[med-svn] r7271 - in trunk/packages/ensembl/ensembl: . 63/debian 63/debian/patches

[Steffen Möller]

Author: moeller
Date: 2011-07-13 14:12:17 +0000 (Wed, 13 Jul 2011)
New Revision: 7271

Added:
   trunk/packages/ensembl/ensembl/63/
Modified:
   trunk/packages/ensembl/ensembl/63/debian/patches/SiteDefs_tmpdir.patch
   trunk/packages/ensembl/ensembl/63/debian/patches/biodas_lite.patch
   trunk/packages/ensembl/ensembl/63/debian/patches/defaults_ini.patch
   trunk/packages/ensembl/ensembl/63/debian/patches/species_list.patch
   trunk/packages/ensembl/ensembl/63/debian/prepare_ensembl_source_packages.sh
Log:
Preparation for new version 63 of Ensembl


Modified: trunk/packages/ensembl/ensembl/63/debian/patches/SiteDefs_tmpdir.patch
===================================================================
--- trunk/packages/ensembl/ensembl/62/debian/patches/SiteDefs_tmpdir.patch	2011-07-13 11:06:19 UTC (rev 7266)
+++ trunk/packages/ensembl/ensembl/63/debian/patches/SiteDefs_tmpdir.patch	2011-07-13 14:12:17 UTC (rev 7271)
@@ -1,8 +1,8 @@
-Index: ensembl-57/conf/SiteDefs.pm
+Index: ensembl-63/conf/SiteDefs.pm
 ===================================================================
---- ensembl-57.orig/conf/SiteDefs.pm	2010-10-02 13:24:56.754321546 +0200
-+++ ensembl-57/conf/SiteDefs.pm	2010-10-02 13:26:42.319339941 +0200
-@@ -462,7 +462,7 @@
+--- ensembl-63.orig/conf/SiteDefs.pm	2011-06-07 11:29:07.000000000 +0200
++++ ensembl-63/conf/SiteDefs.pm	2011-07-13 16:06:30.021695787 +0200
+@@ -471,7 +471,7 @@
  }
  
  logs("$ENSEMBL_SERVERROOT/logs");

Modified: trunk/packages/ensembl/ensembl/63/debian/patches/biodas_lite.patch
===================================================================
--- trunk/packages/ensembl/ensembl/62/debian/patches/biodas_lite.patch	2011-07-13 11:06:19 UTC (rev 7266)
+++ trunk/packages/ensembl/ensembl/63/debian/patches/biodas_lite.patch	2011-07-13 14:12:17 UTC (rev 7271)
@@ -1,8 +1,8 @@
-Index: ensembl-57/modules/Bio/Das/Lite.pm
+Index: ensembl-63/modules/Bio/Das/Lite.pm
 ===================================================================
---- ensembl-57.orig/modules/Bio/Das/Lite.pm	2010-08-20 20:11:36.249572927 +0200
-+++ ensembl-57/modules/Bio/Das/Lite.pm	2010-08-20 20:12:23.722574652 +0200
-@@ -804,7 +804,9 @@
+--- ensembl-63.orig/modules/Bio/Das/Lite.pm	2011-04-13 15:20:36.000000000 +0200
++++ ensembl-63/modules/Bio/Das/Lite.pm	2011-07-13 16:06:15.097621778 +0200
+@@ -806,7 +806,9 @@
  
    if (!$self->{'ua'}) {
      $self->{'ua'} = Bio::Das::Lite::UserAgent->new();

Modified: trunk/packages/ensembl/ensembl/63/debian/patches/defaults_ini.patch
===================================================================
--- trunk/packages/ensembl/ensembl/62/debian/patches/defaults_ini.patch	2011-07-13 11:06:19 UTC (rev 7266)
+++ trunk/packages/ensembl/ensembl/63/debian/patches/defaults_ini.patch	2011-07-13 14:12:17 UTC (rev 7271)
@@ -1,7 +1,7 @@
 Index: ensembl-57/public-plugins/mirror/conf/ini-files/DEFAULTS.ini
 ===================================================================
 --- /dev/null	1970-01-01 00:00:00.000000000 +0000
-+++ ensembl-57/public-plugins/mirror/conf/ini-files/DEFAULTS.ini	2010-08-20 20:10:35.874669268 +0200
++++ ensembl-63/public-plugins/mirror/conf/ini-files/DEFAULTS.ini	2010-08-20 20:10:35.874669268 +0200
 @@ -0,0 +1,61 @@
 +[general]
 +DATABASE_HOST       = ensembldb.ensembl.org

Modified: trunk/packages/ensembl/ensembl/63/debian/patches/species_list.patch
===================================================================
--- trunk/packages/ensembl/ensembl/62/debian/patches/species_list.patch	2011-07-13 11:06:19 UTC (rev 7266)
+++ trunk/packages/ensembl/ensembl/63/debian/patches/species_list.patch	2011-07-13 14:12:17 UTC (rev 7271)
@@ -1,7 +1,7 @@
 Index: ensembl-57/public-plugins/mirror/htdocs/info/about/species.html
 ===================================================================
 --- /dev/null	1970-01-01 00:00:00.000000000 +0000
-+++ ensembl-57/public-plugins/mirror/htdocs/info/about/species.html	2010-08-20 19:56:00.602575811 +0200
++++ ensembl-63/public-plugins/mirror/htdocs/info/about/species.html	2010-08-20 19:56:00.602575811 +0200
 @@ -0,0 +1,9 @@
 +<html>
 +<head>

Modified: trunk/packages/ensembl/ensembl/63/debian/prepare_ensembl_source_packages.sh
===================================================================
--- trunk/packages/ensembl/ensembl/62/debian/prepare_ensembl_source_packages.sh	2011-07-13 11:06:19 UTC (rev 7266)
+++ trunk/packages/ensembl/ensembl/63/debian/prepare_ensembl_source_packages.sh	2011-07-13 14:12:17 UTC (rev 7271)
@@ -19,7 +19,7 @@
 # All libraries must be of the same version - update them all or none
 if [ -z "$ensemblversion" ]; then
 	echo "W: Ensembl version previously unset, setting to '62'."
-	ensemblversion=62
+	ensemblversion=63
 fi
 
 downloaddir=$destdir/$ensemblversion.$$