[med-svn] [SCM] picard-tools branch, master, updated. upstream/1.41-40-gc89127e

[Charles Plessy]

The following commit has been merged in the master branch:
commit d0de36c0285ee0711f2e1f7fc691adc5ebbe2b8a
Merge: 3a1681dc47839538cb988eb664a5c330dc48468b 53bf47c6212ba1d173493c5708ab687b0238ef38
Author: Charles Plessy <plessy at debian.org>
Date:   Fri Jun 3 20:02:14 2011 +0900

    Merge commit 'upstream/1.42'


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manipulate SAM and BAM files