[med-svn] r6920 - in trunk/packages/mgltools: dejavu/trunk/debian mslib/trunk/debian networkeditor/trunk/debian pyautodock/trunk/debian pybabel/trunk/debian qslimlib/trunk/debian support/trunk/debian symserv/trunk/debian viewerframework/trunk/debian vision/trunk/debian vision/trunk/debian/patches volume/trunk/debian

Thorsten Alteholz alteholz-guest at alioth.debian.org
Mon Jun 6 17:52:47 UTC 2011 

Author: alteholz-guest
Date: 2011-06-06 17:52:47 +0000 (Mon, 06 Jun 2011)
New Revision: 6920

Added:
   trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides
   trunk/packages/mgltools/mslib/trunk/debian/watch
   trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides
   trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides
   trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides
   trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides
   trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides
   trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides
   trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides
   trunk/packages/mgltools/vision/trunk/debian/patches/series
   trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides
Modified:
   trunk/packages/mgltools/mslib/trunk/debian/control
   trunk/packages/mgltools/pyautodock/trunk/debian/control
   trunk/packages/mgltools/qslimlib/trunk/debian/control
   trunk/packages/mgltools/qslimlib/trunk/debian/rules
   trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch
   trunk/packages/mgltools/vision/trunk/debian/rules
Log:
some lintian calming

Added: trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-dejavu: extra-license-file

Modified: trunk/packages/mgltools/mslib/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/mslib/trunk/debian/control	2011-06-06 14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/mslib/trunk/debian/control	2011-06-06 17:52:47 UTC (rev 6920)
@@ -2,7 +2,7 @@
 Section: non-free/science
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: no
+DM-Upload-Allowed: yes
 XS-Autobuild: no
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
 Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all-dev
@@ -15,4 +15,6 @@
 Architecture: i386 amd64
 Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-qslimlib
 Description: MSMS library python extension module
- The library is needed by mgltools-autodocktools at runtime.
+ The library is needed by mgltools-autodocktools at runtime. This package 
+ contains an interface to build a Python extension for MSMS library. 
+ SWIG (version 1.3.20 or higher) is used for generating a C wrapper code.

Added: trunk/packages/mgltools/mslib/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/mslib/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/mgltools/mslib/trunk/debian/watch	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+version=3
+http://mgltools.scripps.edu/downloads/.*mgltools_source_([0-9.]+)\.tar\.gz

Added: trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-networkeditor: extra-license-file

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/control	2011-06-06 14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/control	2011-06-06 17:52:47 UTC (rev 6920)
@@ -20,9 +20,9 @@
 Description: Python implementation of autodock
  This package is part of the mgltools set of Python libraries which
  provide an infrastructure for the analysis of protein structures and
- their docking of chemical compounds.  This package provides a python
+ their docking of chemical compounds.  This package provides a Python
  implementation of the autodock3 scoring function and of the new
- autodock4 scoring function. Also it includes a python implementation
+ autodock4 scoring function. Also it includes a Python implementation
  of AutoGrid.
  .
  AutoDock is a well established package for the automated screening of

Added: trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-pyautodock: extra-license-file

Added: trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-pybabel: extra-license-file

Modified: trunk/packages/mgltools/qslimlib/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/control	2011-06-06 14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/control	2011-06-06 17:52:47 UTC (rev 6920)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python2.5-dev, swig (>= 1.3.20), mesa-common-dev, libglu1-mesa-dev, python-numpy
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all, swig (>= 1.3.20), mesa-common-dev, libglu1-mesa-dev, python-numpy
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/qslimlib/trunk/?rev=0&sc=0
@@ -21,8 +21,8 @@
  provide an infrastructure for the analysis of protein structures and
  their docking of chemical compounds.
  .
- This module builds a python extension of the QSlim Surface
- Simplification library developped by Michael Garland (University of
+ This module builds a Python extension of the QSlim Surface
+ Simplification library developed by Michael Garland (University of
  Illinois).  The library implements the quadric-based algorithm
  for simplification of highly detailed polygonal surface
  models into faithful approximations containing fewer polygons
@@ -31,5 +31,5 @@
  This distribution contains source code of the library (see
  src/COPYING.txt).  Distutils are used to wrap the library with SWIG
  (version 1.3.20 or higher), build the C++ libraries (libgfx.a, libmix.a)
- and build the python extension (_qslimlib.so).
+ and build the Python extension (_qslimlib.so).
 

Modified: trunk/packages/mgltools/qslimlib/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/rules	2011-06-06 14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/rules	2011-06-06 17:52:47 UTC (rev 6920)
@@ -13,8 +13,7 @@
 
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
 
 clean::
 	find . -name CVS -a -type d| xargs -r rm -r
-	rm -rf build build-stamp debian/Pmv
+	rm -rf build build-stamp config.status config.log

Added: trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-support: extra-license-file

Added: trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides
===================================================================
--- trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-symserv: extra-license-file

Added: trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides
===================================================================
--- trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-viewerframework: extra-license-file

Added: trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-vision: extra-license-file

Added: trunk/packages/mgltools/vision/trunk/debian/patches/series
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/mgltools/vision/trunk/debian/patches/series	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1 @@
+unversioned_shebang.patch

Modified: trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch	2011-06-06 14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch	2011-06-06 17:52:47 UTC (rev 6920)
@@ -1,4 +1,8 @@
-diff -Nur -x '*.orig' -x '*~' mgltools-vision-1.5.4.cvs.20100912//setup.py mgltools-vision-1.5.4.cvs.20100912.new//setup.py
+Description: remove version from path to python interpreter
+Author: Luca Falavigna <dktrkranz at debian.org>
+Last-Update: 2011-05-09
+Index: mgltools-vision-1.5.4.cvs.20100912/setup.py
+===================================================================
 --- mgltools-vision-1.5.4.cvs.20100912//setup.py	2007-09-28 19:55:27.000000000 +0200
 +++ mgltools-vision-1.5.4.cvs.20100912.new//setup.py	2011-05-09 21:29:52.563352863 +0200
 @@ -43,7 +43,7 @@
@@ -10,9 +14,10 @@
              fnew.writelines(txt)
              fnew.close()
          build_scripts.copy_scripts(self)
-diff -Nur -x '*.orig' -x '*~' mgltools-vision-1.5.4.cvs.20100912//Vision/bin/vision mgltools-vision-1.5.4.cvs.20100912.new//Vision/bin/vision
---- mgltools-vision-1.5.4.cvs.20100912//Vision/bin/vision	2007-10-30 22:22:10.000000000 +0100
-+++ mgltools-vision-1.5.4.cvs.20100912.new//Vision/bin/vision	2011-05-09 21:29:35.735352874 +0200
+Index: mgltools-vision-1.5.4.cvs.20100912/Vision/bin/vision
+===================================================================
+--- mgltools-vision-1.5.4.cvs.20100912/Vision/bin/vision	2007-10-30 22:22:10.000000000 +0100
++++ mgltools-vision-1.5.4.cvs.20100912.new/Vision/bin/vision	2011-05-09 21:29:35.735352874 +0200
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env python2.5
 +#!/usr/bin/python

Modified: trunk/packages/mgltools/vision/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/rules	2011-06-06 14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/vision/trunk/debian/rules	2011-06-06 17:52:47 UTC (rev 6920)
@@ -13,7 +13,6 @@
 
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/python-distutils.mk
-include /usr/share/cdbs/1/rules/simple-patchsys.mk
 
 install::
 	find . -name "runVision" | xargs -r chmod +x 

Added: trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides
===================================================================
--- trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides	2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-volume: extra-license-file

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