485 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_ia64.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_ia64.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_amd64.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_ia64.deb) ...
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-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-1_ia64.deb) ...
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-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
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Selecting previously deselected package file.
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-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_ia64.deb) ...
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-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_ia64.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
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Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_ia64.deb) ...
Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ...
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+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_ia64.deb) ...
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-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-3_ia64.deb) ...
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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
@@ -206,117 +239,117 @@ Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
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-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_ia64.deb) ...
Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_ia64.deb) ...
+Selecting previously deselected package libquadmath0.
+Unpacking libquadmath0 (from .../libquadmath0_4.6.0-7_ia64.deb) ...
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+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_ia64.deb) ...
+Selecting previously deselected package gfortran-4.4.
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-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_ia64.deb) ...
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-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_ia64.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.15-1_ia64.deb) ...
Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
+Unpacking libxft2 (from .../libxft2_2.2.0-2_ia64.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_ia64.deb) ...
Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24_amd64.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24_ia64.deb) ...
Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_ia64.deb) ...
Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_ia64.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_ia64.deb) ...
Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_ia64.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_ia64.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_ia64.deb) ...
Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_ia64.deb) ...
Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_ia64.deb) ...
Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_amd64.deb) ...
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_ia64.deb) ...
Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_ia64.deb) ...
Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_ia64.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_amd64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-3_ia64.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-4_ia64.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_ia64.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_ia64.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_ia64.deb) ...
Selecting previously deselected package r-base-dev.
Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-biobase-dummy.
-Unpacking sbuild-build-depends-r-bioc-biobase-dummy (from .../sbuild-build-depends-r-bioc-biobase-dummy.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
@@ -349,9 +382,10 @@ Setting up libfontconfig1 (2.8.0-2.2) ...
Setting up fontconfig (2.8.0-2.2) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
+Setting up libquadmath0 (4.6.0-7) ...
Setting up libgfortran3 (4.6.0-7) ...
-Setting up gfortran-4.6 (4.6.0-7) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.4 (4.4.6-3) ...
+Setting up gfortran (4:4.4.5-9) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
@@ -376,10 +410,9 @@ invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-1) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up liblapack3gf (3.2.1-8) ...
+update-alternatives: warning: forcing reinstallation of alternative /usr/lib/lapack/liblapack.so.3gf because link group liblapack.so.3gf is broken.
+Setting up liblapack-dev (3.2.1-8) ...
Setting up libncurses5-dev (5.9-1) ...
Setting up libthai-data (0.1.15-1) ...
Setting up libthai0 (0.1.15-1) ...
@@ -412,15 +445,15 @@ Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-1) ...
-Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-7 gcc-4.4_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.6_4.6.0-7 libc6-dev_2.13-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-5
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-3 cpp-4.5_4.5.3-1 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.5 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c2_0.10.2-9 libppl-c4_0.11.2-3 libppl7_0.10.2-9 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-7 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
+Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 gcc-4.4_4.4.6-3 libc6.1-dev_2.13-2 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 linux-libc-dev_2.6.38-5
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.4.5-9 cpp-4.4_4.4.6-3 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-9 g++-4.4_4.4.6-3 gcc_4:4.4.5-9 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.4.5-9 gfortran-4.4_4.4.6-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6.1_2.13-2 libc6.1-dev_2.13-2 libcairo2_1.10.2-6 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.2.1-8 liblapack3gf_3.2.1-8 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libquadmath0_4.6.0-7 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libunwind7_0.99-0.2 libunwind7-dev_0.99-0.2 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -430,8 +463,9 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 14 13:35:55 2011 UTC using RSA key ID 2295D502
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
@@ -441,11 +475,11 @@ dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
@@ -453,18 +487,25 @@ dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
dpkg-buildpackage: source version 2.12.1-1
-dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-bioc-biobase-2.12.1
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -480,32 +521,42 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-biobase-2.12.1
-dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
-dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-biobase using existing r-bioc-biobase_2.12.1.orig.tar.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.1-1.diff.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.1-1.dsc
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
- fakeroot debian/rules binary
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -515,26 +566,26 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-installing to /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -545,13 +596,13 @@ installing to /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.12.1-1-ia64-InSwSu/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
@@ -587,36 +638,25 @@ dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-biobase_2.12.1-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_ia64.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-biobase-2.12.1
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110514-2255
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-biobase_2.12.1-1_amd64.changes:
-──────────────────────────────────────
+Build finished at 20110515-1318
+r-bioc-biobase_2.12.1-1_ia64.changes:
Format: 1.8
Date: Sat, 14 May 2011 22:35:11 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
-Architecture: source amd64
+Architecture: ia64
Version: 2.12.1-1
-Distribution: unstable
+Distribution: sid
Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: ia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
@@ -626,39 +666,30 @@ Changes:
.
* Initial release (Closes: #169859)
Checksums-Sha1:
- aedfeccaf756cd7b517bac5ccb17f9776e937bfa 1058 r-bioc-biobase_2.12.1-1.dsc
- 3a9ae10356cee7c57acc36a410e480bbcff5523a 2222976 r-bioc-biobase_2.12.1.orig.tar.gz
- f027d203820d485d6edab7740e0f2b3404bad3e2 5336 r-bioc-biobase_2.12.1-1.diff.gz
- 2bcc524ff3a4c74c9a3af4029035f9c5d0428ec2 2672936 r-bioc-biobase_2.12.1-1_amd64.deb
+ 10a5694804b3cab8c063f40d37a057facdb016ad 2674052 r-bioc-biobase_2.12.1-1_ia64.deb
Checksums-Sha256:
- 829f433a8639d40fd1967741c6b8465480d75e1a20285d56ca1e206f7f7f9513 1058 r-bioc-biobase_2.12.1-1.dsc
- 8d16adb779c63228fee029a1d410b8906cae6dd9876a40958f13f469aaf9e608 2222976 r-bioc-biobase_2.12.1.orig.tar.gz
- b50070598aa0c88ab55fd8e423c5955575fadcf48c30a1275c774240cb353cdd 5336 r-bioc-biobase_2.12.1-1.diff.gz
- f52f09d82ce272b5a6c1216813cc328ef264f759ac22b9630cf8368df8e0d927 2672936 r-bioc-biobase_2.12.1-1_amd64.deb
+ f42e06719de12666314ada6084666d5c0e5aa716f9c4689aaf891dbb8208475d 2674052 r-bioc-biobase_2.12.1-1_ia64.deb
Files:
- 1c9c80465edcc7e4cd20e0e8eb6479e5 1058 gnu-r optional r-bioc-biobase_2.12.1-1.dsc
- 893dc8abd60e3cebae58a000ffb15288 2222976 gnu-r optional r-bioc-biobase_2.12.1.orig.tar.gz
- 8ce50984d1b64d94ecbec9646ff5821b 5336 gnu-r optional r-bioc-biobase_2.12.1-1.diff.gz
- d5fe23272e247c9bd3debf0caf6e08e1 2672936 gnu-r optional r-bioc-biobase_2.12.1-1_amd64.deb
+ e9a8effc17ce677be2ac3be74114abba 2674052 gnu-r optional r-bioc-biobase_2.12.1-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.1-1_amd64.deb
-─────────────────────────────────
+r-bioc-biobase_2.12.1-1_ia64.deb
+────────────────────────────────
new debian package, version 2.0.
- size 2672936 bytes: control archive= 4890 bytes.
- 1187 bytes, 25 lines control
+ size 2674052 bytes: control archive= 4891 bytes.
+ 1188 bytes, 25 lines control
13326 bytes, 141 lines md5sums
Package: r-bioc-biobase
Version: 2.12.1-1
- Architecture: amd64
+ Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3740
- Depends: libc6 (>= 2.3), r-base-core (>= 2.13.0~)
+ Installed-Size: 3752
+ Depends: libc6.1 (>= 2.3), r-base-core (>= 2.13.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -679,221 +710,215 @@ r-bioc-biobase_2.12.1-1_amd64.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/
-drwxr-xr-x root/root 0 2011-05-14 22:54 ./usr/lib/
-drwxr-xr-x root/root 0 2011-05-14 22:54 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/R/
--rw-r--r-- root/root 91 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
--rw-r--r-- root/root 201 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/
--rw-r--r-- root/root 487 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
--rw-r--r-- root/root 350 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
--rw-r--r-- root/root 3988 2011-05-14 22:54 ./usr/lib/R/site-library/Biobase/NEWS
--rw-r--r-- root/root 516 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/testClass.R
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 774 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 2008 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
--rw-r--r-- root/root 1213 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 5365 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 6808 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 1122 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/
--rw-r--r-- root/root 109039 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
--rw-r--r-- root/root 715 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 361987 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8695 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/
--rw-r--r-- root/root 212 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
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┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
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+Built successfully
+────────────────────────────────────────────────────────────────────────────────
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+│ Post Build │
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Reading package lists...
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Building dependency tree...
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-The following packages were automatically installed and are no longer required:
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bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
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-(Reading database ... 16396 files and directories currently installed.)
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+ libpng12-0* libpng12-dev* libquadmath0* libreadline-dev* libreadline6-dev*
+ libsm6* libthai-data* libthai0* libtiff4* libunistring0* libx11-6*
+ libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
+ libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
+ po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf*
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│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 12168
-Build-Time: 23
-Distribution: unstable
-Install-Time: 111
-Job: r-bioc-biobase_2.12.1-1.dsc
+Architecture: ia64
+Build-Space: 9992
+Build-Time: 49
+Distribution: sid
+Install-Time: 57
+Job: r-bioc-biobase_2.12.1-1
Package: r-bioc-biobase
-Package-Time: 138
+Package-Time: 119
Source-Version: 2.12.1-1
-Space: 12168
+Space: 9992
Status: successful
Version: 2.12.1-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110514-2255
-Build needed 00:02:18, 12168k disc space
+Finished at 20110515-1318
+Build needed 00:01:59, 9992k disc space
+
diff --git a/info b/info
new file mode 100644
index 0000000..77a15f5
--- /dev/null
+++ b/info
@@ -0,0 +1,11 @@
+ia64~1305465563~sid~successful
+i386~1305465729~sid~successful
+powerpc~1305465816~sid~successful
+s390~1305467907~sid~successful
+mipsel~1305468760~sid~successful
+hurd-i386~1305469992~sid~successful
+kfreebsd-amd64~1305470045~sid~successful
+kfreebsd-i386~1305470718~sid~successful
+mips~1305470810~sid~successful
+sparc~1305481782~sid~successful
+armel~1305493118~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
new file mode 100644
index 0000000..58c36de
--- /dev/null
+++ b/kfreebsd-amd64.log
@@ -0,0 +1,1039 @@
+From buildd at fano.debian.org Sun May 15 14:34:05 2011
+Return-path: <buildd at fano.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1QLcOS-0007XJ-QA
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:34:04 +0000
+Received: from fano.debian.org ([206.12.19.110])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at fano.debian.org>)
+ id 1QLcOU-0008DU-Om; Sun, 15 May 2011 14:34:07 +0000
+Received: from buildd by fano.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fano.debian.org>)
+ id 1QLcOP-000KP8-Lx; Sun, 15 May 2011 14:34:01 +0000
+Message-Id: <E1QLcOP-000KP8-Lx at fano.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Sun, 15 May 2011 14:34:01 +0000
+From: buildd on fano <buildd at fano.debian.org>
+To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on kfreebsd-amd64
+ (dist=sid)
+Key-Id: 91116966
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (kfreebsd-amd64) 15 May 2011 14:31 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Source Version: 2.12.1-1
+Architecture: kfreebsd-amd64
+Hit http://mirror-ubc.debian.org sid InRelease
+Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
+Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
+Hit http://mirror-ubc.debian.org sid/main TranslationIndex
+Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages
+Ign http://mirror-ubc.debian.org sid/contrib Translation-en
+Ign http://mirror-ubc.debian.org sid/non-free Translation-en
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
+Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
+Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://incoming.debian.org sid/non-free TranslationIndex
+Hit http://incoming.debian.org Release
+Ign http://incoming.debian.org sid/main 2011-05-15-1413.49.pdiff
+Ign http://incoming.debian.org sid/contrib 2011-05-15-1413.49.pdiff
+Ign http://incoming.debian.org sid/non-free 2011-05-15-1413.49.pdiff
+Ign http://incoming.debian.org sid/main kfreebsd-amd64 2011-05-15-1413.49.pdiff
+Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
+Hit http://incoming.debian.org sid/main
+Hit http://incoming.debian.org sid/contrib
+Hit http://incoming.debian.org sid/non-free
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Hit http://incoming.debian.org sid/main kfreebsd-amd64
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org sid/non-free Translation-en
+Ign http://incoming.debian.org Translation-en
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 3s (643 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.5)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1)
+freebsd-utils: already installed (8.1-4+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 72 newly installed, 0 to remove and 4 not upgraded.
+Need to get 0 B/52.5 MB of archives.
+After this operation, 125 MB of additional disk space will be used.
+Selecting previously deselected package groff-base.
+(Reading database ... 12278 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-5_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_kfreebsd-amd64.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_kfreebsd-amd64.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.1-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.1-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../zip_3.0-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.1-3) ...
+Setting up libreadline-dev (6.1-3) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Checking correctness of dependencies...
+Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
+Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 kfreebsd-kernel-headers_0.53 libc0.1-dev_2.13-4 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.5 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 freebsd-utils_8.1-4+b1 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.1_2.13-4 libc0.1-dev_2.13-4 libcairo2_1.10.2-6 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-7 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libkiconv4_8.1-5 libkvm0_8.1-5 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline-dev_6.1-3 libreadline6_6.1-3 libreadline6-dev_6.1-3 libsasl2-2_2.1.23.dfsg1-8 libsbuf0_8.1-5 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011g-1 ucf_3.0025+nmu2 ufsutils_7.3-1+b1 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture kfreebsd-amd64
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1'
+
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_kfreebsd-amd64.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1433
+
+r-bioc-biobase_2.12.1-1_kfreebsd-amd64.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: kfreebsd-amd64
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ 805370c1c494faecd500882a72b945b2c62f76b1 2673186 r-bioc-biobase_2.12.1-1_kfreebsd-amd64.deb
+Checksums-Sha256:
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+Files:
+ e8adc3970a6b2a708ed1f362dbcd7f2a 2673186 gnu-r optional r-bioc-biobase_2.12.1-1_kfreebsd-amd64.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_kfreebsd-amd64.deb
+──────────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2673186 bytes: control archive= 4903 bytes.
+ 1198 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: kfreebsd-amd64
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3536
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
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+-rw-r--r-- root/root 1653 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/doc/esApply.R
+-rw-r--r-- root/root 1426 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/doc/index.html
+drwxr-xr-x root/root 0 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 109039 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+-rw-r--r-- root/root 715 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+drwxr-xr-x root/root 0 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 774 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 5365 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 1213 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 1122 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 2008 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 6808 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 650 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/CITATION
+-rw-r--r-- root/root 516 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 849 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 242486 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 1992 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 14396 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 3320 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+drwxr-xr-x root/root 0 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 51239 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/html/00Index.html
+-rw-r--r-- root/root 1179 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 6600 2011-05-15 14:33 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-05-15 14:33 ./usr/share/
+drwxr-xr-x root/root 0 2011-05-15 14:33 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-05-15 14:33 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 392 2011-05-15 14:32 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10569 2011-05-15 14:32 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 1380 2011-04-15 04:11 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 158 2011-05-15 14:32 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1305469869-75863/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-amd64-Dmfpeg
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
+ gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
+ libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
+ libice6* libjpeg62* libjpeg62-dev* liblapack-dev* liblapack3gf* libmagic1*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3*
+ libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
+ libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
+ libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
+ libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
+ libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 72 to remove and 4 not upgraded.
+After this operation, 125 MB disk space will be freed.
+(Reading database ... 16090 files and directories currently installed.)
+Removing cdbs ...
+Removing debhelper ...
+Removing r-base-dev ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing file ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libfontconfig1 ...
+Purging configuration files for libfontconfig1 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
+Removing gfortran ...
+Removing gfortran-4.6 ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libbz2-dev ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing libfreetype6 ...
+Purging configuration files for libfreetype6 ...
+Removing libgfortran3 ...
+Purging configuration files for libgfortran3 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libjpeg62-dev ...
+Removing libjpeg62 ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
+Removing libncurses5-dev ...
+Removing libpaper-utils ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libpcre3-dev ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libpcre3 ...
+Purging configuration files for libpcre3 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libpng12-dev ...
+Removing libthai-data ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ttf-dejavu-core ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: kfreebsd-amd64
+Build-Space: 9384
+Build-Time: 28
+Distribution: sid
+Install-Time: 92
+Job: r-bioc-biobase_2.12.1-1
+Package: r-bioc-biobase
+Package-Time: 134
+Source-Version: 2.12.1-1
+Space: 9384
+Status: successful
+Version: 2.12.1-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1433
+Build needed 00:02:14, 9384k disc space
+Signature with key '91116966' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
new file mode 100644
index 0000000..108f01b
--- /dev/null
+++ b/kfreebsd-i386.log
@@ -0,0 +1,1028 @@
+From buildd at field.debian.org Sun May 15 14:45:18 2011
+Return-path: <buildd at field.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at field.debian.org>)
+ id 1QLcZK-0000eL-2u
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:45:18 +0000
+Received: from field.debian.org ([194.177.211.210])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=field.debian.org, EMAIL=hostmaster at field.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at field.debian.org>)
+ id 1QLcZJ-0001lN-08; Sun, 15 May 2011 14:45:17 +0000
+Received: from buildd by field.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at field.debian.org>)
+ id 1QLcZH-000LDE-NV; Sun, 15 May 2011 14:45:15 +0000
+Message-Id: <E1QLcZH-000LDE-NV at field.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Sun, 15 May 2011 14:45:15 +0000
+From: buildd on field <buildd at field.debian.org>
+To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on kfreebsd-i386
+ (dist=sid)
+Key-Id: 22C61858
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on field.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (kfreebsd-i386) 15 May 2011 14:39 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Source Version: 2.12.1-1
+Architecture: kfreebsd-i386
+Hit http://ftp.gr.debian.org sid InRelease
+Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
+Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.gr.debian.org sid/main TranslationIndex
+Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
+Hit http://incoming.debian.org Release.gpg
+Ign http://ftp.gr.debian.org sid/contrib Translation-en
+Ign http://ftp.gr.debian.org sid/non-free Translation-en
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
+Hit http://incoming.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://incoming.debian.org sid/non-free TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org sid/non-free Translation-en
+Ign http://incoming.debian.org Translation-en
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/debian/ sid/main r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/debian/ sid/main r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/debian/ sid/main r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 4s (522 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.5)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1)
+freebsd-utils: already installed (8.1-4)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ devscripts dh-make curl defoma gettext-doc gfortran-doc gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 72 newly installed, 0 to remove and 4 not upgraded.
+Need to get 0 B/47.9 MB of archives.
+After this operation, 112 MB of additional disk space will be used.
+Selecting previously deselected package groff-base.
+(Reading database ... 12221 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-5_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-i386.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_kfreebsd-i386.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_kfreebsd-i386.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-i386.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_kfreebsd-i386.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_kfreebsd-i386.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_kfreebsd-i386.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_kfreebsd-i386.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-i386.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-i386.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_kfreebsd-i386.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-i386.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-i386.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.1-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.1-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../zip_3.0-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_kfreebsd-i386.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.1-3) ...
+Setting up libreadline-dev (6.1-3) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Checking correctness of dependencies...
+Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
+Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 kfreebsd-kernel-headers_0.53 libc0.1-dev_2.13-4 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.5 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 freebsd-utils_8.1-4 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.1_2.13-4 libc0.1-dev_2.13-4 libcairo2_1.10.2-6 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-7 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libkiconv4_8.1-5 libkvm0_8.1-5 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline-dev_6.1-3 libreadline6_6.1-3 libreadline6-dev_6.1-3 libsasl2-2_2.1.23.dfsg1-8 libsbuf0_8.1-5 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011g-1 ucf_3.0025+nmu2 ufsutils_7.3-1+b1 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture kfreebsd-i386
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_kfreebsd-i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1443
+
+r-bioc-biobase_2.12.1-1_kfreebsd-i386.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: kfreebsd-i386
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: kfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ 4771eb8e60f27d51bf0dbd60a313191b3d988121 2672342 r-bioc-biobase_2.12.1-1_kfreebsd-i386.deb
+Checksums-Sha256:
+ f611e8b87c79507359c5a5e6d93b2ecbec7a54a50283ad139ede69344247b06d 2672342 r-bioc-biobase_2.12.1-1_kfreebsd-i386.deb
+Files:
+ 5b71d506ac84f50e812d0497a65b0ec7 2672342 gnu-r optional r-bioc-biobase_2.12.1-1_kfreebsd-i386.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_kfreebsd-i386.deb
+─────────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2672342 bytes: control archive= 4899 bytes.
+ 1197 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: kfreebsd-i386
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3532
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/
+-rw-r--r-- root/root 2870 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/NAMESPACE
+-rw-r--r-- root/root 3988 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/NEWS
+-rw-r--r-- root/root 1262 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 1019 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 5635 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+-rw-r--r-- root/root 5631 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 3432 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+-rw-r--r-- root/root 322 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 475 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 1357 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 18396 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/R/
+-rw-r--r-- root/root 384 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/R/Biobase
+-rw-r--r-- root/root 362011 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
+-rw-r--r-- root/root 8677 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 345999 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 609 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/aaMap.rda
+-rw-r--r-- root/root 225 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/geneCov.rda
+-rw-r--r-- root/root 435 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 61627 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/geneData.rda
+-rw-r--r-- root/root 2032 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 277973 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 25217 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 40 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/sample.eSet.rda
+-rw-r--r-- root/root 40 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.rda
+-rw-r--r-- root/root 40 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.rda
+-rw-r--r-- root/root 28463 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/data/seD.rda
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Code/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 487 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 350 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 201 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 212 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 939 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 4678 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 741 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+-rw-r--r-- root/root 4588 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 943 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 1014 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 4822 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 795 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 555 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 113 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+-rw-r--r-- root/root 609 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+-rw-r--r-- root/root 143 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 183 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 105 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 110 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 227 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 146 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+-rw-r--r-- root/root 4705 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+-rw-r--r-- root/root 998 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 1016 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 5537 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 795 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 1166 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 802 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 524 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 113 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 1235 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 143 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
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+drwxr-xr-x root/root 0 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/html/
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+-rw-r--r-- root/root 6600 2011-05-15 14:43 ./usr/lib/R/site-library/Biobase/INDEX
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+-rw-r--r-- root/root 392 2011-05-15 14:43 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10569 2011-05-15 14:43 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 1380 2011-04-15 04:11 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 158 2011-05-15 14:43 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1305470378-77904/build/buildd-r-bioc-biobase_2.12.1-1-kfreebsd-i386-4YbQf3
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
+ gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
+ libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
+ libice6* libjpeg62* libjpeg62-dev* liblapack-dev* liblapack3gf* libmagic1*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3*
+ libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
+ libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
+ libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
+ libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
+ libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 72 to remove and 4 not upgraded.
+After this operation, 112 MB disk space will be freed.
+(Reading database ... 16033 files and directories currently installed.)
+Removing cdbs ...
+Removing debhelper ...
+Removing r-base-dev ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing file ...
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+Purging configuration files for r-base-core ...
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+Purging configuration files for libpango1.0-0 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
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+Purging configuration files for libxft2 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libfontconfig1 ...
+Purging configuration files for libfontconfig1 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
+Removing gfortran ...
+Removing gfortran-4.6 ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libbz2-dev ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing libfreetype6 ...
+Purging configuration files for libfreetype6 ...
+Removing libgfortran3 ...
+Purging configuration files for libgfortran3 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libjpeg62-dev ...
+Removing libjpeg62 ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
+Removing libncurses5-dev ...
+Removing libpaper-utils ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libpcre3-dev ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libpcre3 ...
+Purging configuration files for libpcre3 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libpng12-dev ...
+Removing libthai-data ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ttf-dejavu-core ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: kfreebsd-i386
+Build-Space: 9380
+Build-Time: 30
+Distribution: sid
+Install-Time: 187
+Job: r-bioc-biobase_2.12.1-1
+Package: r-bioc-biobase
+Package-Time: 239
+Source-Version: 2.12.1-1
+Space: 9380
+Status: successful
+Version: 2.12.1-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1443
+Build needed 00:03:59, 9380k disc space
+Signature with key '22C61858' requested:
diff --git a/mips.log b/mips.log
new file mode 100644
index 0000000..041c25d
--- /dev/null
+++ b/mips.log
@@ -0,0 +1,1968 @@
+From buildd at lucatelli.debian.org Sun May 15 14:46:50 2011
+Return-path: <buildd at lucatelli.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at lucatelli.debian.org>)
+ id 1QLcao-0000os-2T
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:46:50 +0000
+Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=lucatelli.debian.org,
+ EMAIL=hostmaster at lucatelli.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at lucatelli.debian.org>)
+ id 1QLcam-0001oc-CL
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:46:49 +0000
+Received: from buildd by lucatelli.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at lucatelli.debian.org>) id 1QLcad-0005wh-Gm
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:46:39 +0000
+From: buildd on lucatelli <buildd at lucatelli.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on mips (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QLcad-0005wh-Gm at lucatelli.debian.org>
+Date: Sun, 15 May 2011 14:46:39 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (mips) 15 May 2011 14:35 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Source Version: 2.12.1-1
+Architecture: mips
+Get:1 http://mirror-ubc.debian.org unstable InRelease [167 kB]
+Get:2 http://incoming.debian.org unstable InRelease [167 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [5215 kB]
+Ign http://incoming.debian.org InRelease
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+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [50.1 kB]
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+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [7089 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [54.6 kB]
+Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
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+Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
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+Ign http://incoming.debian.org unstable/contrib TranslationIndex
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+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 25.7 MB in 1min 26s (299 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/debian/ unstable/main r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/debian/ unstable/main r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/debian/ unstable/main r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 1s (1451 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.2)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-2)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 75 newly installed, 0 to remove and 27 not upgraded.
+Need to get 67.5 MB of archives.
+After this operation, 129 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 mips 4.6.0-7 [26.1 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.0-7 [130 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 mips 4.6.0-7 [308 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.0-7 [3732 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.0-7 [1723 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 mips 4.6.0-7 [6271 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.0-7 [4040 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.0-7 [69.5 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.2 [210 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-5 [1203 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-1 [35.7 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-1 [1005 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.04-5+b1 [239 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.04-5+b1 [49.9 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-3 [262 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-2+b1 [837 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.6-1 [1509 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-4 [415 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-3 [2037 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.93 [75.5 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7 [135 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.4-1 [399 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-2.2 [283 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-2.2 [332 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.0-7 [231 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.0-7 [4362 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.0-5 [1132 B]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2-8 [210 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2-8 [257 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-6 [37.9 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.21.8-1 [347 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.44-2 [176 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-1 [16.4 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-1 [22.0 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-2 [37.3 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.3-1 [858 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-2 [14.3 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-2 [9192 B]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-1 [30.5 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6 [959 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-2 [26.2 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-1 [49.9 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62 mips 6b1-1 [94.5 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62-dev mips 6b1-1 [207 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.0-4 [4548 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.0-4 [5191 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-1 [509 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-1 [41.5 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-2 [56.5 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.28.3-6 [420 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24 [21.3 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24 [18.1 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-3 [113 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-3 [316 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.44-2 [279 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-1 [270 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-1 [882 B]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-1 [27.9 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-1 [191 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-1 [48.0 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-1 [16.4 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-1 [188 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-3 [354 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-4 [202 kB]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.9-2 [1595 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.9-2 [1182 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.13.0-1 [14.6 MB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.13.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 67.5 MB in 11s (5722 kB/s)
+(Reading database ... 11390 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-7_mips.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-7_mips.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-7) ...
+(Reading database ... 11390 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-7_mips.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-7) ...
+(Reading database ... 11390 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-7_mips.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-7_mips.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-7_mips.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-7_mips.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-7_mips.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-7) ...
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 11390 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mips.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_mips.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_mips.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_mips.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mips.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_mips.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mips.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_mips.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_mips.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mips.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mips.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mips.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_mips.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mips.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mips.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mips.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mips.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_mips.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_mips.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mips.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_mips.deb) ...
+Selecting previously deselected package libblas-dev.
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+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mips.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_mips.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mips.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mips.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mips.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mips.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mips.deb) ...
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+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mips.deb) ...
+Selecting previously deselected package x11-common.
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+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mips.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mips.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mips.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mips.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mips.deb) ...
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+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mips.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_mips.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_mips.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mips.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24_mips.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_mips.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mips.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mips.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mips.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_mips.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_mips.deb) ...
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+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mips.deb) ...
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+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mips.deb) ...
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+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mips.deb) ...
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+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mips.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mips.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_mips.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-4_mips.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mips.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mips.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_mips.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Setting up libgomp1 (4.6.0-7) ...
+Setting up cpp-4.6 (4.6.0-7) ...
+Setting up gcc-4.6 (4.6.0-7) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-1) ...
+Setting up libreadline-dev (6.2-1) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.0-7) ...
+Setting up g++-4.6 (4.6.0-7) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
+Toolchain package versions: binutils_2.21.51.20110421-3 dpkg-dev_1.16.0.2 g++-4.4_4.4.6-2 g++-4.6_4.6.0-7 gcc-4.4_4.4.6-2 gcc-4.6_4.6.0-7 libc6-dev_2.13-2 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-4
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-2 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-2 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4_4.4.6-2 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-18 libdb4.8_4.8.30-7 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture mips
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_mips.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1446
+
+r-bioc-biobase_2.12.1-1_mips.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: mips
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ bbf3851bcb4350798706028bebc15f0bdfe7aead 2673688 r-bioc-biobase_2.12.1-1_mips.deb
+Checksums-Sha256:
+ 6a032f89ddf74956d6a1d9be1b629c108e2c15324ac3f55ef429d2c71f674585 2673688 r-bioc-biobase_2.12.1-1_mips.deb
+Files:
+ 58ee7e536a061d94dbfb684c362a3240 2673688 gnu-r optional r-bioc-biobase_2.12.1-1_mips.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_mips.deb
+────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2673688 bytes: control archive= 4900 bytes.
+ 1186 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: mips
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3744
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./usr/
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/
+-rw-r--r-- root/root 2870 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/NAMESPACE
+-rw-r--r-- root/root 650 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/CITATION
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+-rw-r--r-- root/root 212 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/R/
+-rw-r--r-- root/root 362002 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
+-rw-r--r-- root/root 384 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/R/Biobase
+-rw-r--r-- root/root 8698 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 6808 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 5365 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 1213 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 2008 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 774 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 1122 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+drwxr-xr-x root/root 0 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 14396 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 241251 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 1986 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 3320 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+-rw-r--r-- root/root 853 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/help/paths.rds
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 61627 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/geneData.rda
+-rw-r--r-- root/root 28463 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/seD.rda
+-rw-r--r-- root/root 2032 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 40 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/sample.eSet.rda
+-rw-r--r-- root/root 609 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/aaMap.rda
+-rw-r--r-- root/root 277973 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 435 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 25217 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 40 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.rda
+-rw-r--r-- root/root 225 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/geneCov.rda
+-rw-r--r-- root/root 40 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.rda
+-rw-r--r-- root/root 345999 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/data/SW.rda
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/
+-rwxr-xr-x root/root 39 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 4598 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 2040 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rwxr-xr-x root/root 213 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rw-r--r-- root/root 10497 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
+-rw-r--r-- root/root 951 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 5015 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 580 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 2035 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 6194 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 795 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 1016 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 231 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 25005 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
+-rw-r--r-- root/root 5537 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 146 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 802 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 4704 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+-rw-r--r-- root/root 183 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 112 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
+-rw-r--r-- root/root 76485 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 167662 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 95238 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 524 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 143 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 113 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 92336 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 1235 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 105 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 62201 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 62219 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 1166 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 795 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 1014 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
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+-rw-r--r-- root/root 105 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 555 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
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+-rw-r--r-- root/root 6194 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
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+-rw-r--r-- root/root 939 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
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+-rw-r--r-- root/root 4588 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 943 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
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+-rw-r--r-- root/root 8317 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 1907 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
+-rw-r--r-- root/root 180 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 477 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 629 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rw-r--r-- root/root 403 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+-rw-r--r-- root/root 2522 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+-rw-r--r-- root/root 286 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 1257 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 8167 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+-rw-r--r-- root/root 1515 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 20153 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 3988 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/NEWS
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+-rw-r--r-- root/root 1179 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 51239 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/html/00Index.html
+-rw-r--r-- root/root 516 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/testClass.R
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+-rw-r--r-- root/root 91 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
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+-rw-r--r-- root/root 350 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 487 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 1264 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/DESCRIPTION
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+-rw-r--r-- root/root 110287 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
+-rw-r--r-- root/root 4080 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
+-rw-r--r-- root/root 267594 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
+-rw-r--r-- root/root 28377 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
+-rw-r--r-- root/root 3048 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
+-rw-r--r-- root/root 162 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
+-rw-r--r-- root/root 60321 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
+-rw-r--r-- root/root 1426 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/doc/index.html
+-rw-r--r-- root/root 7621 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
+-rw-r--r-- root/root 8632 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
+-rw-r--r-- root/root 18067 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
+-rw-r--r-- root/root 169 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
+-rw-r--r-- root/root 76888 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
+drwxr-xr-x root/root 0 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/legacy/
+-rw-r--r-- root/root 13630 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
+-rw-r--r-- root/root 79073 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
+-rw-r--r-- root/root 1653 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/doc/esApply.R
+-rw-r--r-- root/root 197873 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
+-rw-r--r-- root/root 3727 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 3067 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 25868 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+-rw-r--r-- root/root 6600 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 322 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 3432 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+-rw-r--r-- root/root 475 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 1020 2011-05-15 14:42 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 1357 2011-05-15 14:45 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 5631 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 5635 2011-05-15 14:44 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./usr/share/
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-05-15 14:45 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 158 2011-05-15 14:41 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 10569 2011-05-15 14:41 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 1380 2011-04-15 04:11 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 392 2011-05-15 14:41 ./usr/share/doc/r-bioc-biobase/README.Debian
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mips-sbuild-ef74bb36-a804-4dc7-b033-d1831e321b4c/build/buildd-r-bioc-biobase_2.12.1-1-mips-OWeIc7
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mips
+Build-Space: 9984
+Build-Time: 314
+Distribution: sid
+Install-Time: 232
+Job: r-bioc-biobase_2.12.1-1
+Package: r-bioc-biobase
+Package-Time: 681
+Source-Version: 2.12.1-1
+Space: 9984
+Status: successful
+Version: 2.12.1-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1446
+Build needed 00:11:21, 9984k disc space
+Signature with key 'F4C69470' requested:
+
+From buildd at phrixos.ayous.org Sun May 15 14:12:39 2011
+Return-path: <buildd at phrixos.ayous.org>
+Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
+ helo=alius.ayous.org)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
+ id 1QLc3g-0004wU-Np
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:12:39 +0000
+Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at phrixos.ayous.org>)
+ id 1QLc3e-00082o-96; Sun, 15 May 2011 14:12:34 +0000
+Date: Sun, 15 May 2011 14:12:34 +0000
+Message-Id: <E1QLc3e-00082o-96 at phrixos.ayous.org>
+From: buildd on phrixos <buildd at phrixos.ayous.org>
+To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on mipsel
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (mipsel) 15 May 2011 14:04 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Architecture: mipsel
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-23c29605-54e1-4563-8f78-ef5f68337ad7/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP
+Start Time: 20110515-1404
+Get:1 http://incoming.debian.org unstable InRelease [167 kB]
+Ign http://incoming.debian.org InRelease
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:2 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:3 http://mirror.ayous.org unstable InRelease [167 kB]
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [6576 kB]
+Ign http://mirror.ayous.org unstable/contrib TranslationIndex
+Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2264 B]
+Get:7 http://mirror.ayous.org unstable/main Sources [6576 kB]
+Get:8 http://incoming.debian.org unstable/contrib Sources [59.0 kB]
+Get:9 http://incoming.debian.org unstable/non-free Sources [110 kB]
+Get:10 http://incoming.debian.org unstable/main mipsel Packages [9326 kB]
+Get:11 http://mirror.ayous.org unstable/contrib Sources [59.0 kB]
+Get:12 http://mirror.ayous.org unstable/non-free Sources [110 kB]
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+Get:14 http://incoming.debian.org unstable/contrib mipsel Packages [66.4 kB]
+Get:15 http://incoming.debian.org Release [1604 B]
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+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
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+Ign http://mirror.ayous.org unstable/contrib Translation-en
+Fetched 33.2 MB in 32s (1034 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 6s (370 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+** Using build dependencies supplied by package:
+Build-Depends: cdbs, debhelper (>= 8), r-base-dev
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Checking for already installed source dependencies...
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for source dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 75 newly installed, 0 to remove and 27 not upgraded.
+Need to get 67.3 MB of archives.
+After this operation, 129 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.0-7 [26.1 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.0-7 [130 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.0-7 [301 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.0-7 [3752 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.0-7 [1668 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.0-7 [6151 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.0-7 [4051 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.0-7 [68.4 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.2 [207 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-5 [1154 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-1 [35.1 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-1 [1008 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-3 [262 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-2+b1 [832 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.93 [75.5 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.4-1 [399 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-2.2 [282 kB]
+Get:34 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-2.2 [333 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.0-7 [231 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.0-7 [4378 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.0-5 [1126 B]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2-8 [210 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2-8 [256 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.21.8-1 [347 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.44-2 [177 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-1 [16.4 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-1 [21.9 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-2 [36.9 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.3-1 [857 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-2 [14.3 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-2 [9186 B]
+Get:50 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-1 [30.4 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6 [959 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-2 [26.1 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-1 [49.8 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-1 [94.2 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main libjpeg62-dev mipsel 6b1-1 [206 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.0-4 [4572 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.0-4 [5190 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:61 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-1 [41.3 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-2 [56.6 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.3-6 [417 kB]
+Get:64 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24 [21.2 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24 [18.1 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-3 [113 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-3 [315 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.44-2 [279 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-1 [269 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-1 [880 B]
+Get:72 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-1 [27.8 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-1 [48.6 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-1 [16.4 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-1 [187 kB]
+Get:77 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-3 [353 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-4 [202 kB]
+Get:79 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.9-2 [1593 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.9-2 [1166 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.0-1 [14.6 MB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 67.3 MB in 13s (5158 kB/s)
+(Reading database ... 11420 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-7_mipsel.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-7_mipsel.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-7) ...
+(Reading database ... 11420 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-7) ...
+(Reading database ... 11420 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-7_mipsel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-7_mipsel.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-7) ...
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 11420 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mipsel.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_mipsel.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_mipsel.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_mipsel.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mipsel.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mipsel.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mipsel.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_mipsel.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_mipsel.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mipsel.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mipsel.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_mipsel.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mipsel.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mipsel.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mipsel.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mipsel.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mipsel.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mipsel.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_mipsel.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_mipsel.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mipsel.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24_mipsel.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_mipsel.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mipsel.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_mipsel.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_mipsel.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mipsel.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mipsel.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mipsel.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_mipsel.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_mipsel.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_mipsel.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Setting up libgomp1 (4.6.0-7) ...
+Setting up cpp-4.6 (4.6.0-7) ...
+Setting up gcc-4.6 (4.6.0-7) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-1) ...
+Setting up libreadline-dev (6.2-1) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.0-7) ...
+Setting up g++-4.6 (4.6.0-7) ...
+Removing negative dependencies:
+Checking correctness of source dependencies...
+Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
+Toolchain package versions: libc6-dev_2.13-2 dpkg-dev_1.16.0.2 linux-libc-dev_2.6.38-4 gcc-4.6_4.6.0-7 g++-4.6_4.6.0-7 binutils_2.21.51.20110421-3 libstdc++6-4.6-dev_4.6.0-7 libstdc++6_4.6.0-7
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-2 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-2 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4_4.4.6-2 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-18 libdb4.8_4.8.30-7 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture mipsel
+ /usr/bin/fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+ /usr/bin/fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_mipsel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1412
+
+r-bioc-biobase_2.12.1-1_mipsel.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: mipsel
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ 32fbd92ca2408f35421e5168bcadb341f3c4dce6 2670724 r-bioc-biobase_2.12.1-1_mipsel.deb
+Checksums-Sha256:
+ 74f09aa5100980c9d9be7e0fea7f91dcd8b7a027780c70d7389bb35c75c6d141 2670724 r-bioc-biobase_2.12.1-1_mipsel.deb
+Files:
+ a00ab6a7ae5fc04b427442eadccabe3d 2670724 gnu-r optional r-bioc-biobase_2.12.1-1_mipsel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_mipsel.deb
+──────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2670724 bytes: control archive= 4898 bytes.
+ 1188 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: mipsel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3744
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
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+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 487 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 350 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-23c29605-54e1-4563-8f78-ef5f68337ad7/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP
+Not removing build depends: cloned chroot in use
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1412
+Build needed 00:08:11, 9984k disc space
+
diff --git a/mipsel.log b/mipsel.log
new file mode 100644
index 0000000..d01b947
--- /dev/null
+++ b/mipsel.log
@@ -0,0 +1,929 @@
+From buildd at phrixos.ayous.org Sun May 15 14:12:39 2011
+Return-path: <buildd at phrixos.ayous.org>
+Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
+ helo=alius.ayous.org)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
+ id 1QLc3g-0004wU-Np
+ for logs at buildd.debian.org; Sun, 15 May 2011 14:12:39 +0000
+Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at phrixos.ayous.org>)
+ id 1QLc3e-00082o-96; Sun, 15 May 2011 14:12:34 +0000
+Date: Sun, 15 May 2011 14:12:34 +0000
+Message-Id: <E1QLc3e-00082o-96 at phrixos.ayous.org>
+From: buildd on phrixos <buildd at phrixos.ayous.org>
+To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on mipsel
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (mipsel) 15 May 2011 14:04 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Architecture: mipsel
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-23c29605-54e1-4563-8f78-ef5f68337ad7/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP
+Start Time: 20110515-1404
+Get:1 http://incoming.debian.org unstable InRelease [167 kB]
+Ign http://incoming.debian.org InRelease
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:2 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:3 http://mirror.ayous.org unstable InRelease [167 kB]
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [6576 kB]
+Ign http://mirror.ayous.org unstable/contrib TranslationIndex
+Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2264 B]
+Get:7 http://mirror.ayous.org unstable/main Sources [6576 kB]
+Get:8 http://incoming.debian.org unstable/contrib Sources [59.0 kB]
+Get:9 http://incoming.debian.org unstable/non-free Sources [110 kB]
+Get:10 http://incoming.debian.org unstable/main mipsel Packages [9326 kB]
+Get:11 http://mirror.ayous.org unstable/contrib Sources [59.0 kB]
+Get:12 http://mirror.ayous.org unstable/non-free Sources [110 kB]
+Get:13 http://mirror.ayous.org unstable/main mipsel Packages [9326 kB]
+Get:14 http://incoming.debian.org unstable/contrib mipsel Packages [66.4 kB]
+Get:15 http://incoming.debian.org Release [1604 B]
+Get:16 http://incoming.debian.org Sources [42.3 kB]
+Get:17 http://incoming.debian.org Packages [558 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Get:18 http://mirror.ayous.org unstable/contrib mipsel Packages [66.4 kB]
+Ign http://mirror.ayous.org unstable/contrib Translation-en
+Fetched 33.2 MB in 32s (1034 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 6s (370 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+** Using build dependencies supplied by package:
+Build-Depends: cdbs, debhelper (>= 8), r-base-dev
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Checking for already installed source dependencies...
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for source dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 75 newly installed, 0 to remove and 27 not upgraded.
+Need to get 67.3 MB of archives.
+After this operation, 129 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.0-7 [26.1 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.0-7 [130 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.0-7 [301 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.0-7 [3752 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.0-7 [1668 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.0-7 [6151 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.0-7 [4051 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.0-7 [68.4 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.2 [207 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-5 [1154 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-1 [35.1 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-1 [1008 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-3 [262 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-2+b1 [832 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.93 [75.5 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.4-1 [399 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-2.2 [282 kB]
+Get:34 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-2.2 [333 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.0-7 [231 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.0-7 [4378 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.0-5 [1126 B]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2-8 [210 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2-8 [256 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.21.8-1 [347 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.44-2 [177 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-1 [16.4 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-1 [21.9 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-2 [36.9 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.3-1 [857 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-2 [14.3 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-2 [9186 B]
+Get:50 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-1 [30.4 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6 [959 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-2 [26.1 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-1 [49.8 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-1 [94.2 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main libjpeg62-dev mipsel 6b1-1 [206 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.0-4 [4572 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.0-4 [5190 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:61 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-1 [41.3 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-2 [56.6 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.3-6 [417 kB]
+Get:64 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24 [21.2 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24 [18.1 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-3 [113 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-3 [315 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.44-2 [279 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-1 [269 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-1 [880 B]
+Get:72 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-1 [27.8 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-1 [48.6 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-1 [16.4 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-1 [187 kB]
+Get:77 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-3 [353 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-4 [202 kB]
+Get:79 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.9-2 [1593 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.9-2 [1166 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.0-1 [14.6 MB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 67.3 MB in 13s (5158 kB/s)
+(Reading database ... 11420 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-7_mipsel.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-7_mipsel.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-7) ...
+(Reading database ... 11420 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-7) ...
+(Reading database ... 11420 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-7_mipsel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-7_mipsel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-7_mipsel.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-7) ...
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 11420 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mipsel.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_mipsel.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_mipsel.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_mipsel.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mipsel.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mipsel.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mipsel.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_mipsel.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_mipsel.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mipsel.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mipsel.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libxau6.
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+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mipsel.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mipsel.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mipsel.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mipsel.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mipsel.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mipsel.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_mipsel.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_mipsel.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mipsel.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24_mipsel.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_mipsel.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mipsel.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_mipsel.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_mipsel.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mipsel.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mipsel.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mipsel.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_mipsel.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_mipsel.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_mipsel.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Setting up libgomp1 (4.6.0-7) ...
+Setting up cpp-4.6 (4.6.0-7) ...
+Setting up gcc-4.6 (4.6.0-7) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-1) ...
+Setting up libreadline-dev (6.2-1) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.0-7) ...
+Setting up g++-4.6 (4.6.0-7) ...
+Removing negative dependencies:
+Checking correctness of source dependencies...
+Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
+Toolchain package versions: libc6-dev_2.13-2 dpkg-dev_1.16.0.2 linux-libc-dev_2.6.38-4 gcc-4.6_4.6.0-7 g++-4.6_4.6.0-7 binutils_2.21.51.20110421-3 libstdc++6-4.6-dev_4.6.0-7 libstdc++6_4.6.0-7
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-2 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-2 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4_4.4.6-2 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-18 libdb4.8_4.8.30-7 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture mipsel
+ /usr/bin/fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1'
+ /usr/bin/fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_mipsel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1412
+
+r-bioc-biobase_2.12.1-1_mipsel.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: mipsel
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ 32fbd92ca2408f35421e5168bcadb341f3c4dce6 2670724 r-bioc-biobase_2.12.1-1_mipsel.deb
+Checksums-Sha256:
+ 74f09aa5100980c9d9be7e0fea7f91dcd8b7a027780c70d7389bb35c75c6d141 2670724 r-bioc-biobase_2.12.1-1_mipsel.deb
+Files:
+ a00ab6a7ae5fc04b427442eadccabe3d 2670724 gnu-r optional r-bioc-biobase_2.12.1-1_mipsel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_mipsel.deb
+──────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2670724 bytes: control archive= 4898 bytes.
+ 1188 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: mipsel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3744
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
+drwxr-xr-x root/root 0 2011-05-15 14:12 ./
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/share/
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-05-15 14:12 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1380 2011-04-15 04:11 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 392 2011-05-15 14:09 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10569 2011-05-15 14:09 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 158 2011-05-15 14:09 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/
+-rw-r--r-- root/root 1266 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+-rw-r--r-- root/root 212 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 6600 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 3320 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+-rw-r--r-- root/root 241475 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 851 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 14396 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 1972 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 650 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/CITATION
+-rw-r--r-- root/root 516 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/R/
+-rw-r--r-- root/root 384 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/R/Biobase
+-rw-r--r-- root/root 362004 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
+-rw-r--r-- root/root 8690 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
+drwxr-xr-x root/root 0 2011-05-15 14:12 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 25868 2011-05-15 14:12 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/
+-rw-r--r-- root/root 18067 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
+-rw-r--r-- root/root 5030 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
+-rw-r--r-- root/root 169 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
+-rw-r--r-- root/root 110287 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
+-rw-r--r-- root/root 8632 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
+-rw-r--r-- root/root 3048 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
+-rw-r--r-- root/root 267594 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
+-rw-r--r-- root/root 3727 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 7621 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
+-rw-r--r-- root/root 3067 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
+-rw-r--r-- root/root 79073 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
+-rw-r--r-- root/root 197873 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
+-rw-r--r-- root/root 60321 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
+-rw-r--r-- root/root 76888 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/legacy/
+-rw-r--r-- root/root 13630 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
+-rw-r--r-- root/root 162 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
+-rw-r--r-- root/root 28377 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
+-rw-r--r-- root/root 1426 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/index.html
+-rw-r--r-- root/root 4080 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
+-rw-r--r-- root/root 1653 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/doc/esApply.R
+-rw-r--r-- root/root 3988 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/NEWS
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 1213 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 1122 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 6808 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 5365 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 774 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 2008 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 51239 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/html/00Index.html
+-rw-r--r-- root/root 1179 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/html/R.css
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/
+-rw-r--r-- root/root 580 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 8317 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 20153 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 1257 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 477 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 1515 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 6194 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 180 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 10497 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
+-rw-r--r-- root/root 2040 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 2096 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+-rw-r--r-- root/root 951 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 403 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+-rw-r--r-- root/root 629 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rw-r--r-- root/root 8167 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+-rw-r--r-- root/root 2035 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 1907 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
+-rw-r--r-- root/root 286 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 231 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 62219 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 802 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 105 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 25005 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
+-rw-r--r-- root/root 1166 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 143 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 5537 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 183 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 524 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 167662 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 146 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 62201 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 1016 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 4704 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+-rw-r--r-- root/root 795 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 1235 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 113 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 112 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
+-rw-r--r-- root/root 95238 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 76485 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 92336 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 943 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 4678 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 939 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 4588 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 741 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 998 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+-rw-r--r-- root/root 227 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 105 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 555 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 143 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 4822 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 183 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 146 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+-rw-r--r-- root/root 1014 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 4705 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+-rw-r--r-- root/root 795 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 609 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+-rw-r--r-- root/root 113 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+-rw-r--r-- root/root 110 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
+-rw-r--r-- root/root 705 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+-rw-r--r-- root/root 6194 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 423 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+-rw-r--r-- root/root 4598 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 5015 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 2522 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+-rwxr-xr-x root/root 213 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rwxr-xr-x root/root 39 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 225 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/geneCov.rda
+-rw-r--r-- root/root 40 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.rda
+-rw-r--r-- root/root 609 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/aaMap.rda
+-rw-r--r-- root/root 40 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/sample.eSet.rda
+-rw-r--r-- root/root 2032 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 345999 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 277973 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 28463 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/seD.rda
+-rw-r--r-- root/root 61627 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/geneData.rda
+-rw-r--r-- root/root 25217 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 435 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 40 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.rda
+-rw-r--r-- root/root 2870 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/NAMESPACE
+drwxr-xr-x root/root 0 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 1357 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 1019 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 5631 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 475 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 322 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 5635 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+-rw-r--r-- root/root 3432 2011-05-15 14:11 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 715 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+-rw-r--r-- root/root 109039 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/
+-rw-r--r-- root/root 201 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+drwxr-xr-x root/root 0 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 487 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 350 2011-05-15 14:10 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-23c29605-54e1-4563-8f78-ef5f68337ad7/build/buildd-r-bioc-biobase_2.12.1-1-mipsel-I8pWaP
+Not removing build depends: cloned chroot in use
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1412
+Build needed 00:08:11, 9984k disc space
+
diff --git a/amd64.log b/powerpc.log
similarity index 50%
copy from amd64.log
copy to powerpc.log
index 1d8080a..5fa5656 100644
--- a/amd64.log
+++ b/powerpc.log
@@ -1,94 +1,179 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on aqwa.igloo
+From buildd at voltaire.debian.org Sun May 15 13:23:36 2011
+Return-path: <buildd at voltaire.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at voltaire.debian.org>)
+ id 1QLbIG-0004zv-5q
+ for logs at buildd.debian.org; Sun, 15 May 2011 13:23:36 +0000
+Received: from static-72-66-115-54.washdc.fios.verizon.net ([72.66.115.54]
+ helo=voltaire.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=voltaire.debian.org,
+ EMAIL=hostmaster at voltaire.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at voltaire.debian.org>)
+ id 1QLbIE-0007rW-NJ; Sun, 15 May 2011 13:23:35 +0000
+Received: from buildd by voltaire.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at voltaire.debian.org>)
+ id 1QLbI8-0008EA-0i; Sun, 15 May 2011 13:23:28 +0000
+From: buildd on voltaire <buildd at voltaire.debian.org>
+To: wouter+buildd at grep.be,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on powerpc
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QLbI8-0008EA-0i at voltaire.debian.org>
+Date: Sun, 15 May 2011 13:23:28 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on voltaire.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.1-1 (amd64) 14 mai 2011 22:52 ║
+║ r-bioc-biobase 2.12.1-1 (powerpc) 15 May 2011 13:17 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
Version: 2.12.1-1
Source Version: 2.12.1-1
-Distribution: unstable
-Architecture: amd64
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-Pv5C1p' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-b4fe8806-f9a3-4be9-b079-01db89bc8a53' with '«CHROOT»'
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Hit ftp://ftp.jaist.ac.jp sid InRelease
-Hit ftp://ftp.jaist.ac.jp sid/main Sources/DiffIndex
-Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
-Hit ftp://ftp.jaist.ac.jp sid/main TranslationIndex
-Hit ftp://ftp.jaist.ac.jp sid/main Translation-fr
+Architecture: powerpc
+Hit http://http.us.debian.org sid InRelease
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Get:2 http://incoming.debian.org Release [1604 B]
+Hit http://http.us.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://http.us.debian.org sid/contrib Sources/DiffIndex
+Hit http://http.us.debian.org sid/main powerpc Packages/DiffIndex
+Hit http://http.us.debian.org sid/contrib powerpc Packages/DiffIndex
+Ign http://http.us.debian.org sid/contrib TranslationIndex
+Hit http://http.us.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main powerpc Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib powerpc Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Get:3 http://incoming.debian.org Sources [35.8 kB]
+Get:4 http://incoming.debian.org Packages [359 kB]
+Ign http://http.us.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Ign http://incoming.debian.org sid/contrib Translation-en
+Fetched 398 kB in 18s (21.7 kB/s)
Reading package lists...
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
-Local sources
-─────────────
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
-r-bioc-biobase_2.12.1-1.dsc exists in .; copying to chroot
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 1s (1848 kB/s)
+Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-dJHRTB/apt_archive/sbuild-build-depends-core-dummy.deb'.
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/702 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 12450 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
-dpkg-deb: building package `sbuild-build-depends-r-bioc-biobase-dummy' in `/«BUILDDIR»/resolver-3lDxGo/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'.
-OK
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Checking correctness of dependencies...
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 67450 package 'am-utils':
+ 'Replaces' field, reference to 'amd': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 67453 package 'am-utils':
+ 'Conflicts' field, reference to 'amd': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 159834 package 'root-tail':
+ 'Conflicts' field, reference to 'rt': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 199301 package 'wmnetselect':
+ 'Suggests' field, reference to 'mozilla': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 449742 package 'cnews':
+ error in Version string 'cr.g7-40.2': version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 603167 package 'epic4':
+ 'Conflicts' field, reference to 'epic4-help': error in version: version number does not start with digit
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-biobase build dependencies (apt-based resolver) │
+│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-2)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
@@ -96,8 +181,8 @@ The following extra packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
@@ -120,81 +205,56 @@ The following NEW packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev sbuild-build-depends-r-bioc-biobase-dummy tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 33.1 MB/53.2 MB of archives.
-After this operation, 131 MB of additional disk space will be used.
-Get:1 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main groff-base amd64 1.21-5 [1157 kB]
-Get:2 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpipeline1 amd64 1.2.0-1 [38.3 kB]
-Get:3 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main man-db amd64 2.6.0.2-1 [1025 kB]
-Get:4 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libmagic1 amd64 5.04-5+b1 [233 kB]
-Get:5 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main file amd64 5.04-5+b1 [49.8 kB]
-Get:6 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxml2 amd64 2.7.8.dfsg-2+b1 [885 kB]
-Get:7 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:8 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB]
-Get:9 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB]
-Get:10 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main debhelper all 8.1.6 [557 kB]
-Get:11 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main cdbs all 0.4.93 [75.5 kB]
-Get:12 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main fontconfig-config all 2.8.0-2.2 [218 kB]
-Get:13 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libfontconfig1 amd64 2.8.0-2.2 [284 kB]
-Get:14 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main fontconfig amd64 2.8.0-2.2 [335 kB]
-Get:15 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libgfortran3 amd64 4.6.0-7 [358 kB]
-Get:16 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gfortran-4.6 amd64 4.6.0-7 [5551 kB]
-Get:17 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gfortran amd64 4:4.6.0-5 [1128 B]
-Get:18 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpixman-1-0 amd64 0.21.8-1 [364 kB]
-Get:19 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpng12-0 amd64 1.2.44-2 [182 kB]
-Get:20 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libx11-data all 2:1.4.3-1 [186 kB]
-Get:21 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libx11-6 amd64 2:1.4.3-1 [890 kB]
-Get:22 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libcairo2 amd64 1.10.2-6 [956 kB]
-Get:23 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libdatrie1 amd64 0.2.4-2 [27.4 kB]
-Get:24 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main x11-common all 1:7.6+6 [280 kB]
-Get:25 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libncurses5-dev amd64 5.9-1 [507 kB]
-Get:26 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libthai-data all 0.1.15-1 [201 kB]
-Get:27 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libthai0 amd64 0.1.15-1 [42.2 kB]
-Get:28 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpango1.0-0 amd64 1.28.3-6 [441 kB]
-Get:29 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpng12-dev amd64 1.2.44-2 [273 kB]
-Get:30 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libreadline6-dev amd64 6.2-1 [264 kB]
-Get:31 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libreadline-dev amd64 6.2-1 [878 B]
-Get:32 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libtiff4 amd64 3.9.5-1 [200 kB]
-Get:33 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxext6 amd64 2:1.3.0-1 [52.3 kB]
-Get:34 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxt6 amd64 1:1.1.1-1 [205 kB]
-Get:35 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main r-base-core amd64 2.13.0-1 [15.1 MB]
-Get:36 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main r-base-dev all 2.13.0-1 [3488 B]
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 33.1 MB in 1min 12s (455 kB/s)
+0 upgraded, 75 newly installed, 0 to remove and 9 not upgraded.
+Need to get 0 B/50.9 MB of archives.
+After this operation, 122 MB of additional disk space will be used.
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 67450 package 'am-utils':
+ 'Replaces' field, reference to 'amd': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 67453 package 'am-utils':
+ 'Conflicts' field, reference to 'amd': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 159834 package 'root-tail':
+ 'Conflicts' field, reference to 'rt': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 199301 package 'wmnetselect':
+ 'Suggests' field, reference to 'mozilla': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 449742 package 'cnews':
+ error in Version string 'cr.g7-40.2': version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 603167 package 'epic4':
+ 'Conflicts' field, reference to 'epic4-help': error in version: version number does not start with digit
Selecting previously deselected package bsdmainutils.
-(Reading database ... 12450 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+(Reading database ... 10644 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_powerpc.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_powerpc.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_amd64.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_powerpc.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-1_powerpc.deb) ...
Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_powerpc.deb) ...
Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
+Unpacking file (from .../file_5.04-5+b1_powerpc.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_powerpc.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_powerpc.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_powerpc.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_powerpc.deb) ...
Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_powerpc.deb) ...
Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_powerpc.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-3_powerpc.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
@@ -206,117 +266,115 @@ Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_powerpc.deb) ...
Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_amd64.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_powerpc.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_powerpc.deb) ...
Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_powerpc.deb) ...
Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_amd64.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_powerpc.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_powerpc.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_powerpc.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_powerpc.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_powerpc.deb) ...
Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_powerpc.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_amd64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_powerpc.deb) ...
Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_powerpc.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_powerpc.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_powerpc.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-2_powerpc.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_amd64.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_powerpc.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_powerpc.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_powerpc.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_powerpc.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_powerpc.deb) ...
Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_amd64.deb) ...
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_powerpc.deb) ...
Selecting previously deselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_powerpc.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_powerpc.deb) ...
Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_powerpc.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_powerpc.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_powerpc.deb) ...
Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_powerpc.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.15-1_powerpc.deb) ...
Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
+Unpacking libxft2 (from .../libxft2_2.2.0-2_powerpc.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_powerpc.deb) ...
Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24_amd64.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24_powerpc.deb) ...
Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_powerpc.deb) ...
Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_powerpc.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_powerpc.deb) ...
Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_powerpc.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_powerpc.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.1-3_powerpc.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.1-3_powerpc.deb) ...
Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_powerpc.deb) ...
Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_powerpc.deb) ...
Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_amd64.deb) ...
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_powerpc.deb) ...
Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_powerpc.deb) ...
Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_powerpc.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_amd64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-3_powerpc.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../unzip_6.0-4_powerpc.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_powerpc.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_powerpc.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_powerpc.deb) ...
Selecting previously deselected package r-base-dev.
Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-biobase-dummy.
-Unpacking sbuild-build-depends-r-bioc-biobase-dummy (from .../sbuild-build-depends-r-bioc-biobase-dummy.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
@@ -371,8 +429,6 @@ Setting up libxrender1 (1:0.9.6-1) ...
Setting up libcairo2 (1.10.2-6) ...
Setting up libdatrie1 (0.2.4-2) ...
Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-1) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libjpeg62-dev (6b1-1) ...
@@ -393,8 +449,8 @@ Setting up libpcrecpp0 (8.12-3) ...
Setting up libpcre3-dev (8.12-3) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.44-2) ...
-Setting up libreadline6-dev (6.2-1) ...
-Setting up libreadline-dev (6.2-1) ...
+Setting up libreadline6-dev (6.1-3) ...
+Setting up libreadline-dev (6.1-3) ...
Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
Setting up libxext6 (2:1.3.0-1) ...
@@ -412,15 +468,27 @@ Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-1) ...
-Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-7 gcc-4.4_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.6_4.6.0-7 libc6-dev_2.13-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-5
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-3 cpp-4.5_4.5.3-1 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.5 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c2_0.10.2-9 libppl-c4_0.11.2-3 libppl7_0.10.2-9 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-7 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+Checking correctness of dependencies...
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 67450 package 'am-utils':
+ 'Replaces' field, reference to 'amd': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 67453 package 'am-utils':
+ 'Conflicts' field, reference to 'amd': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 159834 package 'root-tail':
+ 'Conflicts' field, reference to 'rt': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 199301 package 'wmnetselect':
+ 'Suggests' field, reference to 'mozilla': error in version: version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 449742 package 'cnews':
+ error in Version string 'cr.g7-40.2': version number does not start with digit
+dpkg: warning: parsing file '/var/lib/dpkg/available' near line 603167 package 'epic4':
+ 'Conflicts' field, reference to 'epic4-help': error in version: version number does not start with digit
+Kernel: Linux 2.6.26-2-powerpc-smp powerpc (ppc)
+Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 libc6-dev_2.13-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-5
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.1-3 libreadline6_6.1-3 libreadline6-dev_6.1-3 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -430,8 +498,9 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 14 13:35:55 2011 UTC using RSA key ID 2295D502
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
@@ -441,11 +510,11 @@ dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
@@ -453,18 +522,25 @@ dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
dpkg-buildpackage: source version 2.12.1-1
-dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-bioc-biobase-2.12.1
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: host architecture powerpc
fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -480,32 +556,42 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-biobase-2.12.1
-dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
-dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-biobase using existing r-bioc-biobase_2.12.1.orig.tar.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.1-1.diff.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.1-1.dsc
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
- fakeroot debian/rules binary
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -515,26 +601,26 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-installing to /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -545,13 +631,13 @@ installing to /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
@@ -587,36 +673,25 @@ dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-biobase_2.12.1-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (voltaire) <buildd_powerpc-voltaire at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_powerpc.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-biobase-2.12.1
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110514-2255
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-biobase_2.12.1-1_amd64.changes:
-──────────────────────────────────────
+Build finished at 20110515-1322
+r-bioc-biobase_2.12.1-1_powerpc.changes:
Format: 1.8
Date: Sat, 14 May 2011 22:35:11 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
-Architecture: source amd64
+Architecture: powerpc
Version: 2.12.1-1
-Distribution: unstable
+Distribution: sid
Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: powerpc Build Daemon (voltaire) <buildd_powerpc-voltaire at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
@@ -626,36 +701,27 @@ Changes:
.
* Initial release (Closes: #169859)
Checksums-Sha1:
- aedfeccaf756cd7b517bac5ccb17f9776e937bfa 1058 r-bioc-biobase_2.12.1-1.dsc
- 3a9ae10356cee7c57acc36a410e480bbcff5523a 2222976 r-bioc-biobase_2.12.1.orig.tar.gz
- f027d203820d485d6edab7740e0f2b3404bad3e2 5336 r-bioc-biobase_2.12.1-1.diff.gz
- 2bcc524ff3a4c74c9a3af4029035f9c5d0428ec2 2672936 r-bioc-biobase_2.12.1-1_amd64.deb
+ f6e90dd36fc4b8d7868b2f35afd0a360f726e20d 2671418 r-bioc-biobase_2.12.1-1_powerpc.deb
Checksums-Sha256:
- 829f433a8639d40fd1967741c6b8465480d75e1a20285d56ca1e206f7f7f9513 1058 r-bioc-biobase_2.12.1-1.dsc
- 8d16adb779c63228fee029a1d410b8906cae6dd9876a40958f13f469aaf9e608 2222976 r-bioc-biobase_2.12.1.orig.tar.gz
- b50070598aa0c88ab55fd8e423c5955575fadcf48c30a1275c774240cb353cdd 5336 r-bioc-biobase_2.12.1-1.diff.gz
- f52f09d82ce272b5a6c1216813cc328ef264f759ac22b9630cf8368df8e0d927 2672936 r-bioc-biobase_2.12.1-1_amd64.deb
+ b4c1f734c31c0b286a92e7c5097fcfc4c4b6e7bd7c01cf086305fa57ee54febc 2671418 r-bioc-biobase_2.12.1-1_powerpc.deb
Files:
- 1c9c80465edcc7e4cd20e0e8eb6479e5 1058 gnu-r optional r-bioc-biobase_2.12.1-1.dsc
- 893dc8abd60e3cebae58a000ffb15288 2222976 gnu-r optional r-bioc-biobase_2.12.1.orig.tar.gz
- 8ce50984d1b64d94ecbec9646ff5821b 5336 gnu-r optional r-bioc-biobase_2.12.1-1.diff.gz
- d5fe23272e247c9bd3debf0caf6e08e1 2672936 gnu-r optional r-bioc-biobase_2.12.1-1_amd64.deb
+ 70a1b6bc035a507cdd5d033e4b25bded 2671418 gnu-r optional r-bioc-biobase_2.12.1-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.1-1_amd64.deb
-─────────────────────────────────
+r-bioc-biobase_2.12.1-1_powerpc.deb
+───────────────────────────────────
new debian package, version 2.0.
- size 2672936 bytes: control archive= 4890 bytes.
- 1187 bytes, 25 lines control
+ size 2671418 bytes: control archive= 4897 bytes.
+ 1189 bytes, 25 lines control
13326 bytes, 141 lines md5sums
Package: r-bioc-biobase
Version: 2.12.1-1
- Architecture: amd64
+ Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 3740
Depends: libc6 (>= 2.3), r-base-core (>= 2.13.0~)
@@ -679,202 +745,198 @@ r-bioc-biobase_2.12.1-1_amd64.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/
-drwxr-xr-x root/root 0 2011-05-14 22:54 ./usr/lib/
-drwxr-xr-x root/root 0 2011-05-14 22:54 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/R/
--rw-r--r-- root/root 91 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
--rw-r--r-- root/root 201 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/
--rw-r--r-- root/root 487 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
--rw-r--r-- root/root 350 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
--rw-r--r-- root/root 3988 2011-05-14 22:54 ./usr/lib/R/site-library/Biobase/NEWS
--rw-r--r-- root/root 516 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/testClass.R
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 774 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 2008 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
--rw-r--r-- root/root 1213 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 5365 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 6808 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 1122 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/
--rw-r--r-- root/root 109039 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
--rw-r--r-- root/root 715 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 361987 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8695 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/
--rw-r--r-- root/root 212 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 5635 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 1022 2011-05-14 22:54 ./usr/lib/R/site-library/Biobase/Meta/package.rds
--rw-r--r-- root/root 5631 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 475 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
--rw-r--r-- root/root 3432 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 1357 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
--rw-r--r-- root/root 322 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/data.rds
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 21992 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/help/
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┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Finished │
└──────────────────────────────────────────────────────────────────────────────┘
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-35b8df6f-bf27-4ba1-8129-07432c0ce9d4/build/buildd-r-bioc-biobase_2.12.1-1-powerpc-lGk9XQ
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
@@ -887,13 +949,11 @@ The following packages will be REMOVED:
libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data*
libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* sbuild-build-depends-core-dummy*
- sbuild-build-depends-r-bioc-biobase-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
- ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded.
-After this operation, 131 MB disk space will be freed.
-(Reading database ... 16396 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-biobase-dummy ...
+ r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common*
+ xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 75 to remove and 9 not upgraded.
+After this operation, 122 MB disk space will be freed.
+(Reading database ... 14585 files and directories currently installed.)
Removing cdbs ...
Removing debhelper ...
Removing man-db ...
@@ -906,6 +966,7 @@ Purging configuration files for dpatch ...
Removing file ...
Removing r-base-core ...
Purging configuration files for r-base-core ...
+dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
Removing libpango1.0-0 ...
Purging configuration files for libpango1.0-0 ...
Removing fontconfig ...
@@ -920,6 +981,8 @@ Removing libfontconfig1 ...
Purging configuration files for libfontconfig1 ...
Removing fontconfig-config ...
Purging configuration files for fontconfig-config ...
+dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.avail' not empty so not removed.
+dpkg: warning: while removing fontconfig-config, directory '/etc/fonts' not empty so not removed.
Removing po-debconf ...
Removing intltool-debian ...
Removing gettext ...
@@ -1005,7 +1068,6 @@ Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
@@ -1014,9 +1076,8 @@ Purging configuration files for ucf ...
Removing unzip ...
Purging configuration files for unzip ...
Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
@@ -1025,18 +1086,19 @@ Removing zlib1g-dev ...
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 12168
-Build-Time: 23
-Distribution: unstable
-Install-Time: 111
-Job: r-bioc-biobase_2.12.1-1.dsc
+Architecture: powerpc
+Build-Space: 9980
+Build-Time: 145
+Distribution: sid
+Install-Time: 129
+Job: r-bioc-biobase_2.12.1-1
Package: r-bioc-biobase
-Package-Time: 138
+Package-Time: 318
Source-Version: 2.12.1-1
-Space: 12168
+Space: 9980
Status: successful
Version: 2.12.1-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110514-2255
-Build needed 00:02:18, 12168k disc space
+Finished at 20110515-1322
+Build needed 00:05:18, 9980k disc space
+
diff --git a/s390.log b/s390.log
new file mode 100644
index 0000000..850330d
--- /dev/null
+++ b/s390.log
@@ -0,0 +1,1039 @@
+From buildd at zandonai.debian.org Sun May 15 13:58:26 2011
+Return-path: <buildd at zandonai.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
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+ for logs at buildd.debian.org; Sun, 15 May 2011 13:58:26 +0000
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+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
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+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
+Date: Sun, 15 May 2011 13:58:24 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on s390 (dist=sid)
+Key-Id: 9BD94C88
+Message-Id: <E1QLbpw-0005Zx-SB at zandonai.debian.org>
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (s390) 15 May 2011 13:56 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Source Version: 2.12.1-1
+Architecture: s390
+Get:1 http://ftp.de.debian.org unstable InRelease [167 kB]
+Get:2 http://ftp.de.debian.org unstable/main Sources [5215 kB]
+Get:3 http://incoming.debian.org unstable InRelease [167 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5215 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [50.1 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [91.5 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7099 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [53.3 kB]
+Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://ftp.de.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [50.1 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [91.5 kB]
+Get:13 http://incoming.debian.org unstable/main s390 Packages [7099 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390 Packages [53.3 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.3 kB]
+Get:18 http://incoming.debian.org Packages [357 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 25.8 MB in 25s (1024 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 4s (501 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 29 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 29 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.2)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-2)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 75 newly installed, 0 to remove and 21 not upgraded.
+Need to get 61.8 MB of archives.
+After this operation, 117 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390 4.6.0-7 [30.4 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.0-7 [130 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390 4.6.0-7 [368 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.0-7 [3813 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.0-7 [1674 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390 4.6.0-7 [5841 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.0-7 [4171 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390 1:4.6.0-7 [31.2 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.2 [208 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-5 [1158 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-1 [38.7 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-1 [1017 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5+b1 [243 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5+b1 [50.1 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-3 [142 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-3 [262 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-2+b1 [873 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.6-1 [1639 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-4 [431 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.93 [75.5 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7 [137 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.4-1 [416 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-2.2 [285 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-2.2 [335 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.0-7 [297 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.0-7 [4508 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.0-5 [1122 B]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2-8 [192 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2-8 [206 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-6 [36.9 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.21.8-1 [357 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.44-2 [181 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-1 [16.8 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-1 [23.1 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-2 [47.0 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.3-1 [885 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-2 [16.7 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-2 [9466 B]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-1 [30.6 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6 [952 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-2 [27.9 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-1 [56.6 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libjpeg62 s390 6b1-1 [95.2 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libjpeg62-dev s390 6b1-1 [197 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.0-4 [1661 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.0-4 [1859 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-1 [504 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-1 [43.5 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-2 [59.6 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.28.3-6 [443 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24 [21.6 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24 [18.2 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-3 [113 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-3 [308 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.44-2 [271 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-1 [254 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-1 [878 B]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-1 [29.9 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-1 [206 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-1 [52.2 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-1 [16.5 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-1 [205 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-3 [342 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-4 [192 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.9-2 [1632 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.9-2 [1196 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.13.0-1 [14.9 MB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.13.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 61.8 MB in 16s (3666 kB/s)
+(Reading database ... 10521 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-7_s390.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-7_s390.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-7) ...
+(Reading database ... 10521 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-7_s390.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-7) ...
+(Reading database ... 10521 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-7_s390.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-7_s390.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-7_s390.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-7_s390.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-7_s390.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-7) ...
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10521 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_s390.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_s390.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_s390.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_s390.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_s390.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_s390.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_s390.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_s390.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_s390.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_s390.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_s390.deb) ...
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+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_s390.deb) ...
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+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_s390.deb) ...
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+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_s390.deb) ...
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+Unpacking zip (from .../archives/zip_3.0-3_s390.deb) ...
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+Unpacking unzip (from .../archives/unzip_6.0-4_s390.deb) ...
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+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_s390.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_s390.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_s390.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Setting up libgomp1 (4.6.0-7) ...
+Setting up cpp-4.6 (4.6.0-7) ...
+Setting up gcc-4.6 (4.6.0-7) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.6 (4.6.0-7) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-1) ...
+Setting up libreadline-dev (6.2-1) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.0-7) ...
+Setting up g++-4.6 (4.6.0-7) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 21 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-bpo.5-s390x s390 (s390x)
+Toolchain package versions: binutils_2.21.51.20110421-3 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 libc6-dev_2.13-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-4
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture s390
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_s390.deb'.
+ dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_s390.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1358
+
+r-bioc-biobase_2.12.1-1_s390.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: s390
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ e314e62e3acace76c64cc14cf9087ef6b04d697f 2671636 r-bioc-biobase_2.12.1-1_s390.deb
+Checksums-Sha256:
+ c73b2a599eaa38f2115dfbca3de2c4adf4eea93804359fa91b8edf6d07933c66 2671636 r-bioc-biobase_2.12.1-1_s390.deb
+Files:
+ 460502d5062a60ed7d1513eee4bcc33c 2671636 gnu-r optional r-bioc-biobase_2.12.1-1_s390.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_s390.deb
+────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2671636 bytes: control archive= 4887 bytes.
+ 1186 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: s390
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3740
+ Depends: libc6 (>= 2.3), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/
+-rw-r--r-- root/root 6600 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/R/
+-rw-r--r-- root/root 8701 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
+-rw-r--r-- root/root 362000 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
+-rw-r--r-- root/root 384 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/R/Biobase
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 1179 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 51239 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/html/00Index.html
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 20700 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 5365 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 2008 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 1213 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 6808 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 774 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 1122 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 3988 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/NEWS
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 40 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.rda
+-rw-r--r-- root/root 225 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/geneCov.rda
+-rw-r--r-- root/root 435 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 61627 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/geneData.rda
+-rw-r--r-- root/root 345999 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 2032 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 25217 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 40 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.rda
+-rw-r--r-- root/root 277973 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 609 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/aaMap.rda
+-rw-r--r-- root/root 40 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/sample.eSet.rda
+-rw-r--r-- root/root 28463 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/data/seD.rda
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 1983 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 241272 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 854 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 3320 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+-rw-r--r-- root/root 14396 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/help/AnIndex
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/
+-rw-r--r-- root/root 2522 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+-rw-r--r-- root/root 8167 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 62201 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 1016 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 92336 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 802 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 524 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 1235 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 183 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 231 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 5537 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 105 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 62219 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 113 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 4704 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+-rw-r--r-- root/root 1166 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 143 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 76485 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 795 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 167662 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
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+-rw-r--r-- root/root 286 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
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+-rw-r--r-- root/root 2035 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 4598 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 1257 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 6194 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 951 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 180 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2096 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+-rw-r--r-- root/root 20153 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
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+-rw-r--r-- root/root 629 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
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+-rw-r--r-- root/root 477 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 2870 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/NAMESPACE
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+-rw-r--r-- root/root 715 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+-rw-r--r-- root/root 109039 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
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+-rw-r--r-- root/root 76888 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
+-rw-r--r-- root/root 7621 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
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+-rw-r--r-- root/root 79073 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
+-rw-r--r-- root/root 267594 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
+-rw-r--r-- root/root 60321 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
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+-rw-r--r-- root/root 110287 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
+-rw-r--r-- root/root 18067 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
+-rw-r--r-- root/root 3727 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 169 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
+-rw-r--r-- root/root 1426 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/index.html
+-rw-r--r-- root/root 3067 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
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+-rw-r--r-- root/root 13630 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
+-rw-r--r-- root/root 197873 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
+-rw-r--r-- root/root 8632 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
+-rw-r--r-- root/root 28377 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
+-rw-r--r-- root/root 3048 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
+-rw-r--r-- root/root 1260 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/DESCRIPTION
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+-rw-r--r-- root/root 350 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 201 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
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+-rw-r--r-- root/root 1357 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 475 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 5631 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 3432 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+-rw-r--r-- root/root 1018 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 322 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 5635 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+-rw-r--r-- root/root 650 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/CITATION
+-rw-r--r-- root/root 516 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/ExpressionSet/
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+-rw-r--r-- root/root 180 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 212 2011-05-15 13:58 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/share/
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-05-15 13:58 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1380 2011-04-15 04:11 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 392 2011-05-15 13:58 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 158 2011-05-15 13:58 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 10569 2011-05-15 13:58 ./usr/share/doc/r-bioc-biobase/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390-sbuild-561851f9-35c3-4f4c-9b19-76fe55daaae8/build/buildd-r-bioc-biobase_2.12.1-1-s390-ondiG3
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390
+Build-Space: 9980
+Build-Time: 18
+Distribution: sid
+Install-Time: 62
+Job: r-bioc-biobase_2.12.1-1
+Package: r-bioc-biobase
+Package-Time: 115
+Source-Version: 2.12.1-1
+Space: 9980
+Status: successful
+Version: 2.12.1-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1358
+Build needed 00:01:55, 9980k disc space
+Signature with key '9BD94C88' requested:
diff --git a/sparc.log b/sparc.log
new file mode 100644
index 0000000..84e2f0b
--- /dev/null
+++ b/sparc.log
@@ -0,0 +1,1001 @@
+From buildd at schroeder.debian.org Sun May 15 17:49:42 2011
+Return-path: <buildd at schroeder.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
+ id 1QLfRm-0008Ak-2D
+ for logs at buildd.debian.org; Sun, 15 May 2011 17:49:42 +0000
+Received: from schroeder.debian.org ([193.198.184.11])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=schroeder.debian.org,
+ EMAIL=hostmaster at schroeder.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at schroeder.debian.org>)
+ id 1QLfRo-0006vH-92
+ for logs at buildd.debian.org; Sun, 15 May 2011 17:49:44 +0000
+Received: from buildd by schroeder.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at schroeder.debian.org>)
+ id 1QLfRk-0001AM-Ee; Sun, 15 May 2011 17:49:40 +0000
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
+Date: Sun, 15 May 2011 17:49:40 +0000
+From: buildd on schroeder <buildd at schroeder.debian.org>
+To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.12.1-1 on sparc
+ (dist=sid)
+Key-Id: 9BBB678A
+Message-Id: <E1QLfRk-0001AM-Ee at schroeder.debian.org>
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on schroeder.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-biobase 2.12.1-1 (sparc) 15 May 2011 17:44 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-biobase
+Version: 2.12.1-1
+Source Version: 2.12.1-1
+Architecture: sparc
+Get:1 http://ftp.carnet.hr unstable InRelease [167 kB]
+Get:2 http://incoming.debian.org unstable InRelease [167 kB]
+Get:3 http://ftp.carnet.hr unstable/main Sources [5214 kB]
+Get:4 http://ftp.carnet.hr unstable/contrib Sources [49.7 kB]
+Ign http://incoming.debian.org InRelease
+Get:5 http://incoming.debian.org Release.gpg [836 B]
+Get:6 http://ftp.carnet.hr unstable/non-free Sources [91.7 kB]
+Get:7 http://incoming.debian.org unstable/main Sources [5214 kB]
+Get:8 http://ftp.carnet.hr unstable/main sparc Packages [7119 kB]
+Get:9 http://ftp.carnet.hr unstable/contrib sparc Packages [54.3 kB]
+Ign http://ftp.carnet.hr unstable/contrib TranslationIndex
+Get:10 http://ftp.carnet.hr unstable/main TranslationIndex [2264 B]
+Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [91.7 kB]
+Get:13 http://incoming.debian.org unstable/main sparc Packages [7119 kB]
+Get:14 http://incoming.debian.org unstable/contrib sparc Packages [54.3 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Ign http://ftp.carnet.hr unstable/contrib Translation-en
+Get:17 http://incoming.debian.org Sources [27.5 kB]
+Get:18 http://incoming.debian.org Packages [329 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 25.8 MB in 27s (934 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-biobase.git
+Need to get 2230 kB of source archives.
+Get:1 http://ftp.carnet.hr/debian/ unstable/main r-bioc-biobase 2.12.1-1 (dsc) [1944 B]
+Get:2 http://ftp.carnet.hr/debian/ unstable/main r-bioc-biobase 2.12.1-1 (tar) [2223 kB]
+Get:3 http://ftp.carnet.hr/debian/ unstable/main r-bioc-biobase 2.12.1-1 (diff) [5336 B]
+Fetched 2230 kB in 0s (2322 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22+b1)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b2)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-4)
+libc6-dev-sparc64: already installed (2.13-4)
+gcc: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+cdbs: missing
+debhelper: missing
+Using default version 8.1.6
+r-base-dev: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs debhelper r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.4 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.4-multilib gfortran-4.4-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.4 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+0 upgraded, 75 newly installed, 0 to remove and 5 not upgraded.
+Need to get 49.0 MB of archives.
+After this operation, 116 MB of additional disk space will be used.
+Get:1 http://ftp.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.2 [205 kB]
+Get:2 http://ftp.carnet.hr/debian/ unstable/main groff-base sparc 1.21-5 [1152 kB]
+Get:3 http://ftp.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.0-1 [35.8 kB]
+Get:4 http://ftp.carnet.hr/debian/ unstable/main man-db sparc 2.6.0.2-1 [1013 kB]
+Get:5 http://ftp.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5+b1 [239 kB]
+Get:6 http://ftp.carnet.hr/debian/ unstable/main file sparc 5.04-5+b1 [49.6 kB]
+Get:7 http://ftp.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-3 [140 kB]
+Get:8 http://ftp.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-3 [265 kB]
+Get:9 http://ftp.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-2+b1 [840 kB]
+Get:10 http://ftp.carnet.hr/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:11 http://ftp.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:12 http://ftp.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.6-1 [1556 kB]
+Get:13 http://ftp.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
+Get:14 http://ftp.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-4 [424 kB]
+Get:15 http://ftp.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-3 [2006 kB]
+Get:16 http://ftp.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:17 http://ftp.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:18 http://ftp.carnet.hr/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:19 http://ftp.carnet.hr/debian/ unstable/main cdbs all 0.4.93 [75.5 kB]
+Get:20 http://ftp.carnet.hr/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:21 http://ftp.carnet.hr/debian/ unstable/main libexpat1 sparc 2.0.1-7 [131 kB]
+Get:22 http://ftp.carnet.hr/debian/ unstable/main libfreetype6 sparc 2.4.4-1 [386 kB]
+Get:23 http://ftp.carnet.hr/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:24 http://ftp.carnet.hr/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:25 http://ftp.carnet.hr/debian/ unstable/main libfontconfig1 sparc 2.8.0-2.2 [277 kB]
+Get:26 http://ftp.carnet.hr/debian/ unstable/main fontconfig sparc 2.8.0-2.2 [333 kB]
+Get:27 http://ftp.carnet.hr/debian/ unstable/main libgfortran3 sparc 4.6.0-7 [261 kB]
+Get:28 http://ftp.carnet.hr/debian/ unstable/main gfortran-4.4 sparc 4.4.6-3 [3474 kB]
+Get:29 http://ftp.carnet.hr/debian/ unstable/main gfortran sparc 4:4.4.5-9 [1122 B]
+Get:30 http://ftp.carnet.hr/debian/ unstable/main libblas3gf sparc 1.2-8 [200 kB]
+Get:31 http://ftp.carnet.hr/debian/ unstable/main libblas-dev sparc 1.2-8 [209 kB]
+Get:32 http://ftp.carnet.hr/debian/ unstable/main libbz2-dev sparc 1.0.5-6 [36.6 kB]
+Get:33 http://ftp.carnet.hr/debian/ unstable/main libpixman-1-0 sparc 0.21.8-1 [362 kB]
+Get:34 http://ftp.carnet.hr/debian/ unstable/main libpng12-0 sparc 1.2.44-2 [174 kB]
+Get:35 http://ftp.carnet.hr/debian/ unstable/main libxau6 sparc 1:1.0.6-1 [15.9 kB]
+Get:36 http://ftp.carnet.hr/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-1 [21.7 kB]
+Get:37 http://ftp.carnet.hr/debian/ unstable/main libxcb1 sparc 1.7-2 [40.8 kB]
+Get:38 http://ftp.carnet.hr/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:39 http://ftp.carnet.hr/debian/ unstable/main libx11-6 sparc 2:1.4.3-1 [842 kB]
+Get:40 http://ftp.carnet.hr/debian/ unstable/main libxcb-render0 sparc 1.7-2 [15.2 kB]
+Get:41 http://ftp.carnet.hr/debian/ unstable/main libxcb-shm0 sparc 1.7-2 [9122 B]
+Get:42 http://ftp.carnet.hr/debian/ unstable/main libxrender1 sparc 1:0.9.6-1 [28.6 kB]
+Get:43 http://ftp.carnet.hr/debian/ unstable/main libcairo2 sparc 1.10.2-6 [928 kB]
+Get:44 http://ftp.carnet.hr/debian/ unstable/main libdatrie1 sparc 0.2.4-2 [25.1 kB]
+Get:45 http://ftp.carnet.hr/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:46 http://ftp.carnet.hr/debian/ unstable/main libice6 sparc 2:1.0.7-1 [50.7 kB]
+Get:47 http://ftp.carnet.hr/debian/ unstable/main libjpeg62 sparc 6b1-1 [87.1 kB]
+Get:48 http://ftp.carnet.hr/debian/ unstable/main libjpeg62-dev sparc 6b1-1 [191 kB]
+Get:49 http://ftp.carnet.hr/debian/ unstable/main liblapack3gf sparc 3.3.0-4 [3978 kB]
+Get:50 http://ftp.carnet.hr/debian/ unstable/main liblapack-dev sparc 3.3.0-4 [4300 kB]
+Get:51 http://ftp.carnet.hr/debian/ unstable/main libncurses5-dev sparc 5.9-1 [481 kB]
+Get:52 http://ftp.carnet.hr/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:53 http://ftp.carnet.hr/debian/ unstable/main libthai0 sparc 0.1.15-1 [41.1 kB]
+Get:54 http://ftp.carnet.hr/debian/ unstable/main libxft2 sparc 2.2.0-2 [54.8 kB]
+Get:55 http://ftp.carnet.hr/debian/ unstable/main libpango1.0-0 sparc 1.28.3-6 [414 kB]
+Get:56 http://ftp.carnet.hr/debian/ unstable/main libpaper1 sparc 1.1.24 [21.0 kB]
+Get:57 http://ftp.carnet.hr/debian/ unstable/main libpaper-utils sparc 1.1.24 [17.9 kB]
+Get:58 http://ftp.carnet.hr/debian/ unstable/main libpcrecpp0 sparc 8.12-3 [112 kB]
+Get:59 http://ftp.carnet.hr/debian/ unstable/main libpcre3-dev sparc 8.12-3 [312 kB]
+Get:60 http://ftp.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
+Get:61 http://ftp.carnet.hr/debian/ unstable/main libpng12-dev sparc 1.2.44-2 [265 kB]
+Get:62 http://ftp.carnet.hr/debian/ unstable/main libreadline6-dev sparc 6.2-1 [258 kB]
+Get:63 http://ftp.carnet.hr/debian/ unstable/main libreadline-dev sparc 6.2-1 [880 B]
+Get:64 http://ftp.carnet.hr/debian/ unstable/main libsm6 sparc 2:1.2.0-1 [28.5 kB]
+Get:65 http://ftp.carnet.hr/debian/ unstable/main libtiff4 sparc 3.9.5-1 [192 kB]
+Get:66 http://ftp.carnet.hr/debian/ unstable/main libxext6 sparc 2:1.3.0-1 [47.3 kB]
+Get:67 http://ftp.carnet.hr/debian/ unstable/main libxss1 sparc 1:1.2.1-1 [15.9 kB]
+Get:68 http://ftp.carnet.hr/debian/ unstable/main libxt6 sparc 1:1.1.1-1 [184 kB]
+Get:69 http://ftp.carnet.hr/debian/ unstable/main zip sparc 3.0-3 [335 kB]
+Get:70 http://ftp.carnet.hr/debian/ unstable/main unzip sparc 6.0-4 [190 kB]
+Get:71 http://ftp.carnet.hr/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:72 http://ftp.carnet.hr/debian/ unstable/main tcl8.5 sparc 8.5.9-2 [1579 kB]
+Get:73 http://ftp.carnet.hr/debian/ unstable/main tk8.5 sparc 8.5.9-2 [1142 kB]
+Get:74 http://ftp.carnet.hr/debian/ unstable/main r-base-core sparc 2.13.0-1 [15.0 MB]
+Get:75 http://ftp.carnet.hr/debian/ unstable/main r-base-dev all 2.13.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 49.0 MB in 31s (1570 kB/s)
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10783 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_sparc.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_sparc.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_sparc.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_sparc.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_sparc.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_sparc.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_sparc.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_sparc.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_sparc.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_sparc.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_sparc.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_sparc.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_sparc.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_sparc.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_sparc.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_sparc.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_sparc.deb) ...
+Selecting previously deselected package gfortran-4.4.
+Unpacking gfortran-4.4 (from .../gfortran-4.4_4.4.6-3_sparc.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.4.5-9_sparc.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_sparc.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_sparc.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_sparc.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_sparc.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_sparc.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_sparc.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_sparc.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_sparc.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_sparc.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_sparc.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_sparc.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_sparc.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_sparc.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_sparc.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_sparc.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_sparc.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_sparc.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_sparc.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_sparc.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_sparc.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_sparc.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_sparc.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_sparc.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24_sparc.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_sparc.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_sparc.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_sparc.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_sparc.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_sparc.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_sparc.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_sparc.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_sparc.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_sparc.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_sparc.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_sparc.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_sparc.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-4_sparc.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_sparc.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_sparc.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-1_sparc.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.93) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-7) ...
+Setting up gfortran-4.4 (4.4.6-3) ...
+Setting up gfortran (4:4.4.5-9) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-1) ...
+Setting up libreadline-dev (6.2-1) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-bpo.5-sparc64-smp sparc (sparc64)
+Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 gcc-4.4_4.4.6-3 libc6-dev_2.13-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 linux-libc-dev_2.6.38-5
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22+b1 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.4.5-9 cpp-4.4_4.4.6-3 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b2 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-9 g++-4.4_4.4.6-3 gcc_4:4.4.5-9 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.4.5-9 gfortran-4.4_4.4.6-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libc6-dev-sparc64_2.13-4 libc6-sparc64_2.13-4 libcairo2_1.10.2-6 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9+b1 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15+b1 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sat May 14 14:01:04 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
+dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-biobase
+dpkg-buildpackage: source version 2.12.1-1
+ dpkg-source --before-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: host architecture sparc
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'Biobase' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/src'
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/src'
+installing to /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (Biobase)
+rm -vf /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-biobase.substvars
+dh_installdirs -pr-bioc-biobase
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+dh_installdocs -pr-bioc-biobase ./NEWS
+dh_installexamples -pr-bioc-biobase
+dh_installman -pr-bioc-biobase
+dh_installinfo -pr-bioc-biobase
+dh_installmenu -pr-bioc-biobase
+dh_installcron -pr-bioc-biobase
+dh_installinit -pr-bioc-biobase
+dh_installdebconf -pr-bioc-biobase
+dh_installemacsen -pr-bioc-biobase
+dh_installcatalogs -pr-bioc-biobase
+dh_installpam -pr-bioc-biobase
+dh_installlogrotate -pr-bioc-biobase
+dh_installlogcheck -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
+dh_installchangelogs -pr-bioc-biobase
+dh_installudev -pr-bioc-biobase
+dh_lintian -pr-bioc-biobase
+dh_bugfiles -pr-bioc-biobase
+dh_install -pr-bioc-biobase
+dh_link -pr-bioc-biobase
+dh_installmime -pr-bioc-biobase
+dh_strip -pr-bioc-biobase
+dh_compress -pr-bioc-biobase
+dh_fixperms -pr-bioc-biobase
+dh_makeshlibs -pr-bioc-biobase
+dh_installdeb -pr-bioc-biobase
+dh_perl -pr-bioc-biobase
+dh_shlibdeps -pr-bioc-biobase
+dh_gencontrol -pr-bioc-biobase
+dh_md5sums -pr-bioc-biobase
+dh_builddeb -pr-bioc-biobase
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../r-bioc-biobase_2.12.1-1_sparc.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-biobase-2.12.1
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110515-1749
+
+r-bioc-biobase_2.12.1-1_sparc.changes:
+Format: 1.8
+Date: Sat, 14 May 2011 22:35:11 +0900
+Source: r-bioc-biobase
+Binary: r-bioc-biobase
+Architecture: sparc
+Version: 2.12.1-1
+Distribution: sid
+Urgency: low
+Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-biobase - base functions for Bioconductor
+Closes: 169859
+Changes:
+ r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ .
+ * Initial release (Closes: #169859)
+Checksums-Sha1:
+ b2abf192f70336360483972edcca84e9a6910671 2670816 r-bioc-biobase_2.12.1-1_sparc.deb
+Checksums-Sha256:
+ ddd91cce3b2f089688dd0b26f640278539154ad534f114fcd1d757ac8e9bb989 2670816 r-bioc-biobase_2.12.1-1_sparc.deb
+Files:
+ 78f3d92383476aae334a3492d1c7c110 2670816 gnu-r optional r-bioc-biobase_2.12.1-1_sparc.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-biobase_2.12.1-1_sparc.deb
+─────────────────────────────────
+
+ new debian package, version 2.0.
+ size 2670816 bytes: control archive= 4892 bytes.
+ 1187 bytes, 25 lines control
+ 13326 bytes, 141 lines md5sums
+ Package: r-bioc-biobase
+ Version: 2.12.1-1
+ Architecture: sparc
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 3736
+ Depends: libc6 (>= 2.6), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org
+ Description: base functions for Bioconductor
+ Biobase is part of the Bioconductor project, and is used by many other
+ packages. Biobase contains standardized data structures to represent genomic
+ data, and functions that are needed by many other packages or which replace R
+ functions.
+ .
+ Bioconductor is a project to develop innovative software tools for use in
+ computational biology. It is based on the R language. You should already be
+ quite familiar with R before using Bioconductor. Bioconductor packages provide
+ flexible interactive tools for carrying out a number of different computational
+ tasks.
+ .
+ Most other Bioconductor packages are not packaged for Debian, but this
+ packages provides in its Debian documentation instructions on how to install
+ unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
+ that are prepared by members of the Debian Med team.
+
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/share/
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 10569 2011-05-15 17:48 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 392 2011-05-15 17:48 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 158 2011-05-15 17:48 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 1380 2011-04-15 04:11 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+drwxr-xr-x root/root 0 2011-05-15 17:48 ./usr/lib/
+drwxr-xr-x root/root 0 2011-05-15 17:48 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/
+-rw-r--r-- root/root 6600 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/INDEX
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+-rw-r--r-- root/root 180 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 212 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
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+-rw-r--r-- root/root 1179 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/html/R.css
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+-rw-r--r-- root/root 715 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+-rw-r--r-- root/root 109039 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+-rw-r--r-- root/root 2870 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/NAMESPACE
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 14396 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 241402 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 852 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 3320 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+-rw-r--r-- root/root 1984 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 516 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/doc/
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+-rw-r--r-- root/root 1515 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 951 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 5015 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 2040 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 477 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 650 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/CITATION
+drwxr-xr-x root/root 0 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 5365 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 1213 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 774 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 1122 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 6808 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 2008 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+drwxr-xr-x root/root 0 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 18892 2011-05-15 17:49 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 28463 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/seD.rda
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+-rw-r--r-- root/root 25217 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 40 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.rda
+-rw-r--r-- root/root 40 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.rda
+-rw-r--r-- root/root 609 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/aaMap.rda
+-rw-r--r-- root/root 61627 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/geneData.rda
+-rw-r--r-- root/root 40 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/sample.eSet.rda
+-rw-r--r-- root/root 2032 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 225 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/geneCov.rda
+-rw-r--r-- root/root 277973 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 1265 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/Code/
+drwxr-xr-x root/root 0 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 350 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 487 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+-rw-r--r-- root/root 201 2011-05-15 17:48 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-b15976bc-9821-4b04-acf0-6a6b2d63a002/build/buildd-r-bioc-biobase_2.12.1-1-sparc-H2Br9P
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: sparc
+Build-Space: 9976
+Build-Time: 72
+Distribution: sid
+Install-Time: 181
+Job: r-bioc-biobase_2.12.1-1
+Package: r-bioc-biobase
+Package-Time: 302
+Source-Version: 2.12.1-1
+Space: 9976
+Status: successful
+Version: 2.12.1-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110515-1749
+Build needed 00:05:02, 9976k disc space
+Signature with key '9BBB678A' requested:
--
base functions for Bioconductor
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