[med-svn] [SCM] r-bioc-limma branch, meta, updated. 13af14a466570b114e36629d02dfd355a217d88f
Charles Plessy
plessy at debian.org
Sun Aug 14 12:01:51 UTC 2011
The following commit has been merged in the meta branch:
commit ac1526dc42968cb32fa868928a812c953f743f18
Author: Charles Plessy <plessy at debian.org>
Date: Sun Aug 14 20:39:26 2011 +0900
Collected build logs for 3.8.2-1
diff --git a/armel.log b/armel.log
new file mode 100644
index 0000000..bb65a52
--- /dev/null
+++ b/armel.log
@@ -0,0 +1,904 @@
+From buildd at antheil.debian.org Thu Jun 02 15:54:53 2011
+Return-path: <buildd at antheil.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
+ id 1QSAEX-0001M9-1w
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 15:54:53 +0000
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+ helo=antheil.debian.org)
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+ CN=antheil.debian.org, EMAIL=hostmaster at antheil.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
+ id 1QSAEV-0000QW-W0
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 15:54:52 +0000
+Received: from buildd by antheil.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at antheil.debian.org>)
+ id 1QSAEU-0006pb-I0; Thu, 02 Jun 2011 15:54:50 +0000
+From: buildd on antheil <buildd at antheil.debian.org>
+To: buildd-porters at antheil.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on armel (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QSAEU-0006pb-I0 at antheil.debian.org>
+Date: Thu, 02 Jun 2011 15:54:50 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on antheil.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (armel) 02 Jun 2011 15:46 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Source Version: 3.8.2-1
+Architecture: armel
+Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [5270 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org Release [1604 B]
+Get:6 http://incoming.debian.org unstable/main Sources [5270 kB]
+Get:7 http://ftp.uk.debian.org unstable/contrib Sources [49.7 kB]
+Get:8 http://ftp.uk.debian.org unstable/non-free Sources [92.2 kB]
+Get:9 http://ftp.uk.debian.org unstable/main armel Packages [7192 kB]
+Get:10 http://ftp.uk.debian.org unstable/contrib armel Packages [53.8 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:11 http://ftp.uk.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://ftp.uk.debian.org unstable/contrib Translation-en
+Get:12 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
+Get:14 http://incoming.debian.org unstable/main armel Packages [7192 kB]
+Get:15 http://incoming.debian.org unstable/contrib armel Packages [53.8 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:17 http://incoming.debian.org Sources [36.8 kB]
+Get:18 http://incoming.debian.org Packages [370 kB]
+Ign http://incoming.debian.org Translation-en
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Fetched 26.0 MB in 57s (451 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 1s (781 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.2)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-2)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
+ libgomp1-dbg libquadmath-dbg libmudflap0-dbg binutils-gold gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libreadline6
+ libstdc++6 libstdc++6-4.6-dev
+9 upgraded, 75 newly installed, 0 to remove and 31 not upgraded.
+Need to get 62.8 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libreadline6 armel 6.2-2 [145 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.0-10 [28.3 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.0-10 [130 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.0-10 [296 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.0-10 [4303 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.0-10 [1707 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.0-10 [5204 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.0-10 [4556 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.0-10 [24.6 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.2 [205 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-5 [1077 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-2 [33.7 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-1 [989 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.04-5+b1 [235 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.04-5+b1 [49.4 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-3 [129 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-3 [258 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-2+b1 [821 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.6-1 [1535 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-1 [113 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-4 [409 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-3 [1981 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7 [118 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.4-1 [375 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-2.2 [273 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-2.2 [334 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.0-10 [255 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.0-10 [4924 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.0-5 [1126 B]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2-8 [268 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2-8 [290 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-6 [34.6 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.21.8-1 [383 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.44-2 [173 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-1 [15.9 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-1 [21.5 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-2 [40.1 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.3-1 [834 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-2 [15.1 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-2 [9358 B]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-1 [30.4 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6 [921 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-2 [24.6 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-1 [50.2 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 armel 6b1-1 [90.1 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62-dev armel 6b1-1 [195 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.0-4 [2146 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.0-4 [2348 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-1 [474 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-1 [40.0 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-2 [55.0 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.28.3-6 [411 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-3 [112 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-3 [301 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.44-2 [262 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-2 [237 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-2 [880 B]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-1 [28.1 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-1 [191 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-1 [45.8 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-1 [16.0 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-1 [179 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-3 [331 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-4 [191 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.9-2 [1562 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.9-2 [1138 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.13.0-2 [14.9 MB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 62.8 MB in 19s (3171 kB/s)
+(Reading database ... 10482 files and directories currently installed.)
+Preparing to replace libreadline6 6.2-1 (using .../libreadline6_6.2-2_armel.deb) ...
+Unpacking replacement libreadline6 ...
+Setting up libreadline6 (6.2-2) ...
+(Reading database ... 10482 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-10_armel.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-10_armel.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-10) ...
+(Reading database ... 10481 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-10_armel.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-10) ...
+(Reading database ... 10481 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-10_armel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-10_armel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-10_armel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-10_armel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-10_armel.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-10) ...
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10481 files and directories currently installed.)
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+Moving old data out of the way
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+Selecting previously deselected package intltool-debian.
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+Selecting previously deselected package libfreetype6.
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+Selecting previously deselected package libfontconfig1.
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+Selecting previously deselected package fontconfig.
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+Selecting previously deselected package gfortran-4.6.
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+Selecting previously deselected package libbz2-dev.
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+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_armel.deb) ...
+Selecting previously deselected package liblapack3gf.
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+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_armel.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_armel.deb) ...
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+Selecting previously deselected package libpcre3-dev.
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+Selecting previously deselected package libreadline-dev.
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+Selecting previously deselected package xdg-utils.
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+Selecting previously deselected package tcl8.5.
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+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_armel.deb) ...
+Selecting previously deselected package r-base-core.
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+Selecting previously deselected package r-base-dev.
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+Setting up cpp-4.6 (4.6.0-10) ...
+Setting up gcc-4.6 (4.6.0-10) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-2) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-10) ...
+Setting up gfortran-4.6 (4.6.0-10) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Setting up libstdc++6-4.6-dev (4.6.0-10) ...
+Setting up g++-4.6 (4.6.0-10) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 31 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32 armel (armv5tel)
+Toolchain package versions: binutils_2.21.51.20110421-3 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-2 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-3
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture armel
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+ fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org> >../r-bioc-limma_3.8.2-1_armel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110602-1554
+
+r-bioc-limma_3.8.2-1_armel.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: armel
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: armel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ 8cd3fb1ae4594eea38224cdabf4c77da6b61bd27 1399796 r-bioc-limma_3.8.2-1_armel.deb
+Checksums-Sha256:
+ 1f89b4c87efc92812cee7102ceae8f50c2dae26f220bbeeba881b310f418a869 1399796 r-bioc-limma_3.8.2-1_armel.deb
+Files:
+ 6c78af221c2bd98b5e57b7f6b739ccfc 1399796 gnu-r optional r-bioc-limma_3.8.2-1_armel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_armel.deb
+──────────────────────────────
+
+ new debian package, version 2.0.
+ size 1399796 bytes: control archive= 1509 bytes.
+ 767 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: armel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1680
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-02 15:52 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2116 2011-06-02 15:52 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1342 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3249 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2361 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 449794 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1011 2011-06-02 15:53 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 9360 2011-06-02 15:54 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-02 15:53 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-02 15:53 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 5946 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1054 2011-06-02 15:53 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 2853 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5522 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 217 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 687780 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 84633 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 1230 2011-06-02 15:53 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3735 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 172730 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1872 2011-06-02 15:53 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 13848 2011-06-02 15:54 ./usr/lib/R/site-library/limma/libs/limma.so
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-armel-sbuild-0b4fe5cf-4dba-4da4-b2a9-71961bf7b013/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: armel
+Build-Space: 5084
+Build-Time: 125
+Distribution: sid
+Install-Time: 304
+Job: r-bioc-limma_3.8.2-1
+Package: r-bioc-limma
+Package-Time: 521
+Source-Version: 3.8.2-1
+Space: 5084
+Status: successful
+Version: 3.8.2-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110602-1554
+Build needed 00:08:41, 5084k disc space
+Signature with key '5C622921' requested:
+
diff --git a/hurd-i386.log b/hurd-i386.log
new file mode 100644
index 0000000..7682d3d
--- /dev/null
+++ b/hurd-i386.log
@@ -0,0 +1,775 @@
+From buildd at rossini.debian.net Fri Jun 03 11:35:02 2011
+Return-path: <buildd at rossini.debian.net>
+Received: from io.ethz.ch ([129.132.80.17] helo=io.debian.net)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
+ id 1QSSea-0001w2-TQ
+ for logs at buildd.debian.org; Fri, 03 Jun 2011 11:35:02 +0000
+Received: from hurd.ethz.ch ([192.33.98.55] helo=rossini.debian.net)
+ by io.debian.net with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
+ id 1QSSeY-000Coe-F7; Fri, 03 Jun 2011 13:34:58 +0200
+Received: from buildd by rossini.debian.net with local (Exim 4.72)
+ (envelope-from <buildd at rossini.debian.net>)
+ id 1QSSeT-0002In-52; Fri, 03 Jun 2011 11:34:53 +0000
+Date: Fri, 03 Jun 2011 11:34:53 +0000
+Message-Id: <E1QSSeT-0002In-52 at rossini.debian.net>
+From: Build Daemon <buildd at rossini.debian.net>
+To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at buildd.debian-ports.org,
+ logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on hurd-i386
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on rossini.debian.net
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (hurd-i386) 03 Jun 2011 11:09 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Architecture: hurd-i386
+Chroot Build Dir: /home/buildd/build/chroot-sid/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw
+Start Time: 20110603-1109
+Ign file: ./ InRelease
+Ign file: ./ Release.gpg
+Ign file: ./ Release
+Ign file: ./ Translation-en
+Hit http://ftp.ch.debian.org unstable InRelease
+Hit http://ftp.ch.debian.org experimental InRelease
+Ign http://ftp.debian-ports.org unreleased InRelease
+Hit http://ftp.ch.debian.org unstable/main Sources/DiffIndex
+Hit http://ftp.debian-ports.org unreleased Release.gpg
+Ign http://incoming.debian.org InRelease
+Hit http://ftp.ch.debian.org unstable/contrib Sources/DiffIndex
+Hit http://ftp.ch.debian.org unstable/non-free Sources/DiffIndex
+Hit http://ftp.ch.debian.org unstable/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.ch.debian.org unstable/main TranslationIndex
+Hit http://ftp.ch.debian.org experimental/main Sources/DiffIndex
+Hit http://ftp.ch.debian.org experimental/contrib Sources/DiffIndex
+Hit http://ftp.ch.debian.org experimental/non-free Sources/DiffIndex
+Hit http://ftp.debian-ports.org unreleased Release
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org Release
+Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
+Hit http://incoming.debian.org Sources
+Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org Translation-en
+Ign http://ftp.debian-ports.org unreleased/main Translation-en
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://ftp.ch.debian.org/debian/ unstable/main r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://ftp.ch.debian.org/debian/ unstable/main r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://ftp.ch.debian.org/debian/ unstable/main r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 0s (938 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+** Using build dependencies supplied by package:
+Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Checking for already installed source dependencies...
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for source dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libboost-iostreams1.42.0
+Use 'apt-get autoremove' to remove them.
+The following extra packages will be installed:
+ dpatch file fontconfig fontconfig-config gettext gettext-base html2text
+ intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3
+ libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0 libice6
+ libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ devscripts dh-make curl defoma gettext-doc ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libmail-box-perl ess r-doc-info r-doc-pdf r-mathlib
+ r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0
+ libice6 libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf libmagic1
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
+ libpcrecpp0 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 66 newly installed, 0 to remove and 2 not upgraded.
+Need to get 0 B/40.6 MB of archives.
+After this operation, 98.2 MB of additional disk space will be used.
+WARNING: The following packages cannot be authenticated!
+ libmagic1 file gettext-base libxml2 ucf html2text libglib2.0-0 libcroco3
+ libexpat1 libunistring0 gettext intltool-debian po-debconf debhelper cdbs
+ dpatch libfreetype6 ttf-dejavu-core fontconfig-config libfontconfig1
+ fontconfig libblas3gf libblas-dev libbz2-dev libpixman-1-0 libxau6 libxdmcp6
+ libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1
+ libcairo2 libdatrie1 x11-common libice6 libjpeg62 libjpeg62-dev liblapack3gf
+ liblapack-dev libncurses5-dev libthai-data libthai0 libxft2 libpango1.0-0
+ libpaper1 libpaper-utils libpcrecpp0 libpcre3-dev zlib1g-dev libpng12-dev
+ libreadline6-dev libreadline-dev libsm6 libtiff4 libxext6 libxss1 libxt6 zip
+ unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev
+
+Extracting templates from packages: 45%
+Extracting templates from packages: 90%
+Extracting templates from packages: 100%
+Preconfiguring packages ...
+Authentication warning overridden.
+Selecting previously deselected package libmagic1.
+(Reading database ... 13526 files and directories currently installed.)
+Unpacking libmagic1 (from .../libmagic1_5.03-5+b1_hurd-i386.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.03-5+b1_hurd-i386.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_hurd-i386.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_hurd-i386.deb) ...
+Selecting previously deselected package ucf.
+Moving old data out of the way
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_hurd-i386.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_hurd-i386.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_hurd-i386.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_hurd-i386.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_hurd-i386.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_hurd-i386.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_hurd-i386.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_hurd-i386.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_hurd-i386.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_hurd-i386.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_hurd-i386.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_hurd-i386.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_hurd-i386.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_hurd-i386.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_hurd-i386.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_hurd-i386.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_hurd-i386.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_hurd-i386.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_hurd-i386.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_hurd-i386.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_hurd-i386.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_hurd-i386.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_hurd-i386.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_hurd-i386.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_hurd-i386.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_hurd-i386.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_hurd-i386.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_hurd-i386.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_hurd-i386.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_hurd-i386.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_hurd-i386.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3+b1_hurd-i386.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3+b1_hurd-i386.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hurd-i386.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_hurd-i386.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_hurd-i386.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_hurd-i386.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_hurd-i386.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_hurd-i386.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_hurd-i386.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_hurd-i386.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_hurd-i386.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../zip_3.0-3_hurd-i386.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_hurd-i386.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_hurd-i386.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_hurd-i386.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_hurd-i386.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Processing triggers for man-db ...
+Processing triggers for install-info ...
+Setting up libmagic1 (5.03-5+b1) ...
+Setting up file (5.03-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3+b1) ...
+Setting up libpcre3-dev (8.12-3+b1) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Removing negative dependencies:
+Checking correctness of source dependencies...
+Kernel: GNU 0.3 hurd-i386 (i686-AT386)
+Toolchain package versions: libc0.3-dev_2.13-4 dpkg-dev_1.16.0.3 hurd-dev_20110519-1 gnumach-dev_2:1.3.99.dfsg.git20110305-1 gcc-4.6_4.6.0-9 g++-4.6_4.6.0-9 binutils_2.21.51.20110523-1 libstdc++6-4.6-dev_4.6.0-9 libstdc++6_4.6.0-9
+Package versions: adduser_3.112+nmu2 apt_0.8.14.1 apt-utils_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110421 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.4_4.4.6-3 cpp-4.5_4.5.3-1 cpp-4.6_4.6.0-9 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.6-2 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.03-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-7 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-9 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-5 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-9 gcc-4.6-base_4.6.0-9 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.4_4.4.6-3 gfortran-4.6_4.6.0-9 gnumach-dev_2:1.3.99.dfsg.git20110305-1 gnupg_1.4.11-3 gnupg-curl_1.4.11-3 gobjc-4.4_4.4.6-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-1 hurd-dev_20110519-1 ifupdown_0.6.9+hurd.1 inetutils-tools_2:1.8-3 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.16.2-0 libboost-iostreams1.42.0_1.42.0-4+b2 libboost-iostreams1.46.1_1.46.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.3_2.13-4 libc0.3-dev_2.13-4 libc0.3-xen_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.6-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libfribidi0_0.19.2-1 libgcc1_1:4.6.0-9 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgfortran3_4.6.0-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.4-2 libgomp1_4.6.0-9 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libident_0.22-3 libidn11_1.20-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 liblzo2-2_2.04-1 libmagic1_5.03-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libnewt0.52_0.52.11-2 libobjc2_4.5.3-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-3+b1 libpcre3-dev_8.12-3+b1 libpcrecpp0_8.12-3+b1 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpopt0_1.16-1 libppl-c2_0.10.2-9 libppl-c4_0.11.2-3 libppl7_0.10.2-9 libppl9_0.11.2-3 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libpwl5_0.11.2-3 libquadmath0_4.6.0-9 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 librtmp0_2.3-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0d-2 libstdc++6_4.6.0-9 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-9 libsysfs2_2.1.0+repack-1 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.16.2-0 libwrap0_7.6.dbs-14+hurd.2 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.45 netcat-traditional_1.10-39 openssl_1.0.0d-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-2 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.16.2-0 wget_1.11.4-4 whiptail_0.52.11-2 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture hurd-i386
+ /usr/bin/fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+ /usr/bin/fakeroot debian/rules binary-arch
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org> >../r-bioc-limma_3.8.2-1_hurd-i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110603-1131
+
+r-bioc-limma_3.8.2-1_hurd-i386.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: hurd-i386
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ d940e10f8d249c1b2cbba3b82529f59652435fde 1397864 r-bioc-limma_3.8.2-1_hurd-i386.deb
+Checksums-Sha256:
+ ce21284c52e74d5b40229324a205834176497655878f34c33e4ccebd7bdf39c8 1397864 r-bioc-limma_3.8.2-1_hurd-i386.deb
+Files:
+ 5957133de8d14f87e5bbd6d3176fe413 1397864 gnu-r optional r-bioc-limma_3.8.2-1_hurd-i386.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_hurd-i386.deb
+──────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1397864 bytes: control archive= 1514 bytes.
+ 774 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: hurd-i386
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1676
+ Depends: libc0.3 (>= 2.13), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-03 11:29 ./
+drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/
+drwxr-xr-x root/root 0 2011-06-03 11:26 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-03 11:26 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-03 11:27 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 997 2011-06-03 11:27 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1044 2011-06-03 11:27 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5522 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2853 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8076 2011-06-03 11:29 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172733 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3745 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84633 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-06-03 11:27 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1349 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 451100 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3261 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2361 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-03 11:28 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-03 11:28 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-06-03 11:28 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2116 2011-06-03 11:23 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-03 11:23 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+Purging /home/buildd/build/chroot-sid/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw
+(Reading database ... 16925 files and directories currently installed.)
+Removing r-base-dev ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
+Removing liblapack-dev ...
+Removing xdg-utils ...
+Removing zip ...
+Removing libpcre3-dev ...
+Removing libpaper-utils ...
+Removing libbz2-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libreadline-dev ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing cdbs ...
+Removing libreadline6-dev ...
+Removing libjpeg62-dev ...
+Removing debhelper ...
+Removing libpng12-dev ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libncurses5-dev ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libblas-dev ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing file ...
+Purging configuration files for file ...
+Removing zlib1g-dev ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing po-debconf ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libthai-data ...
+Removing libjpeg62 ...
+Removing intltool-debian ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing gettext ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing gettext-base ...
+Removing libfontconfig1 ...
+Purging configuration files for libfontconfig1 ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libexpat1 ...
+Purging configuration files for libexpat1 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing ttf-dejavu-core ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing libfreetype6 ...
+Purging configuration files for libfreetype6 ...
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Processing triggers for man-db ...
+Processing triggers for install-info ...
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110603-1131
+Build needed 00:21:22, 5080k disc space
+
diff --git a/amd64.log b/i386.log
similarity index 59%
copy from amd64.log
copy to i386.log
index 7e6a4bd..5e6551a 100644
--- a/amd64.log
+++ b/i386.log
@@ -1,86 +1,168 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+From buildd at murphy.debian.org Thu Jun 02 13:27:46 2011
+Return-path: <buildd at murphy.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
+ id 1QS7wA-0006hZ-6e
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:27:46 +0000
+Received: from murphy.debian.org ([70.103.162.31])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
+ id 1QS7w9-00047T-2C
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:27:45 +0000
+Received: from buildd by murphy.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at murphy.debian.org>)
+ id 1QS7w6-0001yt-ST; Thu, 02 Jun 2011 13:27:42 +0000
+Message-Id: <E1QS7w6-0001yt-ST at murphy.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Thu, 2 Jun 2011 13:27:42 +0000
+From: buildd on murphy <buildd at murphy.debian.org>
+To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on i386 (dist=sid)
+Key-Id: 1C3F1E5E
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (amd64) 02 Jun 2011 13:10 ║
+║ r-bioc-limma 3.8.2-1 (i386) 02 Jun 2011 13:26 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
Version: 3.8.2-1
Source Version: 3.8.2-1
-Distribution: unstable
-Architecture: amd64
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-GK7VJW' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-badec9ed-3191-419b-9664-72e3989450c0' with '«CHROOT»'
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
-Reading package lists...
+Architecture: i386
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.us.debian.org sid InRelease
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Get:2 http://incoming.debian.org Release [1604 B]
+Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
+Get:3 http://incoming.debian.org Sources [35.2 kB]
+Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
+Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
+Ign http://ftp.us.debian.org sid/contrib TranslationIndex
+Hit http://ftp.us.debian.org sid/main TranslationIndex
+Get:4 http://incoming.debian.org Packages [360 kB]
+Ign http://ftp.us.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 398 kB in 4s (95.9 kB/s)
Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
-Local sources
-─────────────
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
-r-bioc-limma_3.8.2-1.dsc exists in .; copying to chroot
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 2s (319 kB/s)
+Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8zHSJw/apt_archive/sbuild-build-depends-core-dummy.deb'.
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/706 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-z1_v1h/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
-OK
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-limma build dependencies (apt-based resolver) │
+│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4.0.1)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.8-2)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.7)
+sysvinit: already installed (2.88dsf-13.7)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-4)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
@@ -88,8 +170,8 @@ The following extra packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
@@ -112,44 +194,46 @@ The following NEW packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
+Need to get 3490 B/48.9 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://ftp.us.debian.org/debian/ sid/main r-base-dev all 2.13.0-2 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/53.1 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
+Fetched 3490 B in 0s (7276 B/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+(Reading database ... 10850 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_i386.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_i386.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_amd64.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-1_i386.deb) ...
Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_i386.deb) ...
Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
+Unpacking file (from .../file_5.04-5+b1_i386.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_i386.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_i386.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_i386.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_i386.deb) ...
Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ...
Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_i386.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-3_i386.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
@@ -161,117 +245,115 @@ Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_i386.deb) ...
Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_amd64.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_i386.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_i386.deb) ...
Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_i386.deb) ...
Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_amd64.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_i386.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_i386.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_i386.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_i386.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_i386.deb) ...
Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_i386.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_amd64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_i386.deb) ...
Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_i386.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_i386.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_i386.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-2_i386.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_amd64.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_i386.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_i386.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_i386.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_i386.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_i386.deb) ...
Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_amd64.deb) ...
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_i386.deb) ...
Selecting previously deselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_i386.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_i386.deb) ...
Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_i386.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_i386.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_i386.deb) ...
Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_i386.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.15-1_i386.deb) ...
Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
+Unpacking libxft2 (from .../libxft2_2.2.0-2_i386.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_i386.deb) ...
Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_i386.deb) ...
Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_i386.deb) ...
Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_i386.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_i386.deb) ...
Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_i386.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_i386.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_i386.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_i386.deb) ...
Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_i386.deb) ...
Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_i386.deb) ...
Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_amd64.deb) ...
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_i386.deb) ...
Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_i386.deb) ...
Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_i386.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_amd64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-3_i386.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-4_i386.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_i386.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_i386.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_i386.deb) ...
Selecting previously deselected package r-base-dev.
Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-limma-dummy.
-Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
@@ -367,15 +449,15 @@ Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-2) ...
-Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1+b1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1+b1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1
+Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -385,7 +467,10 @@ Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.8.2-1.dsc)
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
@@ -393,7 +478,6 @@ dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
dpkg-buildpackage
─────────────────
@@ -405,18 +489,17 @@ dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
dpkg-buildpackage: source version 3.8.2-1
-dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-bioc-limma-3.8.2
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -432,32 +515,26 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-limma-3.8.2
-dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
-dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.diff.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
+
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
- fakeroot debian/rules binary
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -467,23 +544,23 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -493,13 +570,13 @@ installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/sit
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
@@ -535,36 +612,25 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-limma_3.8.2-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-limma_3.8.2-1_i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-limma-3.8.2
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1312
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-limma_3.8.2-1_amd64.changes:
-───────────────────────────────────
+Build finished at 20110602-1327
+r-bioc-limma_3.8.2-1_i386.changes:
Format: 1.8
Date: Thu, 02 Jun 2011 13:07:58 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
-Architecture: source amd64
+Architecture: i386
Version: 3.8.2-1
-Distribution: unstable
+Distribution: sid
Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
@@ -574,39 +640,30 @@ Changes:
.
* Initial release (closes: #628548).
Checksums-Sha1:
- a5543c9595c2f6990ccc5f560c601f0840bd3c9b 1045 r-bioc-limma_3.8.2-1.dsc
- 8424f7ce6d39355f2b410db4fc11c7ba67d65bed 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 1aee4cf6f887e704f27946fce20a345103899e07 2158 r-bioc-limma_3.8.2-1.diff.gz
- 7a9021d1a25139cd267b1cbe65c70f00f65f33f6 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ 27a49a3be46d628591b9bf5f62c44d770f8cb0de 1393980 r-bioc-limma_3.8.2-1_i386.deb
Checksums-Sha256:
- 48beab63b46f6822f687cb19301be159bd18b9749791bb6ee975a9b98d96c677 1045 r-bioc-limma_3.8.2-1.dsc
- 9a824792349de351a6623102feb5c2f4bc3642215496eb3422a78938422c970f 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 6f5a543511b1b3d29d68e2dbf4aa48c1371fa0af2b9f9d40272132f629f6b94f 2158 r-bioc-limma_3.8.2-1.diff.gz
- e00c45565d2296ad3c74e6364d350f488e2bf5d49845694739db00cdcab61a02 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ a75b17393fdd967df4cee624b3c525853c92eca767f8bcb587a31788f4d7b1ff 1393980 r-bioc-limma_3.8.2-1_i386.deb
Files:
- 2944af4b5a4729edf5ec047d3f06edb1 1045 gnu-r optional r-bioc-limma_3.8.2-1.dsc
- 3ee3f6366c152f599dbd8bedefded85b 916654 gnu-r optional r-bioc-limma_3.8.2.orig.tar.gz
- 63cf5d468f9d7468cf41bb22c4554915 2158 gnu-r optional r-bioc-limma_3.8.2-1.diff.gz
- b5de0e25504dcc8ed7abb73be130c3d8 1395084 gnu-r optional r-bioc-limma_3.8.2-1_amd64.deb
+ b1058690562b3704882d890e6d1b6674 1393980 gnu-r optional r-bioc-limma_3.8.2-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_amd64.deb
-──────────────────────────────
+r-bioc-limma_3.8.2-1_i386.deb
+─────────────────────────────
new debian package, version 2.0.
- size 1395084 bytes: control archive= 1509 bytes.
- 769 bytes, 16 lines control
+ size 1393980 bytes: control archive= 1506 bytes.
+ 768 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
Version: 3.8.2-1
- Architecture: amd64
+ Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1656
- Depends: libc6 (>= 2.2.5), r-base-core (>= 2.13.0~)
+ Installed-Size: 1672
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -618,62 +675,64 @@ r-bioc-limma_3.8.2-1_amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 172718 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3733 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 384 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 446442 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3251 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1302 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/paths.rds
--rwxr-xr-x root/root 1230 2011-06-02 13:12 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1872 2011-06-02 13:12 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5946 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 503 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2853 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1049 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 1005 2011-06-02 13:12 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10856 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9360 2011-06-02 13:12 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 687780 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 13:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2116 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 161 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9360 2011-06-02 13:27 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-06-02 13:27 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-06-02 13:27 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1872 2011-06-02 13:27 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2011-06-02 13:27 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8076 2011-06-02 13:27 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 172728 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 384 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3733 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2361 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 449846 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6150 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1335 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3247 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/limma.rdx
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 45616 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84633 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 687780 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1711 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1048 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 217 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 5946 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 2853 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5522 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 1003 2011-06-02 13:27 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 161 2011-06-02 13:27 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2116 2011-06-02 13:27 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Finished │
└──────────────────────────────────────────────────────────────────────────────┘
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /var/lib/schroot/mount/sid-i386-sbuild-fb8a560d-99cb-4793-b349-a439ebaca29a/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB
Reading package lists...
Building dependency tree...
Reading state information...
@@ -693,13 +752,11 @@ The following packages will be REMOVED:
libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data*
libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* sbuild-build-depends-core-dummy*
- sbuild-build-depends-r-bioc-limma-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
- ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded.
-After this operation, 129 MB disk space will be freed.
-(Reading database ... 14745 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-limma-dummy ...
+ r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common*
+ xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 75 to remove and 0 not upgraded.
+After this operation, 119 MB disk space will be freed.
+(Reading database ... 14791 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -811,7 +868,6 @@ Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
@@ -831,18 +887,19 @@ Removing zlib1g-dev ...
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 5944
-Build-Time: 9
-Distribution: unstable
-Install-Time: 90
-Job: r-bioc-limma_3.8.2-1.dsc
+Architecture: i386
+Build-Space: 5072
+Build-Time: 20
+Distribution: sid
+Install-Time: 23
+Job: r-bioc-limma_3.8.2-1
Package: r-bioc-limma
-Package-Time: 102
+Package-Time: 55
Source-Version: 3.8.2-1
-Space: 5944
+Space: 5072
Status: successful
Version: 3.8.2-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1312
-Build needed 00:01:42, 5944k disc space
+Finished at 20110602-1327
+Build needed 00:00:55, 5072k disc space
+Signature with key '1C3F1E5E' requested:
diff --git a/amd64.log b/ia64.log
similarity index 51%
copy from amd64.log
copy to ia64.log
index 7e6a4bd..94174a7 100644
--- a/amd64.log
+++ b/ia64.log
@@ -1,155 +1,234 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+From buildd at caballero.debian.org Fri Jun 03 03:57:30 2011
+Return-path: <buildd at caballero.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
+ id 1QSLVp-00061m-LP
+ for logs at buildd.debian.org; Fri, 03 Jun 2011 03:57:30 +0000
+Received: from caballero.debian.org ([193.201.200.200])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=caballero.debian.org,
+ EMAIL=hostmaster at caballero.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
+ id 1QSLVo-0002TL-6i; Fri, 03 Jun 2011 03:57:28 +0000
+Received: from buildd by caballero.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at caballero.debian.org>) id 1QSLVn-0002cj-BO
+ for buildd-porters at caballero.debian.org; Fri, 03 Jun 2011 03:57:27 +0000
+From: buildd on caballero <buildd at caballero.debian.org>
+To: buildd-porters at caballero.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on ia64 (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QSLVn-0002cj-BO at caballero.debian.org>
+Date: Fri, 03 Jun 2011 03:57:27 +0000
+Delivered-To: buildd-porters at caballero.debian.org
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on caballero.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (amd64) 02 Jun 2011 13:10 ║
+║ r-bioc-limma 3.8.2-1 (ia64) 03 Jun 2011 03:55 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
Version: 3.8.2-1
Source Version: 3.8.2-1
-Distribution: unstable
-Architecture: amd64
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-GK7VJW' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-badec9ed-3191-419b-9664-72e3989450c0' with '«CHROOT»'
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
-Reading package lists...
+Architecture: ia64
+Hit http://mirror.positive-internet.com sid InRelease
+Hit http://mirror.positive-internet.com sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://mirror.positive-internet.com sid/contrib Sources/DiffIndex
+Hit http://mirror.positive-internet.com sid/main ia64 Packages/DiffIndex
+Hit http://mirror.positive-internet.com sid/contrib ia64 Packages/DiffIndex
+Ign http://mirror.positive-internet.com sid/contrib TranslationIndex
+Hit http://mirror.positive-internet.com sid/main TranslationIndex
+Hit http://incoming.debian.org Release.gpg
+Ign http://mirror.positive-internet.com sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main ia64 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib ia64 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
-Local sources
-─────────────
+Check APT
+─────────
-r-bioc-limma_3.8.2-1.dsc exists in .; copying to chroot
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://mirror.positive-internet.com/debian/ sid/main r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://mirror.positive-internet.com/debian/ sid/main r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://mirror.positive-internet.com/debian/ sid/main r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 0s (5010 kB/s)
+Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8zHSJw/apt_archive/sbuild-build-depends-core-dummy.deb'.
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/706 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-z1_v1h/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
-OK
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-limma build dependencies (apt-based resolver) │
+│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6.1-dev: already installed (2.13-4)
+gcc: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.4 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ gfortran-doc gfortran-4.4-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ gettext-base gfortran gfortran-4.4 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/53.1 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
+0 upgraded, 76 newly installed, 0 to remove and 10 not upgraded.
+Need to get 0 B/64.5 MB of archives.
+After this operation, 182 MB of additional disk space will be used.
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+(Reading database ... 10487 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_ia64.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_ia64.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_amd64.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_ia64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-1_ia64.deb) ...
Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_ia64.deb) ...
Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
+Unpacking file (from .../file_5.04-5+b1_ia64.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_ia64.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_ia64.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_ia64.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_ia64.deb) ...
Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ...
Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_ia64.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-3_ia64.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
@@ -161,117 +240,117 @@ Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_ia64.deb) ...
Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_amd64.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_ia64.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_ia64.deb) ...
Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_ia64.deb) ...
+Selecting previously deselected package libquadmath0.
+Unpacking libquadmath0 (from .../libquadmath0_4.6.0-10_ia64.deb) ...
Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_amd64.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_amd64.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_ia64.deb) ...
+Selecting previously deselected package gfortran-4.4.
+Unpacking gfortran-4.4 (from .../gfortran-4.4_4.4.6-3_ia64.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.4.5-9_ia64.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_ia64.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_ia64.deb) ...
Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_ia64.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_amd64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_ia64.deb) ...
Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_ia64.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_ia64.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_ia64.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-2_ia64.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_amd64.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_ia64.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_ia64.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_ia64.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_ia64.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_ia64.deb) ...
Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_amd64.deb) ...
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_ia64.deb) ...
Selecting previously deselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_ia64.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_ia64.deb) ...
Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_ia64.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_ia64.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.2.1-8_ia64.deb) ...
Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_ia64.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.15-1_ia64.deb) ...
Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
+Unpacking libxft2 (from .../libxft2_2.2.0-2_ia64.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_ia64.deb) ...
Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_ia64.deb) ...
Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_ia64.deb) ...
Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_ia64.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_ia64.deb) ...
Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_ia64.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_ia64.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_ia64.deb) ...
Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_ia64.deb) ...
Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_ia64.deb) ...
Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_amd64.deb) ...
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_ia64.deb) ...
Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_ia64.deb) ...
Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_ia64.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_amd64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-3_ia64.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-4_ia64.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_ia64.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_ia64.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_ia64.deb) ...
Selecting previously deselected package r-base-dev.
Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-limma-dummy.
-Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
@@ -304,9 +383,10 @@ Setting up libfontconfig1 (2.8.0-2.2) ...
Setting up fontconfig (2.8.0-2.2) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
+Setting up libquadmath0 (4.6.0-10) ...
Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.4 (4.4.6-3) ...
+Setting up gfortran (4:4.4.5-9) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
@@ -331,9 +411,9 @@ invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-1) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.2.1-8) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.2.1-8) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
Setting up libthai-data (0.1.15-1) ...
@@ -367,15 +447,15 @@ Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-2) ...
-Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1+b1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1+b1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 gcc-4.4_4.4.6-3 libc6.1-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 linux-libc-dev_2.6.38-5
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.4.5-9 cpp-4.4_4.4.6-3 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-9 g++-4.4_4.4.6-3 gcc_4:4.4.5-9 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.4.5-9 gfortran-4.4_4.4.6-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6.1_2.13-4 libc6.1-dev_2.13-4 libcairo2_1.10.2-6 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.2.1-8 liblapack3gf_3.2.1-8 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libunwind7_0.99-0.2 libunwind7-dev_0.99-0.2 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -385,7 +465,11 @@ Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.8.2-1.dsc)
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
@@ -393,11 +477,11 @@ dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
@@ -405,18 +489,25 @@ dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
dpkg-buildpackage: source version 3.8.2-1
-dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-bioc-limma-3.8.2
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -432,32 +523,42 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-limma-3.8.2
-dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
-dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.diff.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.dsc
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
- fakeroot debian/rules binary
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -467,23 +568,23 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
-normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+normexp.c:153: warning: floating constant exceeds range of 'double'
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -493,13 +594,13 @@ installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/sit
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
@@ -535,36 +636,25 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-limma_3.8.2-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../r-bioc-limma_3.8.2-1_ia64.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-limma-3.8.2
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1312
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-limma_3.8.2-1_amd64.changes:
-───────────────────────────────────
+Build finished at 20110603-0356
+r-bioc-limma_3.8.2-1_ia64.changes:
Format: 1.8
Date: Thu, 02 Jun 2011 13:07:58 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
-Architecture: source amd64
+Architecture: ia64
Version: 3.8.2-1
-Distribution: unstable
+Distribution: sid
Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: ia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
@@ -574,39 +664,30 @@ Changes:
.
* Initial release (closes: #628548).
Checksums-Sha1:
- a5543c9595c2f6990ccc5f560c601f0840bd3c9b 1045 r-bioc-limma_3.8.2-1.dsc
- 8424f7ce6d39355f2b410db4fc11c7ba67d65bed 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 1aee4cf6f887e704f27946fce20a345103899e07 2158 r-bioc-limma_3.8.2-1.diff.gz
- 7a9021d1a25139cd267b1cbe65c70f00f65f33f6 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ 1f5afbe4e44553cb03c61f2b8b4a5a62a8e6af37 1403682 r-bioc-limma_3.8.2-1_ia64.deb
Checksums-Sha256:
- 48beab63b46f6822f687cb19301be159bd18b9749791bb6ee975a9b98d96c677 1045 r-bioc-limma_3.8.2-1.dsc
- 9a824792349de351a6623102feb5c2f4bc3642215496eb3422a78938422c970f 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 6f5a543511b1b3d29d68e2dbf4aa48c1371fa0af2b9f9d40272132f629f6b94f 2158 r-bioc-limma_3.8.2-1.diff.gz
- e00c45565d2296ad3c74e6364d350f488e2bf5d49845694739db00cdcab61a02 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ e4dfca8a0be189d9a5647edc2255cdfaafd97571859f378cd36e9d382faa8a1a 1403682 r-bioc-limma_3.8.2-1_ia64.deb
Files:
- 2944af4b5a4729edf5ec047d3f06edb1 1045 gnu-r optional r-bioc-limma_3.8.2-1.dsc
- 3ee3f6366c152f599dbd8bedefded85b 916654 gnu-r optional r-bioc-limma_3.8.2.orig.tar.gz
- 63cf5d468f9d7468cf41bb22c4554915 2158 gnu-r optional r-bioc-limma_3.8.2-1.diff.gz
- b5de0e25504dcc8ed7abb73be130c3d8 1395084 gnu-r optional r-bioc-limma_3.8.2-1_amd64.deb
+ c907f758a1b76fe3bda5ecd0e3d87afd 1403682 gnu-r optional r-bioc-limma_3.8.2-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_amd64.deb
-──────────────────────────────
+r-bioc-limma_3.8.2-1_ia64.deb
+─────────────────────────────
new debian package, version 2.0.
- size 1395084 bytes: control archive= 1509 bytes.
- 769 bytes, 16 lines control
+ size 1403682 bytes: control archive= 1507 bytes.
+ 768 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
Version: 3.8.2-1
- Architecture: amd64
+ Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1656
- Depends: libc6 (>= 2.2.5), r-base-core (>= 2.13.0~)
+ Installed-Size: 1692
+ Depends: libc6.1 (>= 2.2), r-base-core (>= 2.13.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -618,88 +699,88 @@ r-bioc-limma_3.8.2-1_amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 172718 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3733 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 384 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 446442 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3251 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1302 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/paths.rds
--rwxr-xr-x root/root 1230 2011-06-02 13:12 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1872 2011-06-02 13:12 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5946 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 503 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2853 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1049 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 1005 2011-06-02 13:12 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10856 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9360 2011-06-02 13:12 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 687780 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 13:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2116 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 161 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-03 03:56 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1008 2011-06-03 03:56 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1052 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5522 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2853 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 25328 2011-06-03 03:56 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172729 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3737 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84633 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-06-03 03:56 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1335 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 449901 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3249 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2361 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-03 03:56 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-03 03:56 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-06-03 03:56 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2116 2011-06-03 03:56 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-03 03:56 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Finished │
└──────────────────────────────────────────────────────────────────────────────┘
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-ab60cc96-e6ee-4d17-92c0-533972261553/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
- gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ gettext* gettext-base* gfortran* gfortran-4.4* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data*
- libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* sbuild-build-depends-core-dummy*
- sbuild-build-depends-r-bioc-limma-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
- ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded.
-After this operation, 129 MB disk space will be freed.
-(Reading database ... 14745 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-limma-dummy ...
+ libpng12-0* libpng12-dev* libquadmath0* libreadline-dev* libreadline6-dev*
+ libsm6* libthai-data* libthai0* libtiff4* libunistring0* libx11-6*
+ libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
+ libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
+ po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf*
+ unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 76 to remove and 10 not upgraded.
+After this operation, 182 MB disk space will be freed.
+(Reading database ... 14430 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -731,7 +812,7 @@ Removing intltool-debian ...
Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
-Removing gfortran-4.6 ...
+Removing gfortran-4.4 ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
@@ -787,6 +868,8 @@ Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
Removing libpng12-0 ...
Purging configuration files for libpng12-0 ...
+Removing libquadmath0 ...
+Purging configuration files for libquadmath0 ...
Removing libthai-data ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
@@ -811,7 +894,6 @@ Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
@@ -823,6 +905,7 @@ Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
@@ -831,18 +914,19 @@ Removing zlib1g-dev ...
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 5944
-Build-Time: 9
-Distribution: unstable
-Install-Time: 90
-Job: r-bioc-limma_3.8.2-1.dsc
+Architecture: ia64
+Build-Space: 5100
+Build-Time: 39
+Distribution: sid
+Install-Time: 56
+Job: r-bioc-limma_3.8.2-1
Package: r-bioc-limma
-Package-Time: 102
+Package-Time: 106
Source-Version: 3.8.2-1
-Space: 5944
+Space: 5100
Status: successful
Version: 3.8.2-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1312
-Build needed 00:01:42, 5944k disc space
+Finished at 20110603-0356
+Build needed 00:01:46, 5100k disc space
+
diff --git a/info b/info
new file mode 100644
index 0000000..f67d4ea
--- /dev/null
+++ b/info
@@ -0,0 +1,11 @@
+i386~1307021266~sid~successful
+powerpc~1307021526~sid~successful
+kfreebsd-amd64~1307021841~sid~successful
+mips~1307021876~sid~successful
+kfreebsd-i386~1307021898~sid~successful
+s390~1307023919~sid~successful
+mipsel~1307026638~sid~successful
+sparc~1307028710~sid~successful
+armel~1307030093~sid~successful
+ia64~1307073450~sid~successful
+hurd-i386~1307100902~sid~successful
diff --git a/amd64.log b/kfreebsd-amd64.log
similarity index 50%
copy from amd64.log
copy to kfreebsd-amd64.log
index 7e6a4bd..2d82d12 100644
--- a/amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,155 +1,242 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+From buildd at fano.debian.org Thu Jun 02 13:37:19 2011
+Return-path: <buildd at fano.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1QS85P-0007vA-Mo
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:19 +0000
+Received: from fano.debian.org ([206.12.19.110])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1QS85O-0007BU-7J; Thu, 02 Jun 2011 13:37:18 +0000
+Received: from buildd by fano.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fano.debian.org>)
+ id 1QS85L-0003wH-Tw; Thu, 02 Jun 2011 13:37:15 +0000
+Message-Id: <E1QS85L-0003wH-Tw at fano.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Thu, 2 Jun 2011 13:37:15 +0000
+From: buildd on fano <buildd at fano.debian.org>
+To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on kfreebsd-amd64
+ (dist=sid)
+Key-Id: 91116966
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (amd64) 02 Jun 2011 13:10 ║
+║ r-bioc-limma 3.8.2-1 (kfreebsd-amd64) 02 Jun 2011 13:33 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
Version: 3.8.2-1
Source Version: 3.8.2-1
-Distribution: unstable
-Architecture: amd64
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-GK7VJW' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-badec9ed-3191-419b-9664-72e3989450c0' with '«CHROOT»'
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
-Reading package lists...
+Architecture: kfreebsd-amd64
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid InRelease
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
+Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
+Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://incoming.debian.org sid/non-free TranslationIndex
+Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
+Get:2 http://incoming.debian.org Release [1604 B]
+Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
+Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
+Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
+Hit http://mirror-ubc.debian.org sid/main TranslationIndex
+Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages
+Ign http://mirror-ubc.debian.org sid/contrib Translation-en
+Ign http://mirror-ubc.debian.org sid/non-free Translation-en
+Get:3 http://incoming.debian.org Sources [36.2 kB]
+Get:4 http://incoming.debian.org Packages [362 kB]
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org sid/non-free Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 401 kB in 6s (63.3 kB/s)
Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
-Local sources
-─────────────
+Check APT
+─────────
-r-bioc-limma_3.8.2-1.dsc exists in .; copying to chroot
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 1s (529 kB/s)
+Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8zHSJw/apt_archive/sbuild-build-depends-core-dummy.deb'.
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/706 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-z1_v1h/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
-OK
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-limma build dependencies (apt-based resolver) │
+│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4.0.1)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1)
+freebsd-utils: already installed (8.1-4+b1)
+grep: already installed (2.8-2)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.7)
+sysvinit: already installed (2.88dsf-13.7)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/53.1 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/52.5 MB of archives.
+After this operation, 125 MB of additional disk space will be used.
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
+(Reading database ... 12246 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-5_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_amd64.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-amd64.deb) ...
Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
+Unpacking file (from .../file_5.04-5+b1_kfreebsd-amd64.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_kfreebsd-amd64.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
@@ -160,121 +247,112 @@ Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_amd64.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_kfreebsd-amd64.deb) ...
Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_amd64.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_kfreebsd-amd64.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_kfreebsd-amd64.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_kfreebsd-amd64.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-amd64.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-amd64.deb) ...
Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_amd64.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_amd64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_amd64.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_kfreebsd-amd64.deb) ...
Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_amd64.deb) ...
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.15-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
+Unpacking libxft2 (from .../libxft2_2.2.0-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_amd64.deb) ...
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_amd64.deb) ...
+Unpacking zip (from .../zip_3.0-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../unzip_6.0-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package r-base-dev.
Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-limma-dummy.
-Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-5) ...
Setting up libpipeline1 (1.2.0-2) ...
Setting up man-db (2.6.0.2-1) ...
@@ -296,7 +374,6 @@ Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.1.6) ...
Setting up cdbs (0.4.94) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
Setting up libfreetype6 (2.4.4-1) ...
Setting up ttf-dejavu-core (2.33-1) ...
Setting up fontconfig-config (2.8.0-2.2) ...
@@ -314,7 +391,6 @@ Setting up libblas-dev (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
Setting up libxau6 (1:1.0.6-1) ...
Setting up libxdmcp6 (1:1.1.0-1) ...
Setting up libxcb1 (1.7-2) ...
@@ -367,15 +443,15 @@ Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-2) ...
-Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1+b1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1+b1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
+Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 kfreebsd-kernel-headers_0.54 libc0.1-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10
+Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 freebsd-utils_8.1-4+b1 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.54 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.1_2.13-4 libc0.1-dev_2.13-4 libcairo2_1.10.2-6 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-10 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libkiconv4_8.1-5 libkvm0_8.1-5 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libsbuf0_8.1-5 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011g-1 ucf_3.0025+nmu2 ufsutils_8.2-1 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -385,7 +461,10 @@ Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.8.2-1.dsc)
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
@@ -393,7 +472,6 @@ dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
dpkg-buildpackage
─────────────────
@@ -405,18 +483,17 @@ dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
dpkg-buildpackage: source version 3.8.2-1
-dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-bioc-limma-3.8.2
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: host architecture kfreebsd-amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -432,32 +509,26 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-limma-3.8.2
-dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
-dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.diff.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
+
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
- fakeroot debian/rules binary
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -467,23 +538,23 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -493,13 +564,13 @@ installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/sit
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
@@ -535,36 +606,25 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-limma_3.8.2-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-limma_3.8.2-1_kfreebsd-amd64.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-limma-3.8.2
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1312
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-limma_3.8.2-1_amd64.changes:
-───────────────────────────────────
+Build finished at 20110602-1336
+r-bioc-limma_3.8.2-1_kfreebsd-amd64.changes:
Format: 1.8
Date: Thu, 02 Jun 2011 13:07:58 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
-Architecture: source amd64
+Architecture: kfreebsd-amd64
Version: 3.8.2-1
-Distribution: unstable
+Distribution: sid
Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
@@ -574,39 +634,30 @@ Changes:
.
* Initial release (closes: #628548).
Checksums-Sha1:
- a5543c9595c2f6990ccc5f560c601f0840bd3c9b 1045 r-bioc-limma_3.8.2-1.dsc
- 8424f7ce6d39355f2b410db4fc11c7ba67d65bed 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 1aee4cf6f887e704f27946fce20a345103899e07 2158 r-bioc-limma_3.8.2-1.diff.gz
- 7a9021d1a25139cd267b1cbe65c70f00f65f33f6 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ ea44ce8dfb228fbea8856751fdde27ba66edbab6 1398488 r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
Checksums-Sha256:
- 48beab63b46f6822f687cb19301be159bd18b9749791bb6ee975a9b98d96c677 1045 r-bioc-limma_3.8.2-1.dsc
- 9a824792349de351a6623102feb5c2f4bc3642215496eb3422a78938422c970f 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 6f5a543511b1b3d29d68e2dbf4aa48c1371fa0af2b9f9d40272132f629f6b94f 2158 r-bioc-limma_3.8.2-1.diff.gz
- e00c45565d2296ad3c74e6364d350f488e2bf5d49845694739db00cdcab61a02 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ 6a32301d8c8d9965cbd7436b4df414efff41ea42bf8c41ea059e0f4654041662 1398488 r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
Files:
- 2944af4b5a4729edf5ec047d3f06edb1 1045 gnu-r optional r-bioc-limma_3.8.2-1.dsc
- 3ee3f6366c152f599dbd8bedefded85b 916654 gnu-r optional r-bioc-limma_3.8.2.orig.tar.gz
- 63cf5d468f9d7468cf41bb22c4554915 2158 gnu-r optional r-bioc-limma_3.8.2-1.diff.gz
- b5de0e25504dcc8ed7abb73be130c3d8 1395084 gnu-r optional r-bioc-limma_3.8.2-1_amd64.deb
+ 92911f97d49d2e8ce5c0cc5fb06899e3 1398488 gnu-r optional r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_amd64.deb
-──────────────────────────────
+r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
+───────────────────────────────────────
new debian package, version 2.0.
- size 1395084 bytes: control archive= 1509 bytes.
- 769 bytes, 16 lines control
+ size 1398488 bytes: control archive= 1510 bytes.
+ 778 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
Version: 3.8.2-1
- Architecture: amd64
+ Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1656
- Depends: libc6 (>= 2.2.5), r-base-core (>= 2.13.0~)
+ Installed-Size: 1630
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -618,62 +669,64 @@ r-bioc-limma_3.8.2-1_amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 172718 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3733 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 384 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 446442 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3251 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1302 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/paths.rds
--rwxr-xr-x root/root 1230 2011-06-02 13:12 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1872 2011-06-02 13:12 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5946 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 503 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2853 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1049 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 1005 2011-06-02 13:12 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10856 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9360 2011-06-02 13:12 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 687780 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 13:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2116 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 161 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-02 13:36 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1008 2011-06-02 13:36 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1055 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5522 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2853 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10856 2011-06-02 13:36 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172735 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3738 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84633 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-06-02 13:36 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1346 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 452076 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3251 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2361 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-06-02 13:36 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2116 2011-06-02 13:36 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-02 13:36 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Finished │
└──────────────────────────────────────────────────────────────────────────────┘
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1307021627-12569/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt
Reading package lists...
Building dependency tree...
Reading state information...
@@ -682,31 +735,24 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
- gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
+ gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
- liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
- libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data*
- libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* sbuild-build-depends-core-dummy*
- sbuild-build-depends-r-bioc-limma-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
- ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded.
-After this operation, 129 MB disk space will be freed.
-(Reading database ... 14745 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-limma-dummy ...
+ libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
+ libice6* libjpeg62* libjpeg62-dev* liblapack-dev* liblapack3gf* libmagic1*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3*
+ libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
+ libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
+ libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
+ libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
+ libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 72 to remove and 0 not upgraded.
+After this operation, 125 MB disk space will be freed.
+(Reading database ... 16058 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
Removing dpatch ...
Purging configuration files for dpatch ...
Removing file ...
@@ -732,6 +778,8 @@ Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
Removing gfortran-4.6 ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
@@ -749,8 +797,6 @@ Removing libthai0 ...
Purging configuration files for libthai0 ...
Removing libdatrie1 ...
Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libgfortran3 ...
@@ -785,8 +831,6 @@ Purging configuration files for libpipeline1 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
-Removing libpng12-0 ...
-Purging configuration files for libpng12-0 ...
Removing libthai-data ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
@@ -811,7 +855,6 @@ Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
@@ -823,6 +866,7 @@ Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
@@ -831,18 +875,19 @@ Removing zlib1g-dev ...
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 5944
-Build-Time: 9
-Distribution: unstable
-Install-Time: 90
-Job: r-bioc-limma_3.8.2-1.dsc
+Architecture: kfreebsd-amd64
+Build-Space: 4772
+Build-Time: 24
+Distribution: sid
+Install-Time: 126
+Job: r-bioc-limma_3.8.2-1
Package: r-bioc-limma
-Package-Time: 102
+Package-Time: 167
Source-Version: 3.8.2-1
-Space: 5944
+Space: 4772
Status: successful
Version: 3.8.2-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1312
-Build needed 00:01:42, 5944k disc space
+Finished at 20110602-1336
+Build needed 00:02:47, 4772k disc space
+Signature with key '91116966' requested:
diff --git a/amd64.log b/kfreebsd-i386.log
similarity index 50%
copy from amd64.log
copy to kfreebsd-i386.log
index 7e6a4bd..f33c6a4 100644
--- a/amd64.log
+++ b/kfreebsd-i386.log
@@ -1,155 +1,240 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+From buildd at finzi.debian.org Thu Jun 02 13:38:18 2011
+Return-path: <buildd at finzi.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1QS86L-00083p-VS
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:38:18 +0000
+Received: from finzi.debian.org ([206.12.19.111])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1QS86K-0007Df-HL; Thu, 02 Jun 2011 13:38:16 +0000
+Received: from buildd by finzi.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at finzi.debian.org>)
+ id 1QS86I-0002Au-68; Thu, 02 Jun 2011 13:38:14 +0000
+Message-Id: <E1QS86I-0002Au-68 at finzi.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Thu, 2 Jun 2011 13:38:14 +0000
+From: buildd on finzi <buildd at finzi.debian.org>
+To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on kfreebsd-i386
+ (dist=sid)
+Key-Id: BB0A10AB
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (amd64) 02 Jun 2011 13:10 ║
+║ r-bioc-limma 3.8.2-1 (kfreebsd-i386) 02 Jun 2011 13:34 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
Version: 3.8.2-1
Source Version: 3.8.2-1
-Distribution: unstable
-Architecture: amd64
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-GK7VJW' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-badec9ed-3191-419b-9664-72e3989450c0' with '«CHROOT»'
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
-Reading package lists...
+Architecture: kfreebsd-i386
+Hit http://mirror-ubc.debian.org sid InRelease
+Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
+Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
+Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
+Hit http://mirror-ubc.debian.org sid/main TranslationIndex
+Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Ign http://mirror-ubc.debian.org sid/contrib Translation-en
+Ign http://mirror-ubc.debian.org sid/non-free Translation-en
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
+Hit http://incoming.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://incoming.debian.org sid/non-free TranslationIndex
+Get:2 http://incoming.debian.org Release [1604 B]
+Get:3 http://incoming.debian.org Sources [36.2 kB]
+Get:4 http://incoming.debian.org Packages [362 kB]
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org sid/non-free Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 401 kB in 5s (78.0 kB/s)
Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
-Local sources
-─────────────
+Check APT
+─────────
-r-bioc-limma_3.8.2-1.dsc exists in .; copying to chroot
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 2s (448 kB/s)
+Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8zHSJw/apt_archive/sbuild-build-depends-core-dummy.deb'.
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/706 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-z1_v1h/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
-OK
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-limma build dependencies (apt-based resolver) │
+│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4.0.1)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1)
+freebsd-utils: already installed (8.1-4)
+grep: already installed (2.8-2)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.7)
+sysvinit: already installed (2.88dsf-13.7)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ devscripts dh-make curl defoma gettext-doc gfortran-doc gfortran-4.6-doc
libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
- x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ patchutils autopoint libglib2.0-data shared-mime-info x-ttcidfont-conf
+ xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/53.1 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/47.9 MB of archives.
+After this operation, 112 MB of additional disk space will be used.
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
+(Reading database ... 12239 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-5_kfreebsd-i386.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_amd64.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_kfreebsd-i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-i386.deb) ...
Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
+Unpacking file (from .../file_5.04-5+b1_kfreebsd-i386.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_kfreebsd-i386.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-i386.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-i386.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
@@ -160,121 +245,112 @@ Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_amd64.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_kfreebsd-i386.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_kfreebsd-i386.deb) ...
Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_kfreebsd-i386.deb) ...
Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_amd64.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_kfreebsd-i386.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_kfreebsd-i386.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_kfreebsd-i386.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-i386.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-i386.deb) ...
Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-i386.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_amd64.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_amd64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_amd64.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_kfreebsd-i386.deb) ...
Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_amd64.deb) ...
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_kfreebsd-i386.deb) ...
Selecting previously deselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-i386.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-i386.deb) ...
Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.15-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
+Unpacking libxft2 (from .../libxft2_2.2.0-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_kfreebsd-i386.deb) ...
Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-i386.deb) ...
Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-i386.deb) ...
Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-i386.deb) ...
Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_amd64.deb) ...
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_amd64.deb) ...
+Unpacking zip (from .../zip_3.0-3_kfreebsd-i386.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../unzip_6.0-4_kfreebsd-i386.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_kfreebsd-i386.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_kfreebsd-i386.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_kfreebsd-i386.deb) ...
Selecting previously deselected package r-base-dev.
Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-limma-dummy.
-Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-5) ...
Setting up libpipeline1 (1.2.0-2) ...
Setting up man-db (2.6.0.2-1) ...
@@ -296,7 +372,6 @@ Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.1.6) ...
Setting up cdbs (0.4.94) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
Setting up libfreetype6 (2.4.4-1) ...
Setting up ttf-dejavu-core (2.33-1) ...
Setting up fontconfig-config (2.8.0-2.2) ...
@@ -314,7 +389,6 @@ Setting up libblas-dev (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
Setting up libxau6 (1:1.0.6-1) ...
Setting up libxdmcp6 (1:1.1.0-1) ...
Setting up libxcb1 (1.7-2) ...
@@ -367,15 +441,15 @@ Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-2) ...
-Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1+b1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1+b1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
+Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 kfreebsd-kernel-headers_0.54 libc0.1-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10
+Package versions: apt_0.8.14.1 autotools-dev_20110511.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 freebsd-utils_8.1-4 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.54 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.1_2.13-4 libc0.1-dev_2.13-4 libcairo2_1.10.2-6 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-10 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libkiconv4_8.1-5 libkvm0_8.1-5 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libsbuf0_8.1-5 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 ufsutils_8.2-1 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -385,7 +459,10 @@ Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.8.2-1.dsc)
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
@@ -393,7 +470,6 @@ dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
dpkg-buildpackage
─────────────────
@@ -405,18 +481,17 @@ dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
dpkg-buildpackage: source version 3.8.2-1
-dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-bioc-limma-3.8.2
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: host architecture kfreebsd-i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -432,32 +507,26 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-limma-3.8.2
-dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
-dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.diff.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
- fakeroot debian/rules binary
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -467,23 +536,23 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -493,13 +562,13 @@ installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/sit
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
@@ -535,36 +604,25 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-limma_3.8.2-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../r-bioc-limma_3.8.2-1_kfreebsd-i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-limma-3.8.2
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1312
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-limma_3.8.2-1_amd64.changes:
-───────────────────────────────────
+Build finished at 20110602-1337
+r-bioc-limma_3.8.2-1_kfreebsd-i386.changes:
Format: 1.8
Date: Thu, 02 Jun 2011 13:07:58 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
-Architecture: source amd64
+Architecture: kfreebsd-i386
Version: 3.8.2-1
-Distribution: unstable
+Distribution: sid
Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
@@ -574,39 +632,30 @@ Changes:
.
* Initial release (closes: #628548).
Checksums-Sha1:
- a5543c9595c2f6990ccc5f560c601f0840bd3c9b 1045 r-bioc-limma_3.8.2-1.dsc
- 8424f7ce6d39355f2b410db4fc11c7ba67d65bed 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 1aee4cf6f887e704f27946fce20a345103899e07 2158 r-bioc-limma_3.8.2-1.diff.gz
- 7a9021d1a25139cd267b1cbe65c70f00f65f33f6 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ 0d16c58148b46399fe3fdcd28f643bff633e98d0 1399056 r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
Checksums-Sha256:
- 48beab63b46f6822f687cb19301be159bd18b9749791bb6ee975a9b98d96c677 1045 r-bioc-limma_3.8.2-1.dsc
- 9a824792349de351a6623102feb5c2f4bc3642215496eb3422a78938422c970f 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 6f5a543511b1b3d29d68e2dbf4aa48c1371fa0af2b9f9d40272132f629f6b94f 2158 r-bioc-limma_3.8.2-1.diff.gz
- e00c45565d2296ad3c74e6364d350f488e2bf5d49845694739db00cdcab61a02 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ 6adb287a77333fbf5a55e39de428796513b7bd2e87c451bd5a970c95b7dd9911 1399056 r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
Files:
- 2944af4b5a4729edf5ec047d3f06edb1 1045 gnu-r optional r-bioc-limma_3.8.2-1.dsc
- 3ee3f6366c152f599dbd8bedefded85b 916654 gnu-r optional r-bioc-limma_3.8.2.orig.tar.gz
- 63cf5d468f9d7468cf41bb22c4554915 2158 gnu-r optional r-bioc-limma_3.8.2-1.diff.gz
- b5de0e25504dcc8ed7abb73be130c3d8 1395084 gnu-r optional r-bioc-limma_3.8.2-1_amd64.deb
+ c38875ab051a97d38b7f1c188b64043d 1399056 gnu-r optional r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_amd64.deb
-──────────────────────────────
+r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
+──────────────────────────────────────
new debian package, version 2.0.
- size 1395084 bytes: control archive= 1509 bytes.
- 769 bytes, 16 lines control
+ size 1399056 bytes: control archive= 1515 bytes.
+ 777 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
Version: 3.8.2-1
- Architecture: amd64
+ Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1656
- Depends: libc6 (>= 2.2.5), r-base-core (>= 2.13.0~)
+ Installed-Size: 1626
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -618,62 +667,64 @@ r-bioc-limma_3.8.2-1_amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 172718 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3733 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 384 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 446442 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3251 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1302 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/paths.rds
--rwxr-xr-x root/root 1230 2011-06-02 13:12 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1872 2011-06-02 13:12 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5946 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 503 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2853 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1049 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 1005 2011-06-02 13:12 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10856 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9360 2011-06-02 13:12 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 687780 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 13:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2116 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 161 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-02 13:37 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1006 2011-06-02 13:37 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1050 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5522 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2853 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8076 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172737 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3732 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84633 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-06-02 13:37 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1348 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 452022 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3261 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2361 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-02 13:37 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-02 13:37 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-06-02 13:37 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2116 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Finished │
└──────────────────────────────────────────────────────────────────────────────┘
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1307021680-5194/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB
Reading package lists...
Building dependency tree...
Reading state information...
@@ -682,31 +733,24 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
- gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
+ gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
- liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
- libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data*
- libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* sbuild-build-depends-core-dummy*
- sbuild-build-depends-r-bioc-limma-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
- ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded.
-After this operation, 129 MB disk space will be freed.
-(Reading database ... 14745 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-limma-dummy ...
+ libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
+ libice6* libjpeg62* libjpeg62-dev* liblapack-dev* liblapack3gf* libmagic1*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3*
+ libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
+ libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
+ libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
+ libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
+ libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 72 to remove and 0 not upgraded.
+After this operation, 112 MB disk space will be freed.
+(Reading database ... 16049 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
Removing dpatch ...
Purging configuration files for dpatch ...
Removing file ...
@@ -732,6 +776,8 @@ Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
Removing gfortran-4.6 ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
@@ -749,8 +795,6 @@ Removing libthai0 ...
Purging configuration files for libthai0 ...
Removing libdatrie1 ...
Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libgfortran3 ...
@@ -785,8 +829,6 @@ Purging configuration files for libpipeline1 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
-Removing libpng12-0 ...
-Purging configuration files for libpng12-0 ...
Removing libthai-data ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
@@ -811,7 +853,6 @@ Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
@@ -823,6 +864,7 @@ Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
@@ -831,18 +873,19 @@ Removing zlib1g-dev ...
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 5944
-Build-Time: 9
-Distribution: unstable
-Install-Time: 90
-Job: r-bioc-limma_3.8.2-1.dsc
+Architecture: kfreebsd-i386
+Build-Space: 4768
+Build-Time: 29
+Distribution: sid
+Install-Time: 127
+Job: r-bioc-limma_3.8.2-1
Package: r-bioc-limma
-Package-Time: 102
+Package-Time: 173
Source-Version: 3.8.2-1
-Space: 5944
+Space: 4768
Status: successful
Version: 3.8.2-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1312
-Build needed 00:01:42, 5944k disc space
+Finished at 20110602-1337
+Build needed 00:02:53, 4768k disc space
+Signature with key 'BB0A10AB' requested:
diff --git a/mips.log b/mips.log
new file mode 100644
index 0000000..7132c25
--- /dev/null
+++ b/mips.log
@@ -0,0 +1,1741 @@
+From buildd2 at lucatelli.debian.org Thu Jun 02 13:37:56 2011
+Return-path: <buildd2 at lucatelli.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
+ id 1QS85z-00080S-TN
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:56 +0000
+Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=lucatelli.debian.org,
+ EMAIL=hostmaster at lucatelli.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
+ id 1QS85x-0007CG-Sn
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:54 +0000
+Received: from buildd2 by lucatelli.debian.org with local (Exim 4.69)
+ (envelope-from <buildd2 at lucatelli.debian.org>) id 1QS85o-0003tn-2C
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:44 +0000
+From: buildd on lucatelli <buildd2 at lucatelli.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on mips (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QS85o-0003tn-2C at lucatelli.debian.org>
+Date: Thu, 02 Jun 2011 13:37:44 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (mips) 02 Jun 2011 13:27 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Source Version: 3.8.2-1
+Architecture: mips
+Get:1 http://mirror-ubc.debian.org unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [5270 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5270 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [49.7 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [92.2 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [7147 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [54.3 kB]
+Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
+Get:10 http://mirror-ubc.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
+Get:13 http://incoming.debian.org unstable/main mips Packages [7147 kB]
+Get:14 http://incoming.debian.org unstable/contrib mips Packages [54.3 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [35.2 kB]
+Get:18 http://incoming.debian.org Packages [360 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 25.9 MB in 1min 13s (351 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 1s (673 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.2)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-2)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libreadline6
+ libstdc++6 libstdc++6-4.6-dev
+9 upgraded, 75 newly installed, 0 to remove and 37 not upgraded.
+Need to get 67.6 MB of archives.
+After this operation, 127 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6 mips 6.2-2 [146 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 mips 4.6.0-10 [26.1 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.0-10 [131 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 mips 4.6.0-10 [308 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.0-10 [3735 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.0-10 [1723 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 mips 4.6.0-10 [6285 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.0-10 [4044 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.0-10 [69.5 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.2 [210 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-5 [1203 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-2 [35.5 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-1 [1005 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.04-5+b1 [239 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.04-5+b1 [49.9 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-3 [262 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-2+b1 [837 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.6-1 [1509 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-4 [415 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-3 [2037 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7 [135 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.4-1 [399 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-2.2 [283 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-2.2 [332 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.0-10 [231 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.0-10 [4364 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.0-5 [1132 B]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2-8 [210 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2-8 [257 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-6 [37.9 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.21.8-1 [347 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.44-2 [176 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-1 [16.4 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-1 [22.0 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-2 [37.3 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.3-1 [858 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-2 [14.3 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-2 [9192 B]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-1 [30.5 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6 [959 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-2 [26.2 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-1 [49.9 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62 mips 6b1-1 [94.5 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62-dev mips 6b1-1 [207 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.0-4 [4548 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.0-4 [5191 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-1 [509 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-1 [41.5 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-2 [56.5 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.28.3-6 [420 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-3 [113 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-3 [316 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.44-2 [279 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-2 [269 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-2 [880 B]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-1 [27.9 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-1 [191 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-1 [48.0 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-1 [16.4 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-1 [188 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-3 [354 kB]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-4 [202 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.9-2 [1595 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.9-2 [1182 kB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.13.0-2 [14.5 MB]
+Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 67.6 MB in 11s (5861 kB/s)
+(Reading database ... 11390 files and directories currently installed.)
+Preparing to replace libreadline6 6.2-1 (using .../libreadline6_6.2-2_mips.deb) ...
+Unpacking replacement libreadline6 ...
+Setting up libreadline6 (6.2-2) ...
+(Reading database ... 11390 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-10_mips.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-10_mips.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-10) ...
+(Reading database ... 11389 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-10_mips.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-10) ...
+(Reading database ... 11389 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-10_mips.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-10_mips.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-10_mips.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-10_mips.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-10_mips.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-10) ...
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 11389 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mips.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_mips.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_mips.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_mips.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mips.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_mips.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mips.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_mips.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_mips.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mips.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mips.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mips.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_mips.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mips.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mips.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mips.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mips.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_mips.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_mips.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mips.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_mips.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_mips.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mips.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mips.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mips.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_mips.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mips.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_mips.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mips.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mips.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mips.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mips.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mips.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mips.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mips.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mips.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mips.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mips.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mips.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mips.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_mips.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_mips.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mips.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mips.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mips.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mips.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mips.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mips.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mips.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mips.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mips.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mips.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mips.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mips.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mips.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_mips.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-4_mips.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mips.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mips.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_mips.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Setting up libgomp1 (4.6.0-10) ...
+Setting up cpp-4.6 (4.6.0-10) ...
+Setting up gcc-4.6 (4.6.0-10) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-2) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-10) ...
+Setting up gfortran-4.6 (4.6.0-10) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Setting up libstdc++6-4.6-dev (4.6.0-10) ...
+Setting up g++-4.6 (4.6.0-10) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
+Toolchain package versions: binutils_2.21.51.20110421-3 dpkg-dev_1.16.0.2 g++-4.4_4.4.6-2 g++-4.6_4.6.0-10 gcc-4.4_4.4.6-2 gcc-4.6_4.6.0-10 libc6-dev_2.13-2 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-4
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-2 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-2 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4_4.4.6-2 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-18 libdb4.8_4.8.30-7 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd2/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture mips
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
+installing to /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../r-bioc-limma_3.8.2-1_mips.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110602-1337
+
+r-bioc-limma_3.8.2-1_mips.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: mips
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ 9afc58723301c16837ae2d50792ba4655dd6fe26 1398086 r-bioc-limma_3.8.2-1_mips.deb
+Checksums-Sha256:
+ 35e4996be50a11653335e71f3d52d7e6453dfea32f360d714a69be47f8e0f8d0 1398086 r-bioc-limma_3.8.2-1_mips.deb
+Files:
+ df367a958cf2793778c83f3bd3fdafb6 1398086 gnu-r optional r-bioc-limma_3.8.2-1_mips.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_mips.deb
+─────────────────────────────
+
+ new debian package, version 2.0.
+ size 1398086 bytes: control archive= 1511 bytes.
+ 766 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: mips
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1676
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 13:34 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 13:34 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-02 13:34 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2011-06-02 13:35 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3737 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 384 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172729 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/limma.rdb
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6150 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3241 2011-06-02 13:35 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2361 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1342 2011-06-02 13:35 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 449874 2011-06-02 13:35 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1008 2011-06-02 13:34 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 687780 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 673 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 45616 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84633 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 9360 2011-06-02 13:36 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 2853 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1052 2011-06-02 13:34 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 503 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 5522 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 5946 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 161 2011-06-02 13:33 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2116 2011-06-02 13:33 ./usr/share/doc/r-bioc-limma/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mips-sbuild-ca6613af-65d7-485e-a5f2-5924db2262d8/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR
+Not cleaning session: cloned chroot in use
+Can't open average time db /var/lib/sbuild/avg-build-times
+Can't open average space db /var/lib/sbuild/avg-build-space
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mips
+Build-Space: 5080
+Build-Time: 231
+Distribution: sid
+Install-Time: 229
+Job: r-bioc-limma_3.8.2-1
+Package: r-bioc-limma
+Package-Time: 580
+Source-Version: 3.8.2-1
+Space: 5080
+Status: successful
+Version: 3.8.2-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110602-1337
+Build needed 00:09:40, 5080k disc space
+Signature with key 'F4C69470' requested:
+
+From buildd at mayer.debian.org Thu Jun 02 14:57:18 2011
+Return-path: <buildd at mayer.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1QS9Kn-0002UQ-ND
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:18 +0000
+Received: from mayer.debian.org ([140.211.166.78])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1QS9Kl-00019k-K8
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:16 +0000
+Received: from buildd by mayer.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at mayer.debian.org>) id 1QS9Ki-0004MO-B1
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:12 +0000
+From: buildd on mayer <buildd at mayer.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on mipsel (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QS9Ki-0004MO-B1 at mayer.debian.org>
+Date: Thu, 02 Jun 2011 14:57:12 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (mipsel) 02 Jun 2011 14:52 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Source Version: 3.8.2-1
+Architecture: mipsel
+Hit http://debian.oregonstate.edu sid InRelease
+Hit http://debian.oregonstate.edu sid/main Sources
+Hit http://debian.oregonstate.edu sid/contrib Sources
+Hit http://debian.oregonstate.edu sid/main mipsel Packages
+Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
+Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
+Hit http://debian.oregonstate.edu sid/main TranslationIndex
+Ign http://debian.oregonstate.edu sid/contrib Translation-en
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources
+Hit http://incoming.debian.org sid/contrib Sources
+Hit http://incoming.debian.org sid/main mipsel Packages
+Hit http://incoming.debian.org sid/contrib mipsel Packages
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 1s (741 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.2)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-4)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+debhelper: already installed (8.1.6 >= 8 is satisfied)
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
+ libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
+ libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ devscripts curl defoma gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp ess r-doc-info r-doc-pdf r-mathlib r-base-html
+ tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
+ libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
+ libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 58 newly installed, 0 to remove and 15 not upgraded.
+Need to get 0 B/42.1 MB of archives.
+After this operation, 98.3 MB of additional disk space will be used.
+Selecting previously deselected package ucf.
+(Reading database ... 12241 files and directories currently installed.)
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mipsel.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_mipsel.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_mipsel.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mipsel.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mipsel.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_mipsel.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mipsel.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mipsel.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mipsel.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mipsel.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mipsel.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mipsel.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_mipsel.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_mipsel.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mipsel.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mipsel.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mipsel.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mipsel.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mipsel.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mipsel.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mipsel.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_mipsel.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_mipsel.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_mipsel.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Processing triggers for man-db ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-10) ...
+Setting up gfortran-4.6 (4.6.0-10) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-4
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-3 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdevmapper1.02.1_2:1.02.63-3 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libudev0_168-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 module-init-tools_3.12-1 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 udev_168-2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture mipsel
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../r-bioc-limma_3.8.2-1_mipsel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110602-1456
+
+r-bioc-limma_3.8.2-1_mipsel.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: mipsel
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ 8d7ceca74471012a8fa7e0007e480d191902fd7e 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+Checksums-Sha256:
+ eea27353a6da5b2efc3ca142b982d098d9a625b2ca0a17011809ba896d740c34 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+Files:
+ 35d3a73acc9fbca7ad144743315168ef 1394492 gnu-r optional r-bioc-limma_3.8.2-1_mipsel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_mipsel.deb
+───────────────────────────────
+
+ new debian package, version 2.0.
+ size 1394492 bytes: control archive= 1510 bytes.
+ 768 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: mipsel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1676
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-02 14:55 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1010 2011-06-02 14:55 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1053 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5522 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2853 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172730 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3737 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84633 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-06-02 14:55 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1344 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 449906 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3252 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2361 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-06-02 14:55 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2116 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-79d9ad21-7925-4dc2-83b6-ba7403333e27/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ cdbs* dpatch* fontconfig* fontconfig-config* gfortran* gfortran-4.6*
+ libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1* libexpat1*
+ libfontconfig1* libfreetype6* libgfortran3* libice6* libjpeg62*
+ libjpeg62-dev* liblapack-dev* liblapack3gf* libncurses5-dev* libpango1.0-0*
+ libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpixman-1-0*
+ libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
+ libthai-data* libthai0* libtiff4* libx11-6* libx11-data* libxau6*
+ libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
+ libxrender1* libxss1* libxt6* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 58 to remove and 15 not upgraded.
+After this operation, 98.3 MB disk space will be freed.
+(Reading database ... 14873 files and directories currently installed.)
+Removing r-base-dev ...
+Removing cdbs ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libfontconfig1 ...
+Purging configuration files for libfontconfig1 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing gfortran ...
+Removing gfortran-4.6 ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libbz2-dev ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing libexpat1 ...
+Purging configuration files for libexpat1 ...
+Removing libfreetype6 ...
+Purging configuration files for libfreetype6 ...
+Removing libgfortran3 ...
+Purging configuration files for libgfortran3 ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libjpeg62-dev ...
+Removing libjpeg62 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
+Removing libncurses5-dev ...
+Removing libpaper-utils ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libpcre3-dev ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libpng12-dev ...
+Removing libpng12-0 ...
+Purging configuration files for libpng12-0 ...
+Removing libthai-data ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ttf-dejavu-core ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
+Processing triggers for man-db ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mipsel
+Build-Space: 5076
+Build-Time: 112
+Distribution: sid
+Install-Time: 92
+Job: r-bioc-limma_3.8.2-1
+Package: r-bioc-limma
+Package-Time: 223
+Source-Version: 3.8.2-1
+Space: 5076
+Status: successful
+Version: 3.8.2-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110602-1456
+Build needed 00:03:43, 5076k disc space
+Signature with key '68D1B022' requested:
+
diff --git a/mipsel.log b/mipsel.log
new file mode 100644
index 0000000..dcc5e08
--- /dev/null
+++ b/mipsel.log
@@ -0,0 +1,834 @@
+From buildd at mayer.debian.org Thu Jun 02 14:57:18 2011
+Return-path: <buildd at mayer.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1QS9Kn-0002UQ-ND
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:18 +0000
+Received: from mayer.debian.org ([140.211.166.78])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1QS9Kl-00019k-K8
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:16 +0000
+Received: from buildd by mayer.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at mayer.debian.org>) id 1QS9Ki-0004MO-B1
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:12 +0000
+From: buildd on mayer <buildd at mayer.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on mipsel (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1QS9Ki-0004MO-B1 at mayer.debian.org>
+Date: Thu, 02 Jun 2011 14:57:12 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (mipsel) 02 Jun 2011 14:52 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Source Version: 3.8.2-1
+Architecture: mipsel
+Hit http://debian.oregonstate.edu sid InRelease
+Hit http://debian.oregonstate.edu sid/main Sources
+Hit http://debian.oregonstate.edu sid/contrib Sources
+Hit http://debian.oregonstate.edu sid/main mipsel Packages
+Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
+Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
+Hit http://debian.oregonstate.edu sid/main TranslationIndex
+Ign http://debian.oregonstate.edu sid/contrib Translation-en
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources
+Hit http://incoming.debian.org sid/contrib Sources
+Hit http://incoming.debian.org sid/main mipsel Packages
+Hit http://incoming.debian.org sid/contrib mipsel Packages
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 1s (741 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.2)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.2)
+sysvinit: already installed (2.88dsf-13.2)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-4)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+debhelper: already installed (8.1.6 >= 8 is satisfied)
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
+ libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
+ libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ devscripts curl defoma gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp ess r-doc-info r-doc-pdf r-mathlib r-base-html
+ tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
+ libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
+ libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
+ liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 58 newly installed, 0 to remove and 15 not upgraded.
+Need to get 0 B/42.1 MB of archives.
+After this operation, 98.3 MB of additional disk space will be used.
+Selecting previously deselected package ucf.
+(Reading database ... 12241 files and directories currently installed.)
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mipsel.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mipsel.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_mipsel.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_mipsel.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mipsel.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_mipsel.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mipsel.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_mipsel.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mipsel.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mipsel.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mipsel.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mipsel.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mipsel.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mipsel.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mipsel.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mipsel.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mipsel.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_mipsel.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_mipsel.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mipsel.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mipsel.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mipsel.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mipsel.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mipsel.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mipsel.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mipsel.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mipsel.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_mipsel.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_mipsel.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mipsel.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_mipsel.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Processing triggers for man-db ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-10) ...
+Setting up gfortran-4.6 (4.6.0-10) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-4
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-3 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdevmapper1.02.1_2:1.02.63-3 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libudev0_168-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 module-init-tools_3.12-1 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 udev_168-2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture mipsel
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../r-bioc-limma_3.8.2-1_mipsel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110602-1456
+
+r-bioc-limma_3.8.2-1_mipsel.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: mipsel
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ 8d7ceca74471012a8fa7e0007e480d191902fd7e 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+Checksums-Sha256:
+ eea27353a6da5b2efc3ca142b982d098d9a625b2ca0a17011809ba896d740c34 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+Files:
+ 35d3a73acc9fbca7ad144743315168ef 1394492 gnu-r optional r-bioc-limma_3.8.2-1_mipsel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_mipsel.deb
+───────────────────────────────
+
+ new debian package, version 2.0.
+ size 1394492 bytes: control archive= 1510 bytes.
+ 768 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: mipsel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1676
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-02 14:55 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1010 2011-06-02 14:55 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1053 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5522 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2853 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 503 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172730 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3737 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84633 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-06-02 14:55 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1344 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 449906 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3252 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2361 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-06-02 14:55 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2116 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-79d9ad21-7925-4dc2-83b6-ba7403333e27/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ cdbs* dpatch* fontconfig* fontconfig-config* gfortran* gfortran-4.6*
+ libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1* libexpat1*
+ libfontconfig1* libfreetype6* libgfortran3* libice6* libjpeg62*
+ libjpeg62-dev* liblapack-dev* liblapack3gf* libncurses5-dev* libpango1.0-0*
+ libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpixman-1-0*
+ libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
+ libthai-data* libthai0* libtiff4* libx11-6* libx11-data* libxau6*
+ libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
+ libxrender1* libxss1* libxt6* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 58 to remove and 15 not upgraded.
+After this operation, 98.3 MB disk space will be freed.
+(Reading database ... 14873 files and directories currently installed.)
+Removing r-base-dev ...
+Removing cdbs ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libfontconfig1 ...
+Purging configuration files for libfontconfig1 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing gfortran ...
+Removing gfortran-4.6 ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libbz2-dev ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing libexpat1 ...
+Purging configuration files for libexpat1 ...
+Removing libfreetype6 ...
+Purging configuration files for libfreetype6 ...
+Removing libgfortran3 ...
+Purging configuration files for libgfortran3 ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libjpeg62-dev ...
+Removing libjpeg62 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
+Removing libncurses5-dev ...
+Removing libpaper-utils ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libpcre3-dev ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libpng12-dev ...
+Removing libpng12-0 ...
+Purging configuration files for libpng12-0 ...
+Removing libthai-data ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ttf-dejavu-core ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
+Processing triggers for man-db ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mipsel
+Build-Space: 5076
+Build-Time: 112
+Distribution: sid
+Install-Time: 92
+Job: r-bioc-limma_3.8.2-1
+Package: r-bioc-limma
+Package-Time: 223
+Source-Version: 3.8.2-1
+Space: 5076
+Status: successful
+Version: 3.8.2-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110602-1456
+Build needed 00:03:43, 5076k disc space
+Signature with key '68D1B022' requested:
+
diff --git a/powerpc.log b/powerpc.log
new file mode 100644
index 0000000..4d02ef0
--- /dev/null
+++ b/powerpc.log
@@ -0,0 +1,846 @@
+From buildd at porpora.debian.org Thu Jun 02 13:32:05 2011
+Return-path: <buildd at porpora.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at porpora.debian.org>)
+ id 1QS80L-0007Od-HS
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 13:32:05 +0000
+Received: from porpora.ynic.york.ac.uk ([144.32.168.78]
+ helo=porpora.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=porpora.debian.org, EMAIL=hostmaster at porpora.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at porpora.debian.org>)
+ id 1QS80K-00074V-BW; Thu, 02 Jun 2011 13:32:04 +0000
+Received: from buildd by porpora.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at porpora.debian.org>)
+ id 1QS80J-0004m0-Ku; Thu, 02 Jun 2011 13:32:03 +0000
+Message-Id: <E1QS80J-0004m0-Ku at porpora.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Thu, 2 Jun 2011 13:32:03 +0000
+From: buildd on porpora <buildd at porpora.debian.org>
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on powerpc (dist=sid)
+Key-Id: CDFA0A89
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on porpora.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (powerpc) 02 Jun 2011 13:28 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Source Version: 3.8.2-1
+Architecture: powerpc
+Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
+Get:2 http://ftp.uk.debian.org unstable/main Sources [5270 kB]
+Get:3 http://incoming.debian.org unstable InRelease [146 kB]
+Get:4 http://ftp.uk.debian.org unstable/contrib Sources [49.7 kB]
+Get:5 http://ftp.uk.debian.org unstable/non-free Sources [92.2 kB]
+Get:6 http://ftp.uk.debian.org unstable/main powerpc Packages [7269 kB]
+Ign http://incoming.debian.org InRelease
+Get:7 http://incoming.debian.org Release.gpg [836 B]
+Get:8 http://incoming.debian.org unstable/main Sources [5270 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib powerpc Packages [54.0 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://ftp.uk.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
+Get:13 http://incoming.debian.org unstable/main powerpc Packages [7269 kB]
+Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [54.0 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [35.2 kB]
+Get:18 http://incoming.debian.org Packages [360 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 26.2 MB in 37s (694 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 2s (421 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4.0.1)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.7)
+sysvinit: already installed (2.88dsf-13.7)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-4)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+The following extra packages will be installed:
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+0 upgraded, 75 newly installed, 0 to remove and 1 not upgraded.
+Need to get 50.9 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.2 [209 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.21-5 [1189 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-2 [37.3 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-1 [1020 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 powerpc 5.04-5+b1 [240 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main file powerpc 5.04-5+b1 [49.9 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-3 [141 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-3 [258 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-2+b1 [853 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.6-1 [1611 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-1 [128 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-4 [422 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-3 [2046 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7 [139 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.4-1 [403 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-2.2 [284 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-2.2 [334 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.0-10 [281 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.0-10 [5257 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.0-5 [1130 B]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf powerpc 1.2-8 [195 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev powerpc 1.2-8 [215 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-6 [38.5 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.21.8-1 [349 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.44-2 [179 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-1 [16.7 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-1 [22.4 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-2 [41.0 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.3-1 [874 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-2 [15.3 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-2 [9286 B]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-1 [31.5 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6 [952 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-2 [26.4 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-1 [54.2 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 powerpc 6b1-1 [93.6 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62-dev powerpc 6b1-1 [199 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.0-4 [3908 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.0-4 [4189 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-1 [489 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-1 [41.3 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-2 [58.1 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.28.3-6 [432 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-3 [114 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-3 [315 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.44-2 [271 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-2 [258 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-2 [882 B]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-1 [29.1 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-1 [200 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-1 [49.1 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-1 [16.5 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-1 [196 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main zip powerpc 3.0-3 [343 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main unzip powerpc 6.0-4 [192 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.9-2 [1622 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.9-2 [1179 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main r-base-core powerpc 2.13.0-2 [14.9 MB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 50.9 MB in 14s (3481 kB/s)
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 11071 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_powerpc.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_powerpc.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_powerpc.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_powerpc.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_powerpc.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_powerpc.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_powerpc.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_powerpc.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_powerpc.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_powerpc.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_powerpc.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_powerpc.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_powerpc.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_powerpc.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_powerpc.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_powerpc.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_powerpc.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_powerpc.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_powerpc.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_powerpc.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_powerpc.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_powerpc.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_powerpc.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_powerpc.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_powerpc.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_powerpc.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_powerpc.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_powerpc.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_powerpc.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_powerpc.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_powerpc.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_powerpc.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_powerpc.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_powerpc.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_powerpc.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_powerpc.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_powerpc.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_powerpc.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_powerpc.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_powerpc.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_powerpc.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_powerpc.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_powerpc.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_powerpc.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_powerpc.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_powerpc.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_powerpc.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_powerpc.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_powerpc.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_powerpc.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_powerpc.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_powerpc.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_powerpc.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_powerpc.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_powerpc.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_powerpc.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_powerpc.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../unzip_6.0-4_powerpc.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_powerpc.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_powerpc.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_powerpc.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-2) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-10) ...
+Setting up gfortran-4.6 (4.6.0-10) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1
+Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libc6-ppc64_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b2 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libtext-charwidth-perl_0.04-6+b3 libtext-iconv-perl_1.7-2+b2 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+User Environment
+────────────────
+
+HOME=/home/buildd
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-powerpc-sbuild-cb29affd-46da-4a5f-aa4a-db3f618281f7
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+TERM=screen
+USER=buildd
+USERNAME=buildd
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture powerpc
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org> >../r-bioc-limma_3.8.2-1_powerpc.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110602-1331
+
+r-bioc-limma_3.8.2-1_powerpc.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: powerpc
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: powerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ 39c84885b272a9ad2486c7a5eecf42f6fe5f8585 1398348 r-bioc-limma_3.8.2-1_powerpc.deb
+Checksums-Sha256:
+ 0f0ab4b086e1168e8d440961f354f87f90263e5ae25c2c7ab31c9ec5d7cfab46 1398348 r-bioc-limma_3.8.2-1_powerpc.deb
+Files:
+ 970e6662b091455f2700488c2e2b6bfb 1398348 gnu-r optional r-bioc-limma_3.8.2-1_powerpc.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_powerpc.deb
+────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1398348 bytes: control archive= 1508 bytes.
+ 771 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: powerpc
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1676
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2116 2011-06-02 13:31 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 161 2011-06-02 13:31 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8408 2011-06-02 13:31 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-06-02 13:31 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-06-02 13:31 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3740 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 172733 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 384 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 1011 2011-06-02 13:31 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 9360 2011-06-02 13:31 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1054 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 217 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 2853 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5522 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 503 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6150 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1347 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3257 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2361 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 450409 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 45616 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84633 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 687780 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 673 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 1872 2011-06-02 13:31 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2011-06-02 13:31 ./usr/lib/R/site-library/limma/CITATION
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-cb29affd-46da-4a5f-aa4a-db3f618281f7/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: powerpc
+Build-Space: 5080
+Build-Time: 33
+Distribution: sid
+Install-Time: 129
+Job: r-bioc-limma_3.8.2-1
+Package: r-bioc-limma
+Package-Time: 214
+Source-Version: 3.8.2-1
+Space: 5080
+Status: successful
+Version: 3.8.2-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110602-1331
+Build needed 00:03:34, 5080k disc space
+Signature with key 'CDFA0A89' requested:
diff --git a/s390.log b/s390.log
new file mode 100644
index 0000000..27d8a84
--- /dev/null
+++ b/s390.log
@@ -0,0 +1,874 @@
+From buildd at zandonai.debian.org Thu Jun 02 14:11:58 2011
+Return-path: <buildd at zandonai.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1QS8cw-00052t-G2
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 14:11:58 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1QS8cv-0005dc-P4; Thu, 02 Jun 2011 14:11:57 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1QS8cv-00028Q-F8; Thu, 02 Jun 2011 14:11:57 +0000
+Message-Id: <E1QS8cv-00028Q-F8 at zandonai.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Thu, 2 Jun 2011 14:11:57 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on s390 (dist=sid)
+Key-Id: 9BD94C88
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (s390) 02 Jun 2011 14:09 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Source Version: 3.8.2-1
+Architecture: s390
+Get:1 http://ftp.de.debian.org unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [5268 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5270 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [49.7 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [92.2 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7160 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [53.0 kB]
+Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://ftp.de.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
+Get:13 http://incoming.debian.org unstable/main s390 Packages [7170 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390 Packages [53.0 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.8 kB]
+Get:18 http://incoming.debian.org Packages [370 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 26.0 MB in 26s (978 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 2s (448 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.7)
+sysvinit: already installed (2.88dsf-13.7)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-4)
+gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 75 newly installed, 0 to remove and 7 not upgraded.
+Need to get 61.8 MB of archives.
+After this operation, 117 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390 4.6.0-10 [30.3 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.0-10 [131 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390 4.6.0-10 [368 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.0-10 [3814 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.0-10 [1674 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390 4.6.0-10 [5865 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.0-10 [4174 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390 1:4.6.0-10 [31.1 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.2 [208 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-5 [1158 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-2 [38.9 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-1 [1017 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5+b1 [243 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5+b1 [50.1 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-3 [142 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-3 [262 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-2+b1 [873 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.6-1 [1639 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-4 [431 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7 [137 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.4-1 [416 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-2.2 [285 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-2.2 [335 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.0-10 [296 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.0-10 [4508 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.0-5 [1122 B]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2-8 [192 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2-8 [206 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-6 [36.9 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.21.8-1 [357 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.44-2 [181 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-1 [16.8 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-1 [23.1 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-2 [47.0 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.3-1 [885 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-2 [16.7 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-2 [9466 B]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-1 [30.6 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6 [952 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-2 [27.9 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-1 [56.6 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libjpeg62 s390 6b1-1 [95.2 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libjpeg62-dev s390 6b1-1 [197 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.0-4 [1661 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.0-4 [1859 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-1 [504 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-1 [43.5 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-2 [59.6 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.28.3-6 [443 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-3 [113 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-3 [308 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.44-2 [271 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-2 [257 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-2 [878 B]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-1 [29.9 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-1 [206 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-1 [52.2 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-1 [16.5 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-1 [205 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-3 [342 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-4 [192 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.9-2 [1632 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.9-2 [1196 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.13.0-2 [14.9 MB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 61.8 MB in 18s (3365 kB/s)
+(Reading database ... 10552 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.0-8 (using .../libgomp1_4.6.0-10_s390.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.0-8 (using .../gcc-4.6-base_4.6.0-10_s390.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.0-10) ...
+(Reading database ... 10551 files and directories currently installed.)
+Preparing to replace libstdc++6 4.6.0-8 (using .../libstdc++6_4.6.0-10_s390.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.0-10) ...
+(Reading database ... 10551 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.0-8 (using .../cpp-4.6_4.6.0-10_s390.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.0-8 (using .../libstdc++6-4.6-dev_4.6.0-10_s390.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.0-8 (using .../g++-4.6_4.6.0-10_s390.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.0-8 (using .../gcc-4.6_4.6.0-10_s390.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libgcc1 1:4.6.0-8 (using .../libgcc1_1%3a4.6.0-10_s390.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.0-10) ...
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10551 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_s390.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_s390.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_s390.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_s390.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_s390.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_s390.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_s390.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_s390.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_s390.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_s390.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_s390.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_s390.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_s390.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_s390.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_s390.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_s390.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_s390.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_s390.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_s390.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_s390.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_s390.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_s390.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_s390.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_s390.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_s390.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_s390.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_s390.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_s390.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_s390.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_s390.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_s390.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_s390.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_s390.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_s390.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_s390.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_s390.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_s390.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_s390.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_s390.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_s390.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_s390.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_s390.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_s390.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_s390.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_s390.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_s390.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_s390.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_s390.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_s390.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_s390.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_s390.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_s390.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_s390.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_s390.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_s390.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-4_s390.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_s390.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_s390.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_s390.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Setting up libgomp1 (4.6.0-10) ...
+Setting up cpp-4.6 (4.6.0-10) ...
+Setting up gcc-4.6 (4.6.0-10) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-2) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-10) ...
+Setting up gfortran-4.6 (4.6.0-10) ...
+Setting up gfortran (4:4.6.0-5) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Setting up libstdc++6-4.6-dev (4.6.0-10) ...
+Setting up g++-4.6 (4.6.0-10) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-s390x s390 (s390x)
+Toolchain package versions: binutils_2.21.51.20110421-6 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1
+Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-6 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture s390
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_s390.deb'.
+ dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.8.2-1_s390.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110602-1411
+
+r-bioc-limma_3.8.2-1_s390.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: s390
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ 77c1be36fa14fb21f32e3f471a4bb4abab70402f 1397198 r-bioc-limma_3.8.2-1_s390.deb
+Checksums-Sha256:
+ 6126b84c0769847f32aca1567759ba1ee141c03b9519e5dc2c162c8bff1ae86b 1397198 r-bioc-limma_3.8.2-1_s390.deb
+Files:
+ c9ee439ce9b571b587c74ec70589c9f3 1397198 gnu-r optional r-bioc-limma_3.8.2-1_s390.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_s390.deb
+─────────────────────────────
+
+ new debian package, version 2.0.
+ size 1397198 bytes: control archive= 1508 bytes.
+ 768 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: s390
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1676
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9360 2011-06-02 14:11 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 172729 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3739 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-06-02 14:11 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-06-02 14:11 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8492 2011-06-02 14:11 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1335 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 449811 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3249 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2361 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6150 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1872 2011-06-02 14:11 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 687780 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45616 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84633 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 1004 2011-06-02 14:11 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 503 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 217 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5522 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2853 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1049 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5946 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2011-06-02 14:11 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-02 14:11 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2116 2011-06-02 14:11 ./usr/share/doc/r-bioc-limma/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390-sbuild-25d119dc-d614-47ce-b3a7-c690c0ae051e/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390
+Build-Space: 5080
+Build-Time: 15
+Distribution: sid
+Install-Time: 68
+Job: r-bioc-limma_3.8.2-1
+Package: r-bioc-limma
+Package-Time: 118
+Source-Version: 3.8.2-1
+Space: 5080
+Status: successful
+Version: 3.8.2-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110602-1411
+Build needed 00:01:58, 5080k disc space
+Signature with key '9BD94C88' requested:
diff --git a/sparc.log b/sparc.log
new file mode 100644
index 0000000..26db80b
--- /dev/null
+++ b/sparc.log
@@ -0,0 +1,860 @@
+From buildd at lebrun.debian.org Thu Jun 02 15:31:49 2011
+Return-path: <buildd at lebrun.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
+ id 1QS9sD-0006v1-KY
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 15:31:49 +0000
+Received: from lebrun.debian.org ([193.198.184.10])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
+ id 1QS9sC-000831-QQ
+ for logs at buildd.debian.org; Thu, 02 Jun 2011 15:31:48 +0000
+Received: from buildd by lebrun.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at lebrun.debian.org>)
+ id 1QS9sC-00020h-1g; Thu, 02 Jun 2011 15:31:48 +0000
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
+Date: Thu, 2 Jun 2011 15:31:47 +0000
+From: buildd on lebrun <buildd at lebrun.debian.org>
+To: logs at buildd.debian.org,buildd-admin at lebrun.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.2-1 on sparc (dist=sid)
+Key-Id: 81587D01
+Message-Id: <E1QS9sC-00020h-1g at lebrun.debian.org>
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lebrun.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.8.2-1 (sparc) 02 Jun 2011 15:26 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.8.2-1
+Source Version: 3.8.2-1
+Architecture: sparc
+Get:1 http://debian.carnet.hr unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://debian.carnet.hr unstable/main Sources [5270 kB]
+Get:4 http://debian.carnet.hr unstable/contrib Sources [49.7 kB]
+Ign http://incoming.debian.org InRelease
+Get:5 http://incoming.debian.org Release.gpg [836 B]
+Get:6 http://incoming.debian.org unstable/main Sources [5270 kB]
+Get:7 http://debian.carnet.hr unstable/non-free Sources [92.2 kB]
+Get:8 http://debian.carnet.hr unstable/main sparc Packages [7207 kB]
+Get:9 http://debian.carnet.hr unstable/contrib sparc Packages [54.0 kB]
+Ign http://debian.carnet.hr unstable/contrib TranslationIndex
+Get:10 http://debian.carnet.hr unstable/main TranslationIndex [2264 B]
+Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
+Get:13 http://incoming.debian.org unstable/main sparc Packages [7207 kB]
+Get:14 http://incoming.debian.org unstable/contrib sparc Packages [54.0 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Hit http://incoming.debian.org unstable/main TranslationIndex
+Get:15 http://incoming.debian.org Release [1604 B]
+Get:16 http://incoming.debian.org Sources [36.8 kB]
+Get:17 http://incoming.debian.org Packages [370 kB]
+Ign http://debian.carnet.hr unstable/contrib Translation-en
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 26.0 MB in 28s (927 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Need to get 921 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
+Fetched 921 kB in 1s (600 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.22+b1)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4.0.1)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.41.12-4)
+findutils: already installed (4.4.2-1+b2)
+grep: already installed (2.8-2)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.12.3-7)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.7)
+sysvinit: already installed (2.88dsf-13.7)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.13-4)
+libc6-dev-sparc64: already installed (2.13-4)
+gcc: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.1.6
+cdbs: missing
+r-base-dev: missing
+Using default version 2.13.0-2
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.4 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.4-multilib gfortran-4.4-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.4 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
+Need to get 49.0 MB of archives.
+After this operation, 116 MB of additional disk space will be used.
+Get:1 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.2 [205 kB]
+Get:2 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.21-5 [1152 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.0-2 [35.9 kB]
+Get:4 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.0.2-1 [1013 kB]
+Get:5 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5+b1 [239 kB]
+Get:6 http://debian.carnet.hr/debian/ unstable/main file sparc 5.04-5+b1 [49.6 kB]
+Get:7 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-3 [140 kB]
+Get:8 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-3 [265 kB]
+Get:9 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-2+b1 [840 kB]
+Get:10 http://debian.carnet.hr/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:11 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:12 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.6-1 [1556 kB]
+Get:13 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
+Get:14 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-4 [424 kB]
+Get:15 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-3 [2006 kB]
+Get:16 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:17 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:18 http://debian.carnet.hr/debian/ unstable/main debhelper all 8.1.6 [557 kB]
+Get:19 http://debian.carnet.hr/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
+Get:20 http://debian.carnet.hr/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:21 http://debian.carnet.hr/debian/ unstable/main libexpat1 sparc 2.0.1-7 [131 kB]
+Get:22 http://debian.carnet.hr/debian/ unstable/main libfreetype6 sparc 2.4.4-1 [386 kB]
+Get:23 http://debian.carnet.hr/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:24 http://debian.carnet.hr/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
+Get:25 http://debian.carnet.hr/debian/ unstable/main libfontconfig1 sparc 2.8.0-2.2 [277 kB]
+Get:26 http://debian.carnet.hr/debian/ unstable/main fontconfig sparc 2.8.0-2.2 [333 kB]
+Get:27 http://debian.carnet.hr/debian/ unstable/main libgfortran3 sparc 4.6.0-10 [261 kB]
+Get:28 http://debian.carnet.hr/debian/ unstable/main gfortran-4.4 sparc 4.4.6-3 [3474 kB]
+Get:29 http://debian.carnet.hr/debian/ unstable/main gfortran sparc 4:4.4.5-9 [1122 B]
+Get:30 http://debian.carnet.hr/debian/ unstable/main libblas3gf sparc 1.2-8 [200 kB]
+Get:31 http://debian.carnet.hr/debian/ unstable/main libblas-dev sparc 1.2-8 [209 kB]
+Get:32 http://debian.carnet.hr/debian/ unstable/main libbz2-dev sparc 1.0.5-6 [36.6 kB]
+Get:33 http://debian.carnet.hr/debian/ unstable/main libpixman-1-0 sparc 0.21.8-1 [362 kB]
+Get:34 http://debian.carnet.hr/debian/ unstable/main libpng12-0 sparc 1.2.44-2 [174 kB]
+Get:35 http://debian.carnet.hr/debian/ unstable/main libxau6 sparc 1:1.0.6-1 [15.9 kB]
+Get:36 http://debian.carnet.hr/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-1 [21.7 kB]
+Get:37 http://debian.carnet.hr/debian/ unstable/main libxcb1 sparc 1.7-2 [40.8 kB]
+Get:38 http://debian.carnet.hr/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
+Get:39 http://debian.carnet.hr/debian/ unstable/main libx11-6 sparc 2:1.4.3-1 [842 kB]
+Get:40 http://debian.carnet.hr/debian/ unstable/main libxcb-render0 sparc 1.7-2 [15.2 kB]
+Get:41 http://debian.carnet.hr/debian/ unstable/main libxcb-shm0 sparc 1.7-2 [9122 B]
+Get:42 http://debian.carnet.hr/debian/ unstable/main libxrender1 sparc 1:0.9.6-1 [28.6 kB]
+Get:43 http://debian.carnet.hr/debian/ unstable/main libcairo2 sparc 1.10.2-6 [928 kB]
+Get:44 http://debian.carnet.hr/debian/ unstable/main libdatrie1 sparc 0.2.4-2 [25.1 kB]
+Get:45 http://debian.carnet.hr/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
+Get:46 http://debian.carnet.hr/debian/ unstable/main libice6 sparc 2:1.0.7-1 [50.7 kB]
+Get:47 http://debian.carnet.hr/debian/ unstable/main libjpeg62 sparc 6b1-1 [87.1 kB]
+Get:48 http://debian.carnet.hr/debian/ unstable/main libjpeg62-dev sparc 6b1-1 [191 kB]
+Get:49 http://debian.carnet.hr/debian/ unstable/main liblapack3gf sparc 3.3.0-4 [3978 kB]
+Get:50 http://debian.carnet.hr/debian/ unstable/main liblapack-dev sparc 3.3.0-4 [4300 kB]
+Get:51 http://debian.carnet.hr/debian/ unstable/main libncurses5-dev sparc 5.9-1 [481 kB]
+Get:52 http://debian.carnet.hr/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
+Get:53 http://debian.carnet.hr/debian/ unstable/main libthai0 sparc 0.1.15-1 [41.1 kB]
+Get:54 http://debian.carnet.hr/debian/ unstable/main libxft2 sparc 2.2.0-2 [54.8 kB]
+Get:55 http://debian.carnet.hr/debian/ unstable/main libpango1.0-0 sparc 1.28.3-6 [414 kB]
+Get:56 http://debian.carnet.hr/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
+Get:57 http://debian.carnet.hr/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
+Get:58 http://debian.carnet.hr/debian/ unstable/main libpcrecpp0 sparc 8.12-3 [112 kB]
+Get:59 http://debian.carnet.hr/debian/ unstable/main libpcre3-dev sparc 8.12-3 [312 kB]
+Get:60 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
+Get:61 http://debian.carnet.hr/debian/ unstable/main libpng12-dev sparc 1.2.44-2 [265 kB]
+Get:62 http://debian.carnet.hr/debian/ unstable/main libreadline6-dev sparc 6.2-2 [258 kB]
+Get:63 http://debian.carnet.hr/debian/ unstable/main libreadline-dev sparc 6.2-2 [880 B]
+Get:64 http://debian.carnet.hr/debian/ unstable/main libsm6 sparc 2:1.2.0-1 [28.5 kB]
+Get:65 http://debian.carnet.hr/debian/ unstable/main libtiff4 sparc 3.9.5-1 [192 kB]
+Get:66 http://debian.carnet.hr/debian/ unstable/main libxext6 sparc 2:1.3.0-1 [47.3 kB]
+Get:67 http://debian.carnet.hr/debian/ unstable/main libxss1 sparc 1:1.2.1-1 [15.9 kB]
+Get:68 http://debian.carnet.hr/debian/ unstable/main libxt6 sparc 1:1.1.1-1 [184 kB]
+Get:69 http://debian.carnet.hr/debian/ unstable/main zip sparc 3.0-3 [335 kB]
+Get:70 http://debian.carnet.hr/debian/ unstable/main unzip sparc 6.0-4 [190 kB]
+Get:71 http://debian.carnet.hr/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:72 http://debian.carnet.hr/debian/ unstable/main tcl8.5 sparc 8.5.9-2 [1579 kB]
+Get:73 http://debian.carnet.hr/debian/ unstable/main tk8.5 sparc 8.5.9-2 [1142 kB]
+Get:74 http://debian.carnet.hr/debian/ unstable/main r-base-core sparc 2.13.0-2 [15.0 MB]
+Get:75 http://debian.carnet.hr/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 49.0 MB in 31s (1548 kB/s)
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10815 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_sparc.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_sparc.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_sparc.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-1_sparc.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_sparc.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_sparc.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_sparc.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_sparc.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_sparc.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_sparc.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_sparc.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_sparc.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_sparc.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_sparc.deb) ...
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_sparc.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_sparc.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_sparc.deb) ...
+Selecting previously deselected package gfortran-4.4.
+Unpacking gfortran-4.4 (from .../gfortran-4.4_4.4.6-3_sparc.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.4.5-9_sparc.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2-8_sparc.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2-8_sparc.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_sparc.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_sparc.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_sparc.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_sparc.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_sparc.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-2_sparc.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_sparc.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_sparc.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_sparc.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_sparc.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6_sparc.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_sparc.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-1_sparc.deb) ...
+Selecting previously deselected package libjpeg62.
+Unpacking libjpeg62 (from .../libjpeg62_6b1-1_sparc.deb) ...
+Selecting previously deselected package libjpeg62-dev.
+Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_sparc.deb) ...
+Selecting previously deselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_sparc.deb) ...
+Selecting previously deselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_sparc.deb) ...
+Selecting previously deselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_sparc.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-1_sparc.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-2_sparc.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_sparc.deb) ...
+Selecting previously deselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_sparc.deb) ...
+Selecting previously deselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_sparc.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_sparc.deb) ...
+Selecting previously deselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_sparc.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
+Selecting previously deselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_sparc.deb) ...
+Selecting previously deselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_sparc.deb) ...
+Selecting previously deselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_sparc.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_sparc.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-1_sparc.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_sparc.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_sparc.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_sparc.deb) ...
+Selecting previously deselected package zip.
+Unpacking zip (from .../archives/zip_3.0-3_sparc.deb) ...
+Selecting previously deselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-4_sparc.deb) ...
+Selecting previously deselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Selecting previously deselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_sparc.deb) ...
+Selecting previously deselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.9-2_sparc.deb) ...
+Selecting previously deselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.13.0-2_sparc.deb) ...
+Selecting previously deselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-2) ...
+Setting up man-db (2.6.0.2-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.6) ...
+Setting up cdbs (0.4.94) ...
+Setting up dpatch (2.0.31) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.4-1) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-2.2) ...
+Setting up libfontconfig1 (2.8.0-2.2) ...
+Setting up fontconfig (2.8.0-2.2) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libgfortran3 (4.6.0-10) ...
+Setting up gfortran-4.4 (4.4.6-3) ...
+Setting up gfortran (4:4.4.5-9) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2-8) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.5-6) ...
+Setting up libpixman-1-0 (0.21.8-1) ...
+Setting up libpng12-0 (1.2.44-2) ...
+Setting up libxau6 (1:1.0.6-1) ...
+Setting up libxdmcp6 (1:1.1.0-1) ...
+Setting up libxcb1 (1.7-2) ...
+Setting up libx11-data (2:1.4.3-1) ...
+Setting up libx11-6 (2:1.4.3-1) ...
+Setting up libxcb-render0 (1.7-2) ...
+Setting up libxcb-shm0 (1.7-2) ...
+Setting up libxrender1 (1:0.9.6-1) ...
+Setting up libcairo2 (1.10.2-6) ...
+Setting up libdatrie1 (0.2.4-2) ...
+Setting up x11-common (1:7.6+6) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-1) ...
+Setting up libjpeg62 (6b1-1) ...
+Setting up libjpeg62-dev (6b1-1) ...
+Setting up liblapack3gf (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.0-4) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libncurses5-dev (5.9-1) ...
+Setting up libthai-data (0.1.15-1) ...
+Setting up libthai0 (0.1.15-1) ...
+Setting up libxft2 (2.2.0-2) ...
+Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcrecpp0 (8.12-3) ...
+Setting up libpcre3-dev (8.12-3) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.44-2) ...
+Setting up libreadline6-dev (6.2-2) ...
+Setting up libreadline-dev (6.2-2) ...
+Setting up libsm6 (2:1.2.0-1) ...
+Setting up libtiff4 (3.9.5-1) ...
+Setting up libxext6 (2:1.3.0-1) ...
+Setting up libxss1 (1:1.2.1-1) ...
+Setting up libxt6 (1:1.1.1-1) ...
+Setting up zip (3.0-3) ...
+Setting up unzip (6.0-4) ...
+Setting up xdg-utils (1.1.0~rc1-2) ...
+Setting up tcl8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.9-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.13.0-2) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.13.0-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-bpo.5-sparc64-smp sparc (sparc64)
+Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 gcc-4.4_4.4.6-3 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 linux-libc-dev_2.6.39-1
+Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22+b1 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.4.5-9 cpp-4.4_4.4.6-3 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b2 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-9 g++-4.4_4.4.6-3 gcc_4:4.4.5-9 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.4.5-9 gfortran-4.4_4.4.6-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libc6-dev-sparc64_2.13-4 libc6-sparc64_2.13-4 libcairo2_1.10.2-6 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9+b1 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15+b1 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
+dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.8.2-1
+ dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: host architecture sparc
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
+gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153: warning: floating constant exceeds range of 'double'
+gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
+installing to /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../r-bioc-limma_3.8.2-1_sparc.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.8.2
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110602-1531
+
+r-bioc-limma_3.8.2-1_sparc.changes:
+Format: 1.8
+Date: Thu, 02 Jun 2011 13:07:58 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: sparc
+Version: 3.8.2-1
+Distribution: sid
+Urgency: low
+Maintainer: sparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Closes: 628548
+Changes:
+ r-bioc-limma (3.8.2-1) unstable; urgency=low
+ .
+ * Initial release (closes: #628548).
+Checksums-Sha1:
+ 593e7f312a2d3714d3384d602729db4fe6ff2017 1400872 r-bioc-limma_3.8.2-1_sparc.deb
+Checksums-Sha256:
+ d83025c0a51e19e530b743a4b1c813c0ef3f275fb4fb8114b477103fff9cf668 1400872 r-bioc-limma_3.8.2-1_sparc.deb
+Files:
+ b809e9956ec2c250940d2727d3feda41 1400872 gnu-r optional r-bioc-limma_3.8.2-1_sparc.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.2-1_sparc.deb
+──────────────────────────────
+
+ new debian package, version 2.0.
+ size 1400872 bytes: control archive= 1505 bytes.
+ 767 bytes, 16 lines control
+ 2226 bytes, 29 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.8.2-1
+ Architecture: sparc
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1676
+ Depends: libc6 (>= 2.6), r-base-core (>= 2.13.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/share/
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2116 2011-06-02 15:30 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 161 2011-06-02 15:30 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-06-02 15:31 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 9360 2011-06-02 15:31 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 1009 2011-06-02 15:31 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1342 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 2361 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/aliases.rds
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+-rw-r--r-- root/root 3735 2011-06-02 15:31 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 172730 2011-06-02 15:31 ./usr/lib/R/site-library/limma/R/limma.rdb
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+-rw-r--r-- root/root 5946 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/Rd.rds
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+-rw-r--r-- root/root 1179 2011-06-02 15:31 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-06-02 15:31 ./usr/lib/R/site-library/limma/html/00Index.html
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-5643b3e4-4c7d-4353-b689-33f1984b9a4b/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: sparc
+Build-Space: 5084
+Build-Time: 59
+Distribution: sid
+Install-Time: 202
+Job: r-bioc-limma_3.8.2-1
+Package: r-bioc-limma
+Package-Time: 315
+Source-Version: 3.8.2-1
+Space: 5084
+Status: successful
+Version: 3.8.2-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110602-1531
+Build needed 00:05:15, 5084k disc space
+Signature with key '81587D01' requested:
--
linear models for microarray data
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