[med-svn] [SCM] r-bioc-biobase branch, meta, updated. 40246d97c2e10ffed0e805a081a03f9d380ff24c
Charles Plessy
plessy at debian.org
Thu Aug 4 00:19:52 UTC 2011
The following commit has been merged in the meta branch:
commit 40246d97c2e10ffed0e805a081a03f9d380ff24c
Author: Charles Plessy <plessy at debian.org>
Date: Thu Aug 4 09:18:05 2011 +0900
Built and uploaded r-bioc-biobase_2.12.2-1.
diff --git a/amd64.changes b/amd64.changes
index ec74685..4a0bd70 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,52 +2,51 @@
Hash: SHA256
Format: 1.8
-Date: Sat, 14 May 2011 22:35:11 +0900
+Date: Thu, 04 Aug 2011 08:58:03 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: source amd64
-Version: 2.12.1-1
+Version: 2.12.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
-Closes: 169859
Changes:
- r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ r-bioc-biobase (2.12.2-1) unstable; urgency=low
.
- * Initial release (Closes: #169859)
+ * New upstream release.
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diff --git a/amd64.log b/amd64.log
index 1d8080a..2ae2244 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,17 +1,18 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on aqwa.igloo
+sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.1-1 (amd64) 14 mai 2011 22:52 ║
+║ r-bioc-biobase 2.12.2-1 (amd64) 04 août 2011 09:09 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.1-1
-Source Version: 2.12.1-1
+Version: 2.12.2-1
+Source Version: 2.12.2-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-Pv5C1p' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-b4fe8806-f9a3-4be9-b079-01db89bc8a53' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-mh84sH/r-bioc-biobase-2.12.2' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-mh84sH' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-6916a6a9-d5b0-46c0-a15e-58ff0d3a31c8' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
@@ -36,14 +37,14 @@ Reading state information...
Local sources
─────────────
-r-bioc-biobase_2.12.1-1.dsc exists in .; copying to chroot
+r-bioc-biobase_2.12.2-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-dJHRTB/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-2I4rqF/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -55,22 +56,19 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/702 B of archives.
+Need to get 0 B/716 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 12450 files and directories currently installed.)
+(Reading database ... 10847 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
-dpkg-deb: building package `sbuild-build-depends-r-bioc-biobase-dummy' in `/«BUILDDIR»/resolver-3lDxGo/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-r-bioc-biobase-dummy' in `/«BUILDDIR»/resolver-d9HHHw/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'.
OK
Reading package lists...
@@ -82,15 +80,12 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -114,7 +109,7 @@ The following NEW packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -122,73 +117,92 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev sbuild-build-depends-r-bioc-biobase-dummy tcl8.5
tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
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+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_amd64.deb) ...
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+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_amd64.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_amd64.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_amd64.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_amd64.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_amd64.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_amd64.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_amd64.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_amd64.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_amd64.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_amd64.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 12450 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_amd64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
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-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
Selecting previously deselected package libunistring0.
@@ -200,85 +214,37 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_amd64.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_amd64.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_amd64.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-7_amd64.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-7_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-5_amd64.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_amd64.deb) ...
Selecting previously deselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
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Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
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Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_amd64.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_amd64.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_amd64.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_amd64.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_amd64.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_amd64.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_amd64.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_amd64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_amd64.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_amd64.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_amd64.deb) ...
Selecting previously deselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
Selecting previously deselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_amd64.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24_amd64.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
Selecting previously deselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
Selecting previously deselected package libpcre3-dev.
@@ -286,132 +252,127 @@ Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_amd64.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-1_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_amd64.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-1_amd64.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_amd64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_amd64.deb) ...
Selecting previously deselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_amd64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_amd64.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_amd64.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_amd64.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_amd64.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_amd64.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-1_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
Selecting previously deselected package sbuild-build-depends-r-bioc-biobase-dummy.
Unpacking sbuild-build-depends-r-bioc-biobase-dummy (from .../sbuild-build-depends-r-bioc-biobase-dummy.deb) ...
-Setting up bsdmainutils (8.2.2) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-2) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-5) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-1) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.93) ...
+Setting up debhelper (8.9.3) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-7) ...
-Setting up gfortran-4.6 (4.6.0-7) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-5) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
-Setting up libpaper1 (1.1.24) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24) ...
+Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcrecpp0 (8.12-3) ...
Setting up libpcre3-dev (8.12-3) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
-Setting up libreadline6-dev (6.2-1) ...
-Setting up libreadline-dev (6.2-1) ...
-Setting up libsm6 (2:1.2.0-1) ...
+Setting up libpng12-dev (1.2.46-3) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-1) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-1) ...
+Setting up r-base-dev (2.13.1-1) ...
Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -419,8 +380,8 @@ Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ...
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-7 gcc-4.4_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.6_4.6.0-7 libc6-dev_2.13-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-5
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-3 cpp-4.5_4.5.3-1 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.5 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libgfortran3_4.6.0-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c2_0.10.2-9 libppl-c4_0.11.2-3 libppl7_0.10.2-9 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline-dev_6.2-1 libreadline6_6.2-1 libreadline6-dev_6.2-1 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-7 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-1 r-base-dev_2.13.0-1 readline-common_6.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110729-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6-dev_2.13-13 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110729-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-13 libc-dev-bin_2.13-13 libc6_2.13-13 libc6-dev_2.13-13 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-2 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-5 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-13 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -430,19 +391,34 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 14 13:35:55 2011 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.1-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.1
-dpkg-source: info: unpacking r-bioc-biobase_2.12.1.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.1-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-biobase_2.12.2-1.dsc)
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
+dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
Check disc space
────────────────
Sufficient free space for build
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=charles
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_CHROOT_NAME=sid-amd64-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1000
+SCHROOT_GROUP=charles
+SCHROOT_SESSION_ID=sid-amd64-sbuild-6916a6a9-d5b0-46c0-a15e-58ff0d3a31c8
+SCHROOT_UID=1000
+SCHROOT_USER=charles
+SHELL=/bin/sh
+TERM=xterm
+USER=charles
+USERNAME=charles
+
dpkg-buildpackage
─────────────────
@@ -452,9 +428,9 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.1-1
+dpkg-buildpackage: source version 2.12.2-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-biobase-2.12.1
+ dpkg-source --before-build r-bioc-biobase-2.12.2
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -462,9 +438,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -480,21 +456,21 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-biobase-2.12.1
+ dpkg-source -b r-bioc-biobase-2.12.2
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-biobase using existing r-bioc-biobase_2.12.1.orig.tar.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.1-1.diff.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.1-1.dsc
+dpkg-source: info: building r-bioc-biobase using existing r-bioc-biobase_2.12.2.orig.tar.gz
+dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.12.2-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -502,9 +478,9 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -514,16 +490,16 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
+make[1]: Entering directory `/«PKGBUILDDIR»/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
@@ -531,10 +507,10 @@ gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-biobase-2.12.1/src'
-installing to /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Leaving directory `/«PKGBUILDDIR»/src'
+make[1]: Entering directory `/«PKGBUILDDIR»/src'
+make[1]: Leaving directory `/«PKGBUILDDIR»/src'
+installing to /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -545,17 +521,17 @@ installing to /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-biobase-2.12.1/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -569,7 +545,6 @@ dh_installcatalogs -pr-bioc-biobase
dh_installpam -pr-bioc-biobase
dh_installlogrotate -pr-bioc-biobase
dh_installlogcheck -pr-bioc-biobase
-dh_installgsettings -pr-bioc-biobase
dh_installchangelogs -pr-bioc-biobase
dh_installudev -pr-bioc-biobase
dh_lintian -pr-bioc-biobase
@@ -577,6 +552,7 @@ dh_bugfiles -pr-bioc-biobase
dh_install -pr-bioc-biobase
dh_link -pr-bioc-biobase
dh_installmime -pr-bioc-biobase
+dh_installgsettings -pr-bioc-biobase
dh_strip -pr-bioc-biobase
dh_compress -pr-bioc-biobase
dh_fixperms -pr-bioc-biobase
@@ -587,13 +563,13 @@ dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.1-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-biobase_2.12.1-1_amd64.changes
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_amd64.deb'.
+ dpkg-genchanges >../r-bioc-biobase_2.12.2-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-biobase-2.12.1
+ dpkg-source --after-build r-bioc-biobase-2.12.2
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110514-2255
+Build finished at 20110804-0910
Finished
────────
@@ -605,60 +581,59 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.1-1_amd64.changes:
+r-bioc-biobase_2.12.2-1_amd64.changes:
──────────────────────────────────────
Format: 1.8
-Date: Sat, 14 May 2011 22:35:11 +0900
+Date: Thu, 04 Aug 2011 08:58:03 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: source amd64
-Version: 2.12.1-1
+Version: 2.12.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
-Closes: 169859
Changes:
- r-bioc-biobase (2.12.1-1) unstable; urgency=low
+ r-bioc-biobase (2.12.2-1) unstable; urgency=low
.
- * Initial release (Closes: #169859)
+ * New upstream release.
Checksums-Sha1:
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- f027d203820d485d6edab7740e0f2b3404bad3e2 5336 r-bioc-biobase_2.12.1-1.diff.gz
- 2bcc524ff3a4c74c9a3af4029035f9c5d0428ec2 2672936 r-bioc-biobase_2.12.1-1_amd64.deb
+ 7fa9dc896220a5429c51a37cd7844a0d2a075f7e 1058 r-bioc-biobase_2.12.2-1.dsc
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+ 89e10158d24b458c4d4069949b493fd4b3f5331a 2667938 r-bioc-biobase_2.12.2-1_amd64.deb
Checksums-Sha256:
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- 8d16adb779c63228fee029a1d410b8906cae6dd9876a40958f13f469aaf9e608 2222976 r-bioc-biobase_2.12.1.orig.tar.gz
- b50070598aa0c88ab55fd8e423c5955575fadcf48c30a1275c774240cb353cdd 5336 r-bioc-biobase_2.12.1-1.diff.gz
- f52f09d82ce272b5a6c1216813cc328ef264f759ac22b9630cf8368df8e0d927 2672936 r-bioc-biobase_2.12.1-1_amd64.deb
+ ac483238487c7534efbd6d557b881a2d2bc86c4128abdee1660c440d698a1be2 1058 r-bioc-biobase_2.12.2-1.dsc
+ 34efe354d34268e12c335fae538af4507a13a24a62a08c066fda4319bf5fd97c 2221612 r-bioc-biobase_2.12.2.orig.tar.gz
+ cfa56d4ef2d1d80a8375e8f4e9851f0a7230361e445a240b467578d0c794692d 5417 r-bioc-biobase_2.12.2-1.diff.gz
+ e10279c9c7755d9f548d5785922aa31d16f07a2c00a4e7ca90c0adca44b21ebd 2667938 r-bioc-biobase_2.12.2-1_amd64.deb
Files:
- 1c9c80465edcc7e4cd20e0e8eb6479e5 1058 gnu-r optional r-bioc-biobase_2.12.1-1.dsc
- 893dc8abd60e3cebae58a000ffb15288 2222976 gnu-r optional r-bioc-biobase_2.12.1.orig.tar.gz
- 8ce50984d1b64d94ecbec9646ff5821b 5336 gnu-r optional r-bioc-biobase_2.12.1-1.diff.gz
- d5fe23272e247c9bd3debf0caf6e08e1 2672936 gnu-r optional r-bioc-biobase_2.12.1-1_amd64.deb
+ 11fa13e44209fd7130c50aa52497c244 1058 gnu-r optional r-bioc-biobase_2.12.2-1.dsc
+ 19d3ae1ccd63f428f3b118c6150f4983 2221612 gnu-r optional r-bioc-biobase_2.12.2.orig.tar.gz
+ ab1f805e3261f9f2e8788a9630b85d3e 5417 gnu-r optional r-bioc-biobase_2.12.2-1.diff.gz
+ fe3a5776523f7006aa0a1452479fec56 2667938 gnu-r optional r-bioc-biobase_2.12.2-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.1-1_amd64.deb
+r-bioc-biobase_2.12.2-1_amd64.deb
─────────────────────────────────
new debian package, version 2.0.
- size 2672936 bytes: control archive= 4890 bytes.
+ size 2667938 bytes: control archive= 4938 bytes.
1187 bytes, 25 lines control
- 13326 bytes, 141 lines md5sums
+ 13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.1-1
+ Version: 2.12.2-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3740
- Depends: libc6 (>= 2.3), r-base-core (>= 2.13.0~)
+ Installed-Size: 3796
+ Depends: libc6 (>= 2.3), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -679,177 +654,177 @@ r-bioc-biobase_2.12.1-1_amd64.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/
-drwxr-xr-x root/root 0 2011-05-14 22:54 ./usr/lib/
-drwxr-xr-x root/root 0 2011-05-14 22:54 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/R/
--rw-r--r-- root/root 91 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
--rw-r--r-- root/root 201 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/
--rw-r--r-- root/root 487 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
--rw-r--r-- root/root 350 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
--rw-r--r-- root/root 3988 2011-05-14 22:54 ./usr/lib/R/site-library/Biobase/NEWS
--rw-r--r-- root/root 516 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/testClass.R
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 774 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 2008 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
--rw-r--r-- root/root 1213 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 5365 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 6808 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 1122 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/
--rw-r--r-- root/root 109039 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
--rw-r--r-- root/root 715 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 361987 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8695 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/
--rw-r--r-- root/root 212 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 5635 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 1022 2011-05-14 22:54 ./usr/lib/R/site-library/Biobase/Meta/package.rds
--rw-r--r-- root/root 5631 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 475 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
--rw-r--r-- root/root 3432 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 1357 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
--rw-r--r-- root/root 322 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/Meta/data.rds
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 21992 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 14396 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/help/AnIndex
--rw-r--r-- root/root 239201 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 3320 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 827 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 1990 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 6600 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/INDEX
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 76888 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
--rw-r--r-- root/root 267594 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 3067 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
--rw-r--r-- root/root 3727 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
--rw-r--r-- root/root 7621 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 169 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/legacy/
--rw-r--r-- root/root 13630 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
--rw-r--r-- root/root 162 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
--rw-r--r-- root/root 79073 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
--rw-r--r-- root/root 8632 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
--rw-r--r-- root/root 5030 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
--rw-r--r-- root/root 1653 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/esApply.R
--rw-r--r-- root/root 28377 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
--rw-r--r-- root/root 3048 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 4080 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 1426 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/index.html
--rw-r--r-- root/root 197873 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
--rw-r--r-- root/root 60321 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 18067 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 110287 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/
--rw-r--r-- root/root 345999 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/SW.rda
--rw-r--r-- root/root 609 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/aaMap.rda
--rw-r--r-- root/root 28463 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/seD.rda
--rw-r--r-- root/root 40 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.rda
--rw-r--r-- root/root 435 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
--rw-r--r-- root/root 2032 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/reporter.rda
--rw-r--r-- root/root 277973 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
--rw-r--r-- root/root 40 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.rda
--rw-r--r-- root/root 25217 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
--rw-r--r-- root/root 225 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/geneCov.rda
--rw-r--r-- root/root 40 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/sample.eSet.rda
--rw-r--r-- root/root 61627 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/data/geneData.rda
--rw-r--r-- root/root 1261 2011-05-14 22:54 ./usr/lib/R/site-library/Biobase/DESCRIPTION
--rw-r--r-- root/root 2870 2011-05-14 22:54 ./usr/lib/R/site-library/Biobase/NAMESPACE
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/html/
--rw-r--r-- root/root 1179 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/html/R.css
--rw-r--r-- root/root 51239 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/html/00Index.html
--rw-r--r-- root/root 650 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/CITATION
-drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/UnitTests/
--rw-r--r-- root/root 580 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
--rw-r--r-- root/root 5015 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
--rw-r--r-- root/root 1257 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
--rwxr-xr-x root/root 213 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
--rw-r--r-- root/root 629 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
--rw-r--r-- root/root 4598 2011-05-14 22:55 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
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+-rwxr-xr-x root/root 39 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 2096 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+-rw-r--r-- root/root 1515 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 6194 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 180 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 8317 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
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+drwxr-xr-x root/root 0 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 110 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 146 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+-rw-r--r-- root/root 4705 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+-rw-r--r-- root/root 143 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 1014 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 998 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+-rw-r--r-- root/root 4822 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 105 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 795 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 113 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+-rw-r--r-- root/root 227 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 555 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 183 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 609 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+drwxr-xr-x root/root 0 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
+-rw-r--r-- root/root 6194 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 705 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+-rw-r--r-- root/root 423 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+drwxr-xr-x root/root 0 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 4588 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 939 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 943 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 4678 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 741 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+drwxr-xr-x root/root 0 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 524 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 112 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
+-rw-r--r-- root/root 62201 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 92336 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 76485 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 146 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 4704 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+-rw-r--r-- root/root 143 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 1016 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 95238 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 5537 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 62219 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 105 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 795 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 802 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 113 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 231 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 25005 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
+-rw-r--r-- root/root 1166 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 183 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 167662 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 1235 2011-08-04 09:10 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+drwxr-xr-x root/root 0 2011-08-04 09:10 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-04 09:10 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-04 09:10 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1380 2011-07-02 01:14 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 392 2011-08-04 09:09 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10574 2011-08-04 09:09 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 203 2011-08-04 09:09 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -857,30 +832,33 @@ drwxr-xr-x root/root 0 2011-05-14 22:55 ./usr/share/doc/r-bioc-biobase/
└──────────────────────────────────────────────────────────────────────────────┘
+lintian
+───────
+
+W: r-bioc-biobase source: unused-build-dependency-on-cdbs
+I: r-bioc-biobase source: missing-debian-source-format
+P: r-bioc-biobase: no-upstream-changelog
+
+I: Lintian run was successful.
+
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.5 libstdc++6-4.5-dev libppl-c2
-Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
+ libglib2.0-0* libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev*
liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
@@ -890,17 +868,17 @@ The following packages will be REMOVED:
r-base-dev* sbuild-build-depends-core-dummy*
sbuild-build-depends-r-bioc-biobase-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded.
-After this operation, 131 MB disk space will be freed.
-(Reading database ... 16396 files and directories currently installed.)
+0 upgraded, 0 newly installed, 78 to remove and 0 not upgraded.
+After this operation, 132 MB disk space will be freed.
+(Reading database ... 14802 files and directories currently installed.)
Removing sbuild-build-depends-r-bioc-biobase-dummy ...
+Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
Removing man-db ...
Purging configuration files for man-db ...
Removing bsdmainutils ...
Purging configuration files for bsdmainutils ...
-Removing r-base-dev ...
Removing dpatch ...
Purging configuration files for dpatch ...
Removing file ...
@@ -959,8 +937,9 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
Removing libjpeg62 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libreadline-dev ...
@@ -1026,17 +1005,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 12168
-Build-Time: 23
+Build-Space: 12272
+Build-Time: 19
Distribution: unstable
-Install-Time: 111
-Job: r-bioc-biobase_2.12.1-1.dsc
+Install-Time: 22
+Job: r-bioc-biobase_2.12.2-1.dsc
+Lintian: pass
Package: r-bioc-biobase
-Package-Time: 138
-Source-Version: 2.12.1-1
-Space: 12168
+Package-Time: 44
+Source-Version: 2.12.2-1
+Space: 12272
Status: successful
-Version: 2.12.1-1
+Version: 2.12.2-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110514-2255
-Build needed 00:02:18, 12168k disc space
+Finished at 20110804-0910
+Build needed 00:00:44, 12272k disc space
diff --git a/dsc b/dsc
index 1285a02..94cd2af 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 1.0
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: any
-Version: 2.12.1-1
+Version: 2.12.2-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
@@ -15,29 +15,29 @@ Vcs-Browser: http://git.debian.org/?p=debian-med/r-bioc-biobase.git
Vcs-Git: git://git.debian.org/git/debian-med/r-bioc-biobase.git
Build-Depends: cdbs, debhelper (>= 8), r-base-dev
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+ e04af31e0c5625782b2310409dceedb7035e78a7 2221612 r-bioc-biobase_2.12.2.orig.tar.gz
+ e4e05aeb8ca8959374106a799f2ce1a983778978 5417 r-bioc-biobase_2.12.2-1.diff.gz
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- b50070598aa0c88ab55fd8e423c5955575fadcf48c30a1275c774240cb353cdd 5336 r-bioc-biobase_2.12.1-1.diff.gz
+ 34efe354d34268e12c335fae538af4507a13a24a62a08c066fda4319bf5fd97c 2221612 r-bioc-biobase_2.12.2.orig.tar.gz
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- 8ce50984d1b64d94ecbec9646ff5821b 5336 r-bioc-biobase_2.12.1-1.diff.gz
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--
base functions for Bioconductor
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