[med-svn] r7272 - in trunk/packages/vienna-rna/trunk/debian: . patches

[Alex Mestiashvili]

Author: malex-guest
Date: 2011-07-13 15:56:00 +0000 (Wed, 13 Jul 2011)
New Revision: 7272

Added:
   trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch
Modified:
   trunk/packages/vienna-rna/trunk/debian/control
   trunk/packages/vienna-rna/trunk/debian/patches/series
   trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides
Log:
fixed few linitin's pedantic complains .


Modified: trunk/packages/vienna-rna/trunk/debian/control
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/control	2011-07-13 14:12:17 UTC (rev 7271)
+++ trunk/packages/vienna-rna/trunk/debian/control	2011-07-13 15:56:00 UTC (rev 7272)
@@ -1,12 +1,12 @@
 Source: vienna-rna
-Section: science
 Priority: optional
+Section: science
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Alex Mestiashvili <alex at biotec.tu-dresden.de>
 DM-Upload-Allowed: yes
-Build-Depends: debhelper (>= 7.1), autotools-dev, quilt (>= 0.47),
+Build-Depends: debhelper (>= 7.1), autotools-dev,
  libg2-dev, libgd2-xpm-dev, libx11-dev, texinfo, texlive-latex-base, help2man, perl-doc
-Standards-Version: 3.9.1
+Standards-Version: 3.9.2
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/vienna-rna/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/vienna-rna/trunk/
 Homepage: http://www.tbi.univie.ac.at/~ivo/RNA/
@@ -14,7 +14,6 @@
 
 Package: vienna-rna
 Architecture: any
-Section: science
 Depends: ${shlibs:Depends}, ${perl:Depends}, ${misc:Depends}
 Recommends: readseq (>= 1-9)
 Description: RNA sequence analysis

Added: trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch	                        (rev 0)
+++ trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch	2011-07-13 15:56:00 UTC (rev 7272)
@@ -0,0 +1,53 @@
+Description: linitian findout spelling-error .
+Author: Alex Mestiashvili <alex at biotec.tu-dresden.de>
+Applied-Upstream: version 1.8.5
+Last-Update: 2011-07-13
+
+Index: ViennaRNA-1.8.5/lib/utils.c
+===================================================================
+--- ViennaRNA-1.8.5.orig/lib/utils.c
++++ ViennaRNA-1.8.5/lib/utils.c
+@@ -215,7 +215,7 @@
+       case ')':
+ 	p += 2;
+ 	break;
+-      default: nrerror("pack_structure: illegal charcter in structure");
++      default: nrerror("pack_structure: illegal character in structure");
+       }
+       if (i<l) i++;
+     }
+Index: ViennaRNA-1.8.5/Cluster/AnalyseDists.1
+===================================================================
+--- ViennaRNA-1.8.5.orig/Cluster/AnalyseDists.1
++++ ViennaRNA-1.8.5/Cluster/AnalyseDists.1
+@@ -18,7 +18,7 @@
+ This matches the output format of, e.g., RNAdistance. 
+ The input data file may contain arbitrary lines before and after the 
+ distance matrix. All lines beginning with '> ' that are not of the 
+-above form are written to stdout. The programm continues reading
++above form are written to stdout. The program continues reading
+ until it encounters an EOF condition or the terminator character '@'.
+ .br
+ A list of taxa names can be specified in the input stream. The list 
+Index: ViennaRNA-1.8.5/Progs/RNAup.c
+===================================================================
+--- ViennaRNA-1.8.5.orig/Progs/RNAup.c
++++ ViennaRNA-1.8.5/Progs/RNAup.c
+@@ -794,7 +794,7 @@
+     const char delimiters[] = " -";
+ 
+     if (strchr(unstrs,','))
+-       nrerror("option -u : enter either a range using \"-\" or a comma seperated list\n");
++       nrerror("option -u : enter either a range using \"-\" or a comma separated list\n");
+     cp = strdup(unstrs);                
+     token = strtok(cp,delimiters);     
+     min = atoi(token);
+@@ -830,7 +830,7 @@
+   } else if (unstrs[0] != '\0' && strchr(unstrs,',')) {
+     const char delimiters[] = " ,";
+     if (strchr(unstrs,'-'))
+-       nrerror("option -u : enter either a range using \"-\" or a comma seperated list\n");
++       nrerror("option -u : enter either a range using \"-\" or a comma separated list\n");
+     
+     cp = strdup(unstrs);               
+     token = strtok (cp,delimiters);

Modified: trunk/packages/vienna-rna/trunk/debian/patches/series
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/patches/series	2011-07-13 14:12:17 UTC (rev 7271)
+++ trunk/packages/vienna-rna/trunk/debian/patches/series	2011-07-13 15:56:00 UTC (rev 7272)
@@ -6,3 +6,4 @@
 do_not_configure_g2-0.70.patch
 fix_RNAlib_info.patch
 naview_copyright.patch
+fix_syntax.patch

Modified: trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides	2011-07-13 14:12:17 UTC (rev 7271)
+++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides	2011-07-13 15:56:00 UTC (rev 7272)
@@ -1,8 +1,6 @@
 # Upstream has left these files in the original tarball and there was no other
 # reason to repack the tarball
 vienna-rna source: configure-generated-file-in-source RNAforester/g2-0.70/config.log
-vienna-rna source: configure-generated-file-in-source RNAforester/g2-0.70/config.status
-
 # The line is not intended to be broken
 vienna-rna: manpage-has-errors-from-man usr/share/man/man1/RNAup.1.gz 140: warning [p 3, 1.0i]: can't break line
 vienna-rna: manpage-has-errors-from-man usr/share/man/man1/AnalyseDists.1.gz 2: warning: macro `ER' not defined