[med-svn] [SCM] picard-tools branch, master, updated. upstream/1.41-40-gc89127e

[Charles Plessy]

The following commit has been merged in the master branch:
commit 7b916de4967cc1ce81ce7a3e8cb1938bbe5afc16
Merge: c1c3ea482b79f63038a12e31e674440b0d315e46 707d16f6cc996d39d307dc5c7350c916fb6c2c7c
Author: Charles Plessy <plessy at debian.org>
Date:   Fri Jun 3 20:09:53 2011 +0900

    Merge commit 'upstream/1.45'


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manipulate SAM and BAM files