[med-svn] [SCM] r-bioc-limma branch, meta, updated. 13af14a466570b114e36629d02dfd355a217d88f
Charles Plessy
plessy at debian.org
Sun Aug 14 12:01:52 UTC 2011
The following commit has been merged in the meta branch:
commit 13af14a466570b114e36629d02dfd355a217d88f
Author: Charles Plessy <plessy at debian.org>
Date: Sun Aug 14 20:41:54 2011 +0900
Built r-bioc-limma_3.8.3-1_amd64.changes
diff --git a/amd64.changes b/amd64.changes
index 70cbe0c..0267a4d 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,52 +2,52 @@
Hash: SHA256
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: source amd64
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
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- e00c45565d2296ad3c74e6364d350f488e2bf5d49845694739db00cdcab61a02 1395084 r-bioc-limma_3.8.2-1_amd64.deb
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Files:
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- 3ee3f6366c152f599dbd8bedefded85b 916654 gnu-r optional r-bioc-limma_3.8.2.orig.tar.gz
- 63cf5d468f9d7468cf41bb22c4554915 2158 gnu-r optional r-bioc-limma_3.8.2-1.diff.gz
- b5de0e25504dcc8ed7abb73be130c3d8 1395084 gnu-r optional r-bioc-limma_3.8.2-1_amd64.deb
+ 7b4dd2397949ab475d7fb78cc402d67c 1931 gnu-r optional r-bioc-limma_3.8.3-1.dsc
+ 2797ecb7973fec3427537d72272468bf 916729 gnu-r optional r-bioc-limma_3.8.3.orig.tar.gz
+ 81e9c18c8328bff817fb813f35fa2f27 2212 gnu-r optional r-bioc-limma_3.8.3-1.diff.gz
+ 43dd6af0b9ad6e85a5538edb80f7cedf 1396826 gnu-r optional r-bioc-limma_3.8.3-1_amd64.deb
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diff --git a/amd64.log b/amd64.log
index 7e6a4bd..57331d1 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,25 +1,28 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (amd64) 02 Jun 2011 13:10 ║
+║ r-bioc-limma 3.8.3-1 (amd64) 14 août 2011 20:31 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-GK7VJW' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-badec9ed-3191-419b-9664-72e3989450c0' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-limma-5TjC7j/r-bioc-limma-3.8.3' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-limma-5TjC7j' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-5127f103-55c3-4b67-8a0d-c8c4ecd8b678' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
+Hit ftp://ftp.jaist.ac.jp sid InRelease
+Hit ftp://ftp.jaist.ac.jp sid/main Sources/DiffIndex
+Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
+Hit ftp://ftp.jaist.ac.jp sid/main TranslationIndex
+Hit ftp://ftp.jaist.ac.jp sid/main Translation-fr
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -34,14 +37,14 @@ Reading state information...
Local sources
─────────────
-r-bioc-limma_3.8.2-1.dsc exists in .; copying to chroot
+r-bioc-limma_3.8.3-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8zHSJw/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-I0rSln/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -57,15 +60,15 @@ The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/706 B of archives.
+Need to get 0 B/714 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10799 files and directories currently installed.)
+(Reading database ... 10847 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-z1_v1h/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-k4f7Hd/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
OK
Reading package lists...
@@ -82,7 +85,7 @@ The following extra packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -106,7 +109,7 @@ The following NEW packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -114,259 +117,273 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded.
+Need to get 16.7 MB/53.3 MB of archives.
+After this operation, 132 MB of additional disk space will be used.
+Get:1 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libfreetype6 amd64 2.4.6-1 [435 kB]
+Get:2 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libgfortran3 amd64 4.6.1-6 [358 kB]
+Get:3 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpcrecpp0 amd64 8.12-4 [113 kB]
+Get:4 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxss1 amd64 1:1.2.1-2 [16.9 kB]
+Get:5 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gfortran-4.6 amd64 4.6.1-6 [5554 kB]
+Get:6 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libblas3gf amd64 1.2.20110419-2 [292 kB]
+Get:7 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libblas-dev amd64 1.2.20110419-2 [311 kB]
+Get:8 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main liblapack3gf amd64 3.3.1-1 [4437 kB]
+Get:9 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main liblapack-dev amd64 3.3.1-1 [4881 kB]
+Get:10 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpcre3-dev amd64 8.12-4 [307 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/53.1 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
+Fetched 16.7 MB in 12s (1325 kB/s)
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10847 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_amd64.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_amd64.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_amd64.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_amd64.deb) ...
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+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
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+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_amd64.deb) ...
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+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_amd64.deb) ...
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+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_amd64.deb) ...
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+Unpacking libxcb1 (from .../libxcb1_1.7-3_amd64.deb) ...
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+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
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+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_amd64.deb) ...
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+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_amd64.deb) ...
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+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
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+Unpacking libthai0 (from .../libthai0_0.1.15-2_amd64.deb) ...
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+Unpacking fontconfig (from .../fontconfig_2.8.0-3_amd64.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_amd64.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_amd64.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_amd64.deb) ...
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+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_amd64.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_amd64.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ...
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-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_amd64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ...
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Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
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-Selecting previously deselected package libpcre3.
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+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ...
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-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
-Selecting previously deselected package ucf.
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-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
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Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
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Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
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Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
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Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
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-Selecting previously deselected package fontconfig.
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-Selecting previously deselected package libgfortran3.
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Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_amd64.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_amd64.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_amd64.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_amd64.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
-Selecting previously deselected package libpixman-1-0.
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-Selecting previously deselected package libxau6.
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-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_amd64.deb) ...
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-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_amd64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
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-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_amd64.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_amd64.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_amd64.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_amd64.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_amd64.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
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-Selecting previously deselected package libthai0.
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-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_amd64.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_amd64.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_amd64.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_amd64.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_amd64.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_amd64.deb) ...
-Selecting previously deselected package libxext6.
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-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
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-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_amd64.deb) ...
Selecting previously deselected package zip.
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+Unpacking zip (from .../archives/zip_3.0-4_amd64.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_amd64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_amd64.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_amd64.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_amd64.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_amd64.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
Selecting previously deselected package sbuild-build-depends-r-bioc-limma-dummy.
Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
-Setting up bsdmainutils (8.2.2) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -374,8 +391,8 @@ Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1+b1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1+b1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-2 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-6 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -385,16 +402,34 @@ Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.8.2-1.dsc)
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.8.3-1.dsc)
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
Sufficient free space for build
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=charles
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_CHROOT_NAME=sid-amd64-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1000
+SCHROOT_GROUP=charles
+SCHROOT_SESSION_ID=sid-amd64-sbuild-5127f103-55c3-4b67-8a0d-c8c4ecd8b678
+SCHROOT_UID=1000
+SCHROOT_USER=charles
+SHELL=/bin/sh
+TERM=xterm
+USER=charles
+USERNAME=charles
+
dpkg-buildpackage
─────────────────
@@ -404,9 +439,9 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
+dpkg-buildpackage: source version 3.8.3-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-limma-3.8.2
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -414,9 +449,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -432,21 +467,21 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-limma-3.8.2
+ dpkg-source -b r-bioc-limma-3.8.3
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.diff.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.2-1.dsc
+dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.8.3-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -454,9 +489,9 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -466,24 +501,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/«PKGBUILDDIR»/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-limma-3.8.2/src'
-installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/«PKGBUILDDIR»/src'
+make[1]: Entering directory `/«PKGBUILDDIR»/src'
+make[1]: Leaving directory `/«PKGBUILDDIR»/src'
+installing to /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -493,17 +528,17 @@ installing to /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/sit
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /«PKGBUILDDIR»/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /«PKGBUILDDIR»/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -535,13 +570,13 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-limma_3.8.2-1_amd64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_amd64.deb'.
+ dpkg-genchanges >../r-bioc-limma_3.8.3-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1312
+Build finished at 20110814-2032
Finished
────────
@@ -553,60 +588,60 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_amd64.changes:
+r-bioc-limma_3.8.3-1_amd64.changes:
───────────────────────────────────
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: source amd64
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
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- 8424f7ce6d39355f2b410db4fc11c7ba67d65bed 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 1aee4cf6f887e704f27946fce20a345103899e07 2158 r-bioc-limma_3.8.2-1.diff.gz
- 7a9021d1a25139cd267b1cbe65c70f00f65f33f6 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ d95b56e2dcc99a9468e559587f95a680145abe4c 1045 r-bioc-limma_3.8.3-1.dsc
+ 6f2ed4cd5bc1405e5db27589578e971ce261dfa6 916729 r-bioc-limma_3.8.3.orig.tar.gz
+ bb24e938e7fe6d981a8df0c657eb7969272308c3 2212 r-bioc-limma_3.8.3-1.diff.gz
+ 0e09d845953042739c7e7f39e90a700b811131e0 1396826 r-bioc-limma_3.8.3-1_amd64.deb
Checksums-Sha256:
- 48beab63b46f6822f687cb19301be159bd18b9749791bb6ee975a9b98d96c677 1045 r-bioc-limma_3.8.2-1.dsc
- 9a824792349de351a6623102feb5c2f4bc3642215496eb3422a78938422c970f 916654 r-bioc-limma_3.8.2.orig.tar.gz
- 6f5a543511b1b3d29d68e2dbf4aa48c1371fa0af2b9f9d40272132f629f6b94f 2158 r-bioc-limma_3.8.2-1.diff.gz
- e00c45565d2296ad3c74e6364d350f488e2bf5d49845694739db00cdcab61a02 1395084 r-bioc-limma_3.8.2-1_amd64.deb
+ 4132a1ef078235d44be3b47d65b9ceb080866a4ad7b2990ecb91b87a481f8273 1045 r-bioc-limma_3.8.3-1.dsc
+ 91a58971ed2792c028532d92a800305295aedaf56f4c2bd9953b4f2da2c5394c 916729 r-bioc-limma_3.8.3.orig.tar.gz
+ 82415af68ccb240261d121c311f61ff1d8724e6dc3b1689ba7594ead8d54da2d 2212 r-bioc-limma_3.8.3-1.diff.gz
+ c19fefcc6ad75f05da2871a8bc52be4dc3320799b9ace6fbac22b4f2dcbd7109 1396826 r-bioc-limma_3.8.3-1_amd64.deb
Files:
- 2944af4b5a4729edf5ec047d3f06edb1 1045 gnu-r optional r-bioc-limma_3.8.2-1.dsc
- 3ee3f6366c152f599dbd8bedefded85b 916654 gnu-r optional r-bioc-limma_3.8.2.orig.tar.gz
- 63cf5d468f9d7468cf41bb22c4554915 2158 gnu-r optional r-bioc-limma_3.8.2-1.diff.gz
- b5de0e25504dcc8ed7abb73be130c3d8 1395084 gnu-r optional r-bioc-limma_3.8.2-1_amd64.deb
+ e601e700a65fb11f3a184aebad85151e 1045 gnu-r optional r-bioc-limma_3.8.3-1.dsc
+ 2797ecb7973fec3427537d72272468bf 916729 gnu-r optional r-bioc-limma_3.8.3.orig.tar.gz
+ 81e9c18c8328bff817fb813f35fa2f27 2212 gnu-r optional r-bioc-limma_3.8.3-1.diff.gz
+ 43dd6af0b9ad6e85a5538edb80f7cedf 1396826 gnu-r optional r-bioc-limma_3.8.3-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_amd64.deb
+r-bioc-limma_3.8.3-1_amd64.deb
──────────────────────────────
new debian package, version 2.0.
- size 1395084 bytes: control archive= 1509 bytes.
+ size 1396826 bytes: control archive= 1508 bytes.
769 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1656
- Depends: libc6 (>= 2.2.5), r-base-core (>= 2.13.0~)
+ Installed-Size: 1672
+ Depends: libc6 (>= 2.2.5), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -618,50 +653,50 @@ r-bioc-limma_3.8.2-1_amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 172718 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3733 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 384 2011-06-02 13:12 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 446442 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3251 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1302 2011-06-02 13:12 ./usr/lib/R/site-library/limma/help/paths.rds
--rwxr-xr-x root/root 1230 2011-06-02 13:12 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1872 2011-06-02 13:12 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:12 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5946 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 503 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2853 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1049 2011-06-02 13:12 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 1005 2011-06-02 13:12 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10856 2011-06-02 13:12 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9360 2011-06-02 13:12 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 687780 2011-06-02 13:12 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 13:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2116 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 161 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 173262 2011-08-14 20:32 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 384 2011-08-14 20:32 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3738 2011-08-14 20:32 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 5947 2011-08-14 20:32 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1052 2011-08-14 20:32 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5524 2011-08-14 20:32 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 217 2011-08-14 20:32 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 2854 2011-08-14 20:32 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 505 2011-08-14 20:32 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10904 2011-08-14 20:32 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6150 2011-08-14 20:32 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 446400 2011-08-14 20:32 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 2363 2011-08-14 20:32 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1303 2011-08-14 20:32 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3256 2011-08-14 20:32 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 9360 2011-08-14 20:32 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 687780 2011-08-14 20:32 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 84899 2011-08-14 20:32 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 45616 2011-08-14 20:32 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 673 2011-08-14 20:32 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-08-14 20:32 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 1005 2011-08-14 20:32 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 1872 2011-08-14 20:32 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-08-14 20:32 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-08-14 20:32 ./usr/lib/R/site-library/limma/html/00Index.html
+-rwxr-xr-x root/root 1230 2011-08-14 20:32 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 20:32 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2117 2011-08-14 20:31 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26050 2011-08-09 01:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 234 2011-08-14 20:31 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -669,11 +704,24 @@ drwxr-xr-x root/root 0 2011-06-02 13:12 ./usr/share/doc/r-bioc-limma/
└──────────────────────────────────────────────────────────────────────────────┘
+lintian
+───────
+
+W: r-bioc-limma source: unused-build-dependency-on-cdbs
+I: r-bioc-limma source: missing-debian-source-format
+W: r-bioc-limma: copyright-without-copyright-notice
+W: r-bioc-limma: executable-not-elf-or-script usr/lib/R/site-library/limma/doc/index.html
+W: r-bioc-limma: executable-not-elf-or-script usr/lib/R/site-library/limma/doc/changelog.txt
+W: r-bioc-limma: executable-not-elf-or-script usr/lib/R/site-library/limma/CITATION
+W: r-bioc-limma: executable-not-elf-or-script usr/lib/R/site-library/limma/doc/limma.Rnw
+
+I: Lintian run was successful.
+
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
@@ -686,7 +734,7 @@ The following packages will be REMOVED:
gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
+ libglib2.0-0* libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev*
liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
@@ -696,9 +744,9 @@ The following packages will be REMOVED:
r-base-dev* sbuild-build-depends-core-dummy*
sbuild-build-depends-r-bioc-limma-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded.
-After this operation, 129 MB disk space will be freed.
-(Reading database ... 14745 files and directories currently installed.)
+0 upgraded, 0 newly installed, 78 to remove and 0 not upgraded.
+After this operation, 132 MB disk space will be freed.
+(Reading database ... 14800 files and directories currently installed.)
Removing sbuild-build-depends-r-bioc-limma-dummy ...
Removing r-base-dev ...
Removing cdbs ...
@@ -765,8 +813,9 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
Removing libjpeg62 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libreadline-dev ...
@@ -832,17 +881,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 5944
-Build-Time: 9
+Build-Space: 5976
+Build-Time: 18
Distribution: unstable
-Install-Time: 90
-Job: r-bioc-limma_3.8.2-1.dsc
+Install-Time: 41
+Job: r-bioc-limma_3.8.3-1.dsc
+Lintian: pass
Package: r-bioc-limma
-Package-Time: 102
-Source-Version: 3.8.2-1
-Space: 5944
+Package-Time: 69
+Source-Version: 3.8.3-1
+Space: 5976
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1312
-Build needed 00:01:42, 5944k disc space
+Finished at 20110814-2032
+Build needed 00:01:09, 5976k disc space
diff --git a/dsc b/dsc
index 3f82102..12da680 100644
--- a/dsc
+++ b/dsc
@@ -5,39 +5,39 @@ Format: 1.0
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: any
-Version: 3.8.2-1
+Version: 3.8.3-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
Homepage: http://bioinf.wehi.edu.au/limma/
Standards-Version: 3.9.2
Vcs-Browser: http://git.debian.org/?p=debian-med/r-bioc-limma.git
-Vcs-Git: git://anonscm.debian.org/debian-med/r-bioc-limma.git
+Vcs-Git: git://git.debian.org/git/debian-med/r-bioc-limma.git
Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checksums-Sha1:
- 8424f7ce6d39355f2b410db4fc11c7ba67d65bed 916654 r-bioc-limma_3.8.2.orig.tar.gz
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linear models for microarray data
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