[med-svn] r7178 - in trunk/packages/R/r-cran-qvalue/tags: . 1.26.0-1/debian
Charles Plessy
plessy at alioth.debian.org
Wed Jun 29 04:31:52 UTC 2011
Author: plessy
Date: 2011-06-29 04:31:51 +0000 (Wed, 29 Jun 2011)
New Revision: 7178
Added:
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/changelog
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/compat
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/control
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/copyright
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/upstream-metadata.yaml
Removed:
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/changelog
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/compat
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/control
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/copyright
trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/upstream-metadata.yaml
Log:
[svn-buildpackage] Tagging r-cran-qvalue 1.26.0-1
Deleted: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/changelog 2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/changelog 2011-06-29 04:31:51 UTC (rev 7178)
@@ -1,64 +0,0 @@
-r-cran-qvalue (1.24.0-1) unstable; urgency=low
-
- * New upstream version
- * Added myself to uploaders
- * debhelper version >= 7.1)
- * Standards-Version: 3.9.1 (no changes needed)
- * debian/source/format: 3.0 (quilt)
- * debian/rules:
- - Fixed copy-n-pasto in header comments
- - Make sure installed docs will not have executable bit set
- * debian/copyright: Fixed copyright notice
- * debian/README.Debian: Give better advise for testing the package
-
- -- Andreas Tille <tille at debian.org> Mon, 22 Nov 2010 13:23:45 +0100
-
-r-cran-qvalue (1.20.0-1) unstable; urgency=low
-
- * New upstream release.
- * Require a number equal or superior than the R version the package was built
- with, using a R:Depends substvar (debian/control, debian/rules).
- * Use Debhelper's ${misc:Depends} and removed ${shlibs:Depends}, as the
- package is architecture-independent.
- * Added notes to explain how this package is tested (debian/README.Debian).
-
- -- Charles Plessy <plessy at debian.org> Sun, 29 Nov 2009 13:35:52 +0900
-
-r-cran-qvalue (1.18.0-2) unstable; urgency=low
-
- * Rebuilt against R 2.10.0 because of its new documentation system.
- * debian/control:
- - Removed version in dependence to R packages (satisfied in Lenny).
- - Incremented Standards-Version to reflect conformance with Policy 3.8.3
- (no changes needed).
- * Added various informations in debian/upstream-metadata.yaml.
- * debian/copyright adapted to the latest experimentation on the
- machine-readable format.
-
- -- Charles Plessy <plessy at debian.org> Thu, 22 Oct 2009 08:56:08 +0900
-
-r-cran-qvalue (1.18.0-1) unstable; urgency=low
-
- * New upstream release: changes in documentation and bug corrected
- for TCL/Tk support.
- * debian/control:
- - Added myself to the Uploaders.
- - Changed section to ‘gnu-r’ and incremented Standards-Version to to
- reflect conformance with the Policy 3.8.2.
- - Use Debhelper 7 (debian/compat).
- - Added VCS URLs.
-
- -- Charles Plessy <plessy at debian.org> Fri, 26 Jun 2009 12:57:09 +0900
-
-r-cran-qvalue (1.1-2) unstable; urgency=low
-
- * Fixed lintian warnings
- * Removed Dirk from Uploaders
-
- -- Steffen Moeller <moeller at debian.org> Wed, 14 Jan 2009 18:37:16 +0100
-
-r-cran-qvalue (1.1-1) unstable; urgency=low
-
- * Initial release (closes: #49212).
-
- -- Steffen Moeller <moeller at debian.org> Wed, 23 Jul 2008 23:29:22 +0200
Copied: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/changelog (from rev 7177, trunk/packages/R/r-cran-qvalue/trunk/debian/changelog)
===================================================================
--- trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/changelog (rev 0)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/changelog 2011-06-29 04:31:51 UTC (rev 7178)
@@ -0,0 +1,77 @@
+r-cran-qvalue (1.26.0-1) unstable; urgency=low
+
+ * New upstream version.
+ * debian/control:
+ - Allow uploade by Debian Maintainers.
+ - Use Debhelper 8 (debian/compat).
+ - Incremented Standards-Version to reflect conformance with Policy 3.9.2.
+ (no changes needed)
+ - Corrected VCS URLs.
+ * debian/copyright converted to machine-readable DEP 5 format.
+
+ -- Charles Plessy <plessy at debian.org> Wed, 29 Jun 2011 13:14:28 +0900
+
+r-cran-qvalue (1.24.0-1) unstable; urgency=low
+
+ * New upstream version
+ * Added myself to uploaders
+ * debhelper version (>= 7.1)
+ * Standards-Version: 3.9.1 (no changes needed)
+ * debian/source/format: 3.0 (quilt)
+ * debian/rules:
+ - Fixed copy-n-pasto in header comments
+ - Make sure installed docs will not have executable bit set
+ * debian/copyright: Fixed copyright notice
+ * debian/README.Debian: Give better advise for testing the package
+
+ -- Andreas Tille <tille at debian.org> Mon, 22 Nov 2010 13:23:45 +0100
+
+r-cran-qvalue (1.20.0-1) unstable; urgency=low
+
+ * New upstream release.
+ * Require a number equal or superior than the R version the package was built
+ with, using a R:Depends substvar (debian/control, debian/rules).
+ * Use Debhelper's ${misc:Depends} and removed ${shlibs:Depends}, as the
+ package is architecture-independent.
+ * Added notes to explain how this package is tested (debian/README.Debian).
+
+ -- Charles Plessy <plessy at debian.org> Sun, 29 Nov 2009 13:35:52 +0900
+
+r-cran-qvalue (1.18.0-2) unstable; urgency=low
+
+ * Rebuilt against R 2.10.0 because of its new documentation system.
+ * debian/control:
+ - Removed version in dependence to R packages (satisfied in Lenny).
+ - Incremented Standards-Version to reflect conformance with Policy 3.8.3
+ (no changes needed).
+ * Added various informations in debian/upstream-metadata.yaml.
+ * debian/copyright adapted to the latest experimentation on the
+ machine-readable format.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 22 Oct 2009 08:56:08 +0900
+
+r-cran-qvalue (1.18.0-1) unstable; urgency=low
+
+ * New upstream release: changes in documentation and bug corrected
+ for TCL/Tk support.
+ * debian/control:
+ - Added myself to the Uploaders.
+ - Changed section to ‘gnu-r’ and incremented Standards-Version to to
+ reflect conformance with the Policy 3.8.2.
+ - Use Debhelper 7 (debian/compat).
+ - Added VCS URLs.
+
+ -- Charles Plessy <plessy at debian.org> Fri, 26 Jun 2009 12:57:09 +0900
+
+r-cran-qvalue (1.1-2) unstable; urgency=low
+
+ * Fixed lintian warnings
+ * Removed Dirk from Uploaders
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 14 Jan 2009 18:37:16 +0100
+
+r-cran-qvalue (1.1-1) unstable; urgency=low
+
+ * Initial release (closes: #49212).
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 23 Jul 2008 23:29:22 +0200
Deleted: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/compat
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/compat 2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/compat 2011-06-29 04:31:51 UTC (rev 7178)
@@ -1 +0,0 @@
-7
Copied: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/compat (from rev 7177, trunk/packages/R/r-cran-qvalue/trunk/debian/compat)
===================================================================
--- trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/compat (rev 0)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/compat 2011-06-29 04:31:51 UTC (rev 7178)
@@ -0,0 +1 @@
+8
Deleted: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/control
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/control 2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/control 2011-06-29 04:31:51 UTC (rev 7178)
@@ -1,25 +0,0 @@
-Source: r-cran-qvalue
-Section: gnu-r
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.1), cdbs, r-base-dev
-Standards-Version: 3.9.1
-Homepage: http://cran.r-project.org/web/packages/qvalue
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/
-
-Package: r-cran-qvalue
-Architecture: all
-Depends: ${R:Depends}, ${misc:Depends}
-Description: GNU R package for Q-value estimation for FDR control
- This package takes a list of p-values resulting from the simultaneous
- testing of many hypotheses and estimates their q-values. The
- q-value of a test measures the proportion of false positives incurred
- (called the false discovery rate) when that particular test is called
- significant. Various plots are automatically generated, allowing one
- to make sensible significance cut-offs. Several mathematical results
- have recently been shown on the conservative accuracy of the estimated
- q-values from this software. The software can be applied to problems
- in genomics, brain imaging, astrophysics, and data mining.
Copied: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/control (from rev 7177, trunk/packages/R/r-cran-qvalue/trunk/debian/control)
===================================================================
--- trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/control (rev 0)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/control 2011-06-29 04:31:51 UTC (rev 7178)
@@ -0,0 +1,26 @@
+Source: r-cran-qvalue
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 8), cdbs, r-base-dev
+Standards-Version: 3.9.2
+Homepage: http://cran.r-project.org/web/packages/qvalue
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-qvalue/trunk/
+
+Package: r-cran-qvalue
+Architecture: all
+Depends: ${R:Depends}, ${misc:Depends}
+Description: GNU R package for Q-value estimation for FDR control
+ This package takes a list of p-values resulting from the simultaneous
+ testing of many hypotheses and estimates their q-values. The
+ q-value of a test measures the proportion of false positives incurred
+ (called the false discovery rate) when that particular test is called
+ significant. Various plots are automatically generated, allowing one
+ to make sensible significance cut-offs. Several mathematical results
+ have recently been shown on the conservative accuracy of the estimated
+ q-values from this software. The software can be applied to problems
+ in genomics, brain imaging, astrophysics, and data mining.
Deleted: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/copyright 2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/copyright 2011-06-29 04:31:51 UTC (rev 7178)
@@ -1,29 +0,0 @@
-Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
-
-Name: qvalue
-Contact: John D. Storey <jstorey at u.washington.edu>
-Source: http://cran.r-project.org/src/contrib/qvalue_1.20.0.tar.gz
-
-Copyright: © 2006-2010 Alan Dabney and John D. Storey
-License: LGPL-3+
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU Lesser General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU Lesser General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
-in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license
-version 3 is included in the file ‘/usr/share/common-licenses/GPL-3’.
-
-This package was created by Steffen Moeller <moeller at debian.org>,
-based on work for the r-cran-rodbc package of Dirk
-Eddelbuettel <edd at debian.org>.
Copied: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/copyright (from rev 7177, trunk/packages/R/r-cran-qvalue/trunk/debian/copyright)
===================================================================
--- trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/copyright (rev 0)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/copyright 2011-06-29 04:31:51 UTC (rev 7178)
@@ -0,0 +1,20 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: http://cran.r-project.org/src/contrib/qvalue_1.26.0.tar.gz
+
+Copyright: © 2006-2010 Alan Dabney and John D. Storey
+License: LGPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+Comment: On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
+ in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license
+ version 3 is included in the file ‘/usr/share/common-licenses/GPL-3’.
Deleted: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml 2011-06-28 14:36:15 UTC (rev 7176)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/upstream-metadata.yaml 2011-06-29 04:31:51 UTC (rev 7178)
@@ -1,20 +0,0 @@
-Bioconductor: http://www.bioconductor.org/packages/bioc/html/qvalue.html
-Contact: John D. Storey <jstorey at u.washington.edu>
-CRAN: http://cran.r-project.org/web/packages/qvalue/
-DOI: 10.1073/pnas.1530509100
-Homepage: http://cran.r-project.org/web/packages/qvalue/
-Name: qvalue
-PMID: 12883005
-Reference: |
- @article{John D.Storey08052003,
- author = {Storey, John D. and Tibshirani, Robert},
- title={{Statistical significance for genomewide studies}},
- journal = {Proceedings of the National Academy of Sciences of the United States of America},
- volume = {100},
- number = {16},
- pages = {9440-9445},
- doi = {10.1073/pnas.1530509100},
- year = {2003},
- URL = {http://www.pnas.org/content/100/16/9440.abstract},
- eprint = {http://www.pnas.org/content/100/16/9440.full.pdf+html}
- }
Copied: trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/upstream-metadata.yaml (from rev 7177, trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml)
===================================================================
--- trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/upstream-metadata.yaml (rev 0)
+++ trunk/packages/R/r-cran-qvalue/tags/1.26.0-1/debian/upstream-metadata.yaml 2011-06-29 04:31:51 UTC (rev 7178)
@@ -0,0 +1,19 @@
+Bioconductor: http://www.bioconductor.org/packages/bioc/html/qvalue.html
+Contact: John D. Storey <jstorey at u.washington.edu>
+CRAN: http://cran.r-project.org/web/packages/qvalue/
+DOI: 10.1073/pnas.1530509100
+Homepage: http://cran.r-project.org/web/packages/qvalue/
+Name: qvalue
+PMID: 12883005
+Reference:
+ article: John D.Storey08052003
+ author: Storey, John D. and Tibshirani, Robert
+ title: Statistical significance for genomewide studies
+ journal: Proceedings of the National Academy of Sciences of the United States of America
+ volume: 100
+ number: 16
+ pages: 9440-9445
+ doi: 10.1073/pnas.1530509100
+ year: 2003
+ URL: http://www.pnas.org/content/100/16/9440.abstract
+ eprint: http://www.pnas.org/content/100/16/9440.full.pdf+html
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