[med-svn] [SCM] picard-tools branch, master, updated. upstream/1.41-40-gc89127e

[Charles Plessy]

The following commit has been merged in the master branch:
commit 2217ffeb8b71c0302e4cec37069698f582d3d5d1
Merge: 7b916de4967cc1ce81ce7a3e8cb1938bbe5afc16 2067a8de47ca9d3ef9c1d53a44dc85f39e084b0a
Author: Charles Plessy <plessy at debian.org>
Date:   Fri Jun 3 20:10:40 2011 +0900

    Merge commit 'upstream/1.46'


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manipulate SAM and BAM files