[med-svn] r6921 - in trunk/packages: . plastimatch plastimatch/trunk plastimatch/trunk/debian plastimatch/trunk/debian/source

Greg Sharp gregsharp-guest at alioth.debian.org
Tue Jun 7 01:01:18 UTC 2011 

Author: gregsharp-guest
Date: 2011-06-07 01:01:17 +0000 (Tue, 07 Jun 2011)
New Revision: 6921

Added:
   trunk/packages/plastimatch/
   trunk/packages/plastimatch/trunk/
   trunk/packages/plastimatch/trunk/debian/
   trunk/packages/plastimatch/trunk/debian/changelog
   trunk/packages/plastimatch/trunk/debian/compat
   trunk/packages/plastimatch/trunk/debian/control
   trunk/packages/plastimatch/trunk/debian/copyright
   trunk/packages/plastimatch/trunk/debian/rules
   trunk/packages/plastimatch/trunk/debian/source/
   trunk/packages/plastimatch/trunk/debian/source/format
   trunk/packages/plastimatch/trunk/debian/watch
Log:
First attempt at debian files for plastimatch

Added: trunk/packages/plastimatch/trunk/debian/changelog
===================================================================
--- trunk/packages/plastimatch/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/plastimatch/trunk/debian/changelog	2011-06-07 01:01:17 UTC (rev 6921)
@@ -0,0 +1,5 @@
+plastimatch (1.5-1) experimental; urgency=low
+
+  * Initial release (Closes: #629344)
+
+ -- Greg Sharp <gregsharp.geo at yahoo.com>  Sun, 05 Jun 2011 13:25:16 -0400


Property changes on: trunk/packages/plastimatch/trunk/debian/changelog
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/plastimatch/trunk/debian/compat
===================================================================
--- trunk/packages/plastimatch/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/plastimatch/trunk/debian/compat	2011-06-07 01:01:17 UTC (rev 6921)
@@ -0,0 +1 @@
+7


Property changes on: trunk/packages/plastimatch/trunk/debian/compat
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/plastimatch/trunk/debian/control
===================================================================
--- trunk/packages/plastimatch/trunk/debian/control	                        (rev 0)
+++ trunk/packages/plastimatch/trunk/debian/control	2011-06-07 01:01:17 UTC (rev 6921)
@@ -0,0 +1,32 @@
+Source: plastimatch
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Gregory C. Sharp <gregsharp.geo at yahoo.com>
+Build-Depends: debhelper (>= 7.0.50~), cmake,
+  libinsighttoolkit3-dev (>= 3.20.0-5), libgdcm2-dev
+Standards-Version: 3.9.1
+Homepage: http://plastimatch.org
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/plastimatch/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/plastimatch/trunk/?rev=0&sc=0
+
+Package: plastimatch
+Section: science
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: medical image reconstruction and registration
+ Plastimatch is an open source software for deformable image registration. It is designed for high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include:
+    * B-spline method for deformable image registration (GPU and multicore accelerated)
+    * Demons method for deformable image registration (GPU accelerated)
+    * ITK-based algorithms for translation, rigid, affine, demons, and B-spline registration
+    * Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types
+    * Landmark-based deformable registration using thin-plate splines for global registration
+    * Landmark-based deformable registration using radial basis functions for local corrections
+    * Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze
+    * DICOM and DICOM-RT import and export
+    * XiO import and export
+    * Plugin to 3D Slicer
+ Plastimatch also features two handy utilities which are not directly related to image registration:
+    * FDK cone-beam CT reconstruction (GPU and multicore accelerated)
+    * Digitally reconstructed radiograph (DRR) generation (GPU and multicore accelerated)


Property changes on: trunk/packages/plastimatch/trunk/debian/control
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/plastimatch/trunk/debian/copyright
===================================================================
--- trunk/packages/plastimatch/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/plastimatch/trunk/debian/copyright	2011-06-07 01:01:17 UTC (rev 6921)
@@ -0,0 +1,117 @@
+Name: plastimatch
+Maintainer: Greg Sharp
+Source: http://plastimatch.org
+
+Plastimatch Software License ("Software License") Version 1.0
+
+This Software License covers downloads from the Plastimatch project
+("Plastimatch") maintained by The General Hospital Corporation
+Inc. ("MGH").
+
+Your downloading, copying, modifying, displaying, distributing or use
+of any software and/or data from Plastimatch (collectively, the
+"Software") constitutes acceptance of all of the terms and conditions
+of this Software License.  If you do not agree to such terms and
+conditions, you have no right to download, copy, modify, display,
+distribute or use the Software.
+
+
+1. As used in this Software License, "you" means the individual
+   downloading and/or using, reproducing, modifying, displaying and/or
+   distributing the Software and the institution or entity which
+   employs or is otherwise affiliated with such individual in
+   connection therewith.  The MGH hereby grants you, with right to
+   sublicense, with respect to MGH's rights in the software, and data,
+   if any, which is the subject of this Software License
+   (collectively, the "Software"), a royalty-free, non-exclusive
+   license to use, reproduce, make derivative works of, display and
+   distribute the Software, provided that:
+
+   (a) you accept and adhere to all of the terms and conditions of
+   this Software License;
+
+   (b) in connection with any copy of or sublicense of all or any
+   portion of the Software, all of the terms and conditions in this
+   Software License shall appear in and shall apply to such copy and
+   such sublicense, including without limitation all source and
+   executable forms and on any user documentation, prefaced with the
+   following words: "All or portions of this licensed product (such
+   portions are the "Software") have been obtained under license from
+   MGH and are subject to the following terms and conditions:"
+
+   (c) you preserve and maintain all applicable attributions,
+   copyright notices and licenses included in or applicable to the
+   Software;
+
+   (d) modified versions of the Software must be clearly identified
+   and marked as such, and must not be misrepresented as being the
+   original Software; and
+
+   (e) you consider making, but are under no obligation to make, the
+   source code of any of your modifications to the Software freely
+   available to others on an open source basis.
+
+2. The license granted under this Software License includes without
+   limitation the right to (i) incorporate the Software into
+   proprietary programs (subject to any restrictions applicable to
+   such programs), (ii) add your own copyright statement to your
+   modifications of the Software, and (iii) provide additional or
+   different license terms and conditions in your sublicenses of
+   modifications of the Software; provided that in each case your use,
+   reproduction or distribution of such modifications otherwise
+   complies with the conditions stated in this Software License.
+
+3. This Software License does not grant any rights with respect to
+   third party software, except those rights that MGH has been
+   authorized by a third party to grant to you, and accordingly you
+   are solely responsible for (i) obtaining any permissions from third
+   parties that you need to use, reproduce, make derivative works of,
+   display and distribute the Software, and (ii) informing your
+   sublicensees, including without limitation your end-users, of their
+   obligations to secure any such required permissions.
+
+4. The Software has been designed for research purposes only and has
+   not been reviewed or approved by the Food and Drug Administration
+   or by any other agency.  YOU ACKNOWLEDGE AND AGREE THAT CLINICAL
+   APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED.  Any
+   commercialization of the Software is at the sole risk of the party
+   or parties engaged in such commercialization.  You further agree to
+   use, reproduce, make derivative works of, display and distribute
+   the Software in compliance with all applicable governmental laws,
+   regulations and orders, including without limitation those relating
+   to export and import control.
+
+5. The Software is provided "AS IS" and neither MGH nor any
+   contributor to the software (each a "Contributor") shall have any
+   obligation to provide maintenance, support, updates, enhancements
+   or modifications thereto.  MGH AND ALL CONTRIBUTORS SPECIFICALLY
+   DISCLAIM ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING,
+   BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR
+   A PARTICULAR PURPOSE AND NON-INFRINGEMENT.  IN NO EVENT SHALL MGH
+   OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
+   SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES HOWEVER
+   CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY RELATED TO
+   THE SOFTWARE, EVEN IF MGH OR ANY CONTRIBUTOR HAS BEEN ADVISED OF
+   THE POSSIBILITY OF SUCH DAMAGES.  TO THE MAXIMUM EXTENT NOT
+   PROHIBITED BY LAW OR REGULATION, YOU FURTHER ASSUME ALL LIABILITY
+   FOR YOUR USE, REPRODUCTION, MAKING OF DERIVATIVE WORKS, DISPLAY,
+   LICENSE OR DISTRIBUTION OF THE SOFTWARE AND AGREE TO INDEMNIFY AND
+   HOLD HARMLESS MGH AND ALL CONTRIBUTORS FROM AND AGAINST ANY AND ALL
+   CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS ARISING THEREFROM.
+
+6. None of the names, logos or trademarks of MGH or any of MGH's
+   affiliates or any of the Contributors, or any funding agency, may
+   be used to endorse or promote products produced in whole or in part
+   by operation of the Software or derived from or based on the
+   Software without specific prior written permission from the
+   applicable party.
+
+7. Any use, reproduction or distribution of the Software which is not
+   in accordance with this Software License shall automatically revoke
+   all rights granted to you under this Software License and render
+   Paragraphs 1 and 2 of this Software License null and void.
+
+8. This Software License does not grant any rights in or to any
+   intellectual property owned by MGH or any Contributor except those
+   rights expressly granted hereunder.
+


Property changes on: trunk/packages/plastimatch/trunk/debian/copyright
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/plastimatch/trunk/debian/rules
===================================================================
--- trunk/packages/plastimatch/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/plastimatch/trunk/debian/rules	2011-06-07 01:01:17 UTC (rev 6921)
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+	dh $@ 


Property changes on: trunk/packages/plastimatch/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/plastimatch/trunk/debian/source/format
===================================================================
--- trunk/packages/plastimatch/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/plastimatch/trunk/debian/source/format	2011-06-07 01:01:17 UTC (rev 6921)
@@ -0,0 +1 @@
+3.0 (quilt)


Property changes on: trunk/packages/plastimatch/trunk/debian/source/format
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/plastimatch/trunk/debian/watch
===================================================================
--- trunk/packages/plastimatch/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/plastimatch/trunk/debian/watch	2011-06-07 01:01:17 UTC (rev 6921)
@@ -0,0 +1,2 @@
+version=3
+http://forge.abcd.harvard.edu/gf/project/plastimatch/frs/ .*/plastimatch-(.+)-.*-Source.tar.bz2


Property changes on: trunk/packages/plastimatch/trunk/debian/watch
___________________________________________________________________
Added: svn:executable
   + *

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