[med-svn] r7177 - trunk/packages/R/r-cran-qvalue/trunk/debian

Charles Plessy plessy at alioth.debian.org
Wed Jun 29 04:31:04 UTC 2011 

Author: plessy
Date: 2011-06-29 04:31:04 +0000 (Wed, 29 Jun 2011)
New Revision: 7177

Modified:
   trunk/packages/R/r-cran-qvalue/trunk/debian/changelog
   trunk/packages/R/r-cran-qvalue/trunk/debian/compat
   trunk/packages/R/r-cran-qvalue/trunk/debian/control
   trunk/packages/R/r-cran-qvalue/trunk/debian/copyright
   trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml
Log:
New upstream version, plus minor packaging improvements.

  * debian/control
    - Allow uploade by Debian Maintainers.
    - Use Debhelper 8 (debian/compat).
    - Incremented Standards-Version to reflect conformance with Policy 3.9.2.
      (no changes needed)
    - Corrected VCS URLs.
  * debian/copyright converted to machine-readable DEP 5 format.


Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/changelog	2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/changelog	2011-06-29 04:31:04 UTC (rev 7177)
@@ -1,3 +1,16 @@
+r-cran-qvalue (1.26.0-1) unstable; urgency=low
+
+  * New upstream version.
+  * debian/control:
+    - Allow uploade by Debian Maintainers.
+    - Use Debhelper 8 (debian/compat).
+    - Incremented Standards-Version to reflect conformance with Policy 3.9.2.
+      (no changes needed)
+    - Corrected VCS URLs.
+  * debian/copyright converted to machine-readable DEP 5 format.
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 29 Jun 2011 13:14:28 +0900
+
 r-cran-qvalue (1.24.0-1) unstable; urgency=low
 
   * New upstream version
@@ -2,3 +15,3 @@
   * Added myself to uploaders
-  * debhelper version >= 7.1)
+  * debhelper version (>= 7.1)
   * Standards-Version: 3.9.1 (no changes needed)
@@ -26,7 +39,7 @@
 
 r-cran-qvalue (1.18.0-2) unstable; urgency=low
 
-  * Rebuilt against R 2.10.0 because of its new documentation system. 
+  * Rebuilt against R 2.10.0 because of its new documentation system.
   * debian/control:
     - Removed version in dependence to R packages (satisfied in Lenny).
     - Incremented Standards-Version to reflect conformance with Policy 3.8.3

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/compat	2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/compat	2011-06-29 04:31:04 UTC (rev 7177)
@@ -1 +1 @@
-7
+8

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/control	2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/control	2011-06-29 04:31:04 UTC (rev 7177)
@@ -4,11 +4,12 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>,
  Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.1), cdbs, r-base-dev
-Standards-Version: 3.9.1
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 8), cdbs, r-base-dev
+Standards-Version: 3.9.2
 Homepage: http://cran.r-project.org/web/packages/qvalue
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-qvalue/trunk/
 
 Package: r-cran-qvalue
 Architecture: all

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/copyright	2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/copyright	2011-06-29 04:31:04 UTC (rev 7177)
@@ -1,29 +1,20 @@
-Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
+Format: http://dep.debian.net/deps/dep5/
+Source: http://cran.r-project.org/src/contrib/qvalue_1.26.0.tar.gz
 
-Name: qvalue
-Contact: John D. Storey <jstorey at u.washington.edu>
-Source: http://cran.r-project.org/src/contrib/qvalue_1.20.0.tar.gz
-
 Copyright: © 2006-2010 Alan Dabney and John D. Storey
 License: LGPL-3+
-	
-	This program is free software: you can redistribute it and/or modify
-	it under the terms of the GNU Lesser General Public License as published by
-	the Free Software Foundation, either version 3 of the License, or
-	(at your option) any later version.
-	 
-	This program is distributed in the hope that it will be useful,
-	but WITHOUT ANY WARRANTY; without even the implied warranty of
-	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-	GNU General Public License for more details.
-	 
-	You should have received a copy of the GNU Lesser General Public License
-	along with this program.  If not, see <http://www.gnu.org/licenses/>.
-
-On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
-in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license
-version 3 is included in the file ‘/usr/share/common-licenses/GPL-3’.
-
-This package was created by Steffen Moeller <moeller at debian.org>,
-based on work for the r-cran-rodbc package of Dirk
-Eddelbuettel <edd at debian.org>.
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ . 
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+Comment: On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
+ in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license
+ version 3 is included in the file ‘/usr/share/common-licenses/GPL-3’.

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml	2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml	2011-06-29 04:31:04 UTC (rev 7177)
@@ -5,16 +5,15 @@
 Homepage: http://cran.r-project.org/web/packages/qvalue/
 Name: qvalue
 PMID: 12883005
-Reference: |
- @article{John D.Storey08052003,
- author = {Storey, John D. and Tibshirani, Robert},
- title={{Statistical significance for genomewide studies}},
- journal = {Proceedings of the National Academy of Sciences of the United States of America},
- volume = {100},
- number = {16},
- pages = {9440-9445},
- doi = {10.1073/pnas.1530509100},
- year = {2003},
- URL = {http://www.pnas.org/content/100/16/9440.abstract},
- eprint = {http://www.pnas.org/content/100/16/9440.full.pdf+html}
- }
+Reference:
+ article: John D.Storey08052003
+ author: Storey, John D. and Tibshirani, Robert
+ title: Statistical significance for genomewide studies
+ journal: Proceedings of the National Academy of Sciences of the United States of America
+ volume: 100
+ number: 16
+ pages: 9440-9445
+ doi: 10.1073/pnas.1530509100
+ year: 2003
+ URL: http://www.pnas.org/content/100/16/9440.abstract
+ eprint: http://www.pnas.org/content/100/16/9440.full.pdf+html

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