[med-svn] r7182 - in trunk/packages/R/r-cran-genetics/tags: . 1.3.6-2/debian
Charles Plessy
plessy at alioth.debian.org
Wed Jun 29 14:40:36 UTC 2011
Author: plessy
Date: 2011-06-29 14:40:35 +0000 (Wed, 29 Jun 2011)
New Revision: 7182
Added:
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/README.test
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/changelog
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/compat
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/control
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/copyright
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/docs
Removed:
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/README.Debian
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/changelog
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/compat
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/control
trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/copyright
Log:
[svn-buildpackage] Tagging r-cran-genetics 1.3.6-2
Deleted: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/README.Debian
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/README.Debian 2011-06-29 04:31:51 UTC (rev 7178)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/README.Debian 2011-06-29 14:40:35 UTC (rev 7182)
@@ -1,8 +0,0 @@
-genetics CRAN package for Debian
---------------------------------
-
-Note on testing:
-
-Since this package does not have regression checks nor instructions for
-performing some manually, it was not thoroughly tested before its upload to the
-Debian archive.
Copied: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/README.test (from rev 7181, trunk/packages/R/r-cran-genetics/trunk/debian/README.test)
===================================================================
--- trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/README.test (rev 0)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/README.test 2011-06-29 14:40:35 UTC (rev 7182)
@@ -0,0 +1,2 @@
+After installing this package, you can test it with the commands in the
+directory “/usr/share/doc/r-cran-genetics/tests”.
Deleted: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/changelog 2011-06-29 04:31:51 UTC (rev 7178)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/changelog 2011-06-29 14:40:35 UTC (rev 7182)
@@ -1,64 +0,0 @@
-r-cran-genetics (1.3.6-1) unstable; urgency=low
-
- * New upstream version
- * Built with local variant of cran.mk to avoid
- inclusion of simple-patchsys for build process
- in context of source/format 3.0 (quilt).
-
- -- Steffen Moeller <moeller at debian.org> Sat, 05 Feb 2011 14:51:22 +0100
-
-r-cran-genetics (1.3.5-1) unstable; urgency=low
-
- * New upstream version
- * debian/control:
- - Standards-Version: 3.9.1 (no changes needed)
- - + debian/rules: Require a number equal or superior than the R version the
- package was built with, using a R:Depends substvar.
- * debian/source/format: 3.0 (quilt)
- * debian/rules: No executable flag for PDF files
-
- -- Andreas Tille <tille at debian.org> Mon, 24 Jan 2011 17:08:21 +0100
-
-r-cran-genetics (1.3.4-1) unstable; urgency=low
-
- [ Charles Plessy ]
- * Rebuilt for R 2.10.0 (new documentation system).
- * debian/changelog:
- - Added a notice in the description that this package is obsolete.
- - New maintainer: the Debian Med packaging team.
- - Added myself to the uploaders.
- - Incremented Standards-Version to reflect conformance with Policy 3.8.3:
- Changed section to gnu-r.
- - Removed version in the dependency to r-base-core and r-base-dev.
- - Allow upload by DM uploaders.
- * Use Debhelper 7 (debian/control, debian/compat).
- * Conversion of debian/copyright to experimental machine-readable format.
- * Added debian/README.Debian to inform that this package is not thoroughly
- tested.
- * Added various informations about upstream in debian/upstream-metadata.yaml.
-
- [ Andreas Tille ]
- * Added myself to uploaders
-
- -- Andreas Tille <tille at debian.org> Mon, 02 Nov 2009 11:55:48 +0100
-
-r-cran-genetics (1.3.4-0.1) unstable; urgency=low
-
- * Non-maintainer upload
-
- * New upstream version released more than three months ago
-
- * debian/control: Added r-cran-gdata, r-cran-gtools, r-cran-vr
- to Build-Depends to fix FTBFS
-
- * debian/control: Removed myself from uploaders as
- - Steffen never asked me whether I wanted to be included
- - Steffen never removed me despite repeated requests to do so
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 29 Nov 2008 12:56:20 -0600
-
-r-cran-genetics (1.3.3-1) unstable; urgency=low
-
- * Initial release (closes: #492114).
-
- -- Steffen Moeller <moeller at debian.org> Wed, 23 Jul 2008 18:27:42 +0200
Copied: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/changelog (from rev 7181, trunk/packages/R/r-cran-genetics/trunk/debian/changelog)
===================================================================
--- trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/changelog (rev 0)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/changelog 2011-06-29 14:40:35 UTC (rev 7182)
@@ -0,0 +1,79 @@
+r-cran-genetics (1.3.6-2) unstable; urgency=low
+
+ * debian/control:
+ - (Build-)Depend on r-cran-mass, which provides r-cran-vr (LP: #755951).
+ - Corrected VCS URLs.
+ - Using Debhelper 8 (debian/compat)
+ - Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (no changes needed).
+ * Formatted debian/copyright to machine-readable DEP-5 format.
+ * Install tests in “/usr/share/doc/r-cran-genetics/tests” (debian/docs),
+ document them (debian/README.test), and remove wrong comment that no tests
+ are available (debian/README.Debian).
+
+ -- Charles Plessy <plessy at debian.org> Wed, 29 Jun 2011 23:25:13 +0900
+
+r-cran-genetics (1.3.6-1) unstable; urgency=low
+
+ * New upstream version
+ * Built with local variant of cran.mk to avoid
+ inclusion of simple-patchsys for build process
+ in context of source/format 3.0 (quilt).
+
+ -- Steffen Moeller <moeller at debian.org> Sat, 05 Feb 2011 14:51:22 +0100
+
+r-cran-genetics (1.3.5-1) unstable; urgency=low
+
+ * New upstream version
+ * debian/control:
+ - Standards-Version: 3.9.1 (no changes needed)
+ - + debian/rules: Require a number equal or superior than the R version the
+ package was built with, using a R:Depends substvar.
+ * debian/source/format: 3.0 (quilt)
+ * debian/rules: No executable flag for PDF files
+
+ -- Andreas Tille <tille at debian.org> Mon, 24 Jan 2011 17:08:21 +0100
+
+r-cran-genetics (1.3.4-1) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Rebuilt for R 2.10.0 (new documentation system).
+ * debian/changelog:
+ - Added a notice in the description that this package is obsolete.
+ - New maintainer: the Debian Med packaging team.
+ - Added myself to the uploaders.
+ - Incremented Standards-Version to reflect conformance with Policy 3.8.3:
+ Changed section to gnu-r.
+ - Removed version in the dependency to r-base-core and r-base-dev.
+ - Allow upload by DM uploaders.
+ * Use Debhelper 7 (debian/control, debian/compat).
+ * Conversion of debian/copyright to experimental machine-readable format.
+ * Added debian/README.Debian to inform that this package is not thoroughly
+ tested.
+ * Added various informations about upstream in debian/upstream-metadata.yaml.
+
+ [ Andreas Tille ]
+ * Added myself to uploaders
+
+ -- Andreas Tille <tille at debian.org> Mon, 02 Nov 2009 11:55:48 +0100
+
+r-cran-genetics (1.3.4-0.1) unstable; urgency=low
+
+ * Non-maintainer upload
+
+ * New upstream version released more than three months ago
+
+ * debian/control: Added r-cran-gdata, r-cran-goods, r-cran-vr
+ to Build-Depends to fix FTBFS
+
+ * debian/control: Removed myself from uploaders as
+ - Steffen never asked me whether I wanted to be included
+ - Steffen never removed me despite repeated requests to do so
+
+ -- Dirk Eddelbuettel <edd at debian.org> Sat, 29 Nov 2008 12:56:20 -0600
+
+r-cran-genetics (1.3.3-1) unstable; urgency=low
+
+ * Initial release (closes: #492114).
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 23 Jul 2008 18:27:42 +0200
Deleted: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/compat
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/compat 2011-06-29 04:31:51 UTC (rev 7178)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/compat 2011-06-29 14:40:35 UTC (rev 7182)
@@ -1 +0,0 @@
-7
Copied: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/compat (from rev 7181, trunk/packages/R/r-cran-genetics/trunk/debian/compat)
===================================================================
--- trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/compat (rev 0)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/compat 2011-06-29 14:40:35 UTC (rev 7182)
@@ -0,0 +1 @@
+8
Deleted: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/control
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/control 2011-06-29 04:31:51 UTC (rev 7178)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/control 2011-06-29 14:40:35 UTC (rev 7182)
@@ -1,32 +0,0 @@
-Source: r-cran-genetics
-Section: gnu-r
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Steffen Moeller <moeller at debian.org>,
- Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7), cdbs, r-base-dev, r-cran-combinat, r-cran-mvtnorm, r-cran-gdata, r-cran-gtools, r-cran-vr
-Standards-Version: 3.9.1
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-genetics/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-genetics/trunk/
-Homepage: http://cran.r-project.org/web/packages/genetics
-
-Package: r-cran-genetics
-Architecture: all
-Depends: ${R:Depends}, ${misc:Depends}, r-recommended, r-cran-gtools, r-cran-gdata, r-cran-combinat, r-cran-mvtnorm, r-cran-vr
-Description: GNU R package for population genetics
- Classes and methods for handling genetic data. Includes
- The package provides a library for the statistics environment R that
- contains classes to represent genotypes and haplotypes at single markers up
- to multiple markers on multiple chromosomes. Function include
- allele frequencies, flagging homo/heterozygotes, flagging carriers
- of certain alleles, estimating and testing for Hardy-Weinberg
- disequilibrium, estimating and testing for linkage disequilibrium,
- and more.
- .
- NOTE: THIS PACKAGE IS NOW OBSOLETE.
- .
- The R-Genetics project has developed an set of enhanced genetics
- packages to replace 'genetics'. Please visit the project homepage
- at http://rgenetics.org for information.
Copied: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/control (from rev 7181, trunk/packages/R/r-cran-genetics/trunk/debian/control)
===================================================================
--- trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/control (rev 0)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/control 2011-06-29 14:40:35 UTC (rev 7182)
@@ -0,0 +1,32 @@
+Source: r-cran-genetics
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8), cdbs, r-base-dev, r-cran-combinat, r-cran-mvtnorm, r-cran-gdata, r-cran-gtools, r-cran-mass
+Standards-Version: 3.9.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-genetics/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-genetics/trunk/
+Homepage: http://cran.r-project.org/web/packages/genetics
+
+Package: r-cran-genetics
+Architecture: all
+Depends: ${R:Depends}, ${misc:Depends}, r-recommended, r-cran-gtools, r-cran-gdata, r-cran-combinat, r-cran-mvtnorm, r-cran-mass
+Description: GNU R package for population genetics
+ Classes and methods for handling genetic data. Includes
+ The package provides a library for the statistics environment R that
+ contains classes to represent genotypes and haplotypes at single markers up
+ to multiple markers on multiple chromosomes. Function include
+ allele frequencies, flagging homo/heterozygotes, flagging carriers
+ of certain alleles, estimating and testing for Hardy-Weinberg
+ disequilibrium, estimating and testing for linkage disequilibrium,
+ and more.
+ .
+ NOTE: THIS PACKAGE IS NOW OBSOLETE.
+ .
+ The R-Genetics project has developed an set of enhanced genetics
+ packages to replace 'genetics'. Please visit the project homepage
+ at http://rgenetics.org for information.
Deleted: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/copyright 2011-06-29 04:31:51 UTC (rev 7178)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/copyright 2011-06-29 14:40:35 UTC (rev 7182)
@@ -1,57 +0,0 @@
-Name : genetics
-Contact : Gregory Warnes <warnes at bst.rochester.edu>
-Source : http://cran.r-project.org/src/contrib/
-
-Copyright :
- Genetics is copyright 2003-2008 of Gregory Warnes
- <warnes at bst.rochester.edu>, with contributions from David Duffy
- <davidD at qumr.edu.au>, Gregor Gorjanc, Friedrich Leisch, and Michael Man.
-
-License: GPL
-
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License along
- with this program; if not, write to the Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-On a Debian GNU/Linux system, the GNU General Public License version 2 is
-included in the file ‘/usr/share/common-licenses/GPL-2’.
-
-The package was renamed from its upstream name 'genetics' to
-'r-cran-genetics' to highlight the fact that is it a package for R within
-the CRAN archive.
-
-
-File: inst/doc/Rnews.sty
-Copyright:
-License:
- For the copyright see the source file.
-
- Any modified versions of this file must be renamed
- with new filenames distinct from Rnews.sty.
-
- For distribution of the original source see the terms
- for copying and modification in the file Rnews.dtx.
-
- This generated file may be distributed as long as the
- original source files, as listed above, are part of the
- same distribution. (The sources need not necessarily be
- in the same archive or directory.)
-
-
-Files: debian/*
-Copyright: © 2008 Steffen Moeller <moeller at debian.org>
-License: same as genetics
-
-This package was created by Steffen Moeller <moeller at debian.org>,
-based on work for the r-cran-rodbc package of Dirk
-Eddelbuettel <edd at debian.org>.
Copied: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/copyright (from rev 7181, trunk/packages/R/r-cran-genetics/trunk/debian/copyright)
===================================================================
--- trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/copyright (rev 0)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/copyright 2011-06-29 14:40:35 UTC (rev 7182)
@@ -0,0 +1,48 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: http://cran.r-project.org/src/contrib/genetics_1.3.6.tar.gz
+
+Files: *
+Copyright : Genetics is copyright 2003-2008 of Gregory Warnes <warnes at bst.rochester.edu>,
+ with contributions from David Duffy <davidD at qumr.edu.au>,
+ Gregor Gorjanc,
+ Friedrich Leisch,
+ and Michael Man.
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+Comment: On a Debian GNU/Linux system, the GNU General Public License
+ version 2 is included in the file ‘/usr/share/common-licenses/GPL-2’.
+
+Files: inst/doc/Rnews.sty
+Copyright: see the source file.
+License: Rnews.sty
+ For the copyright see the source file.
+ .
+ Any modified versions of this file must be renamed
+ with new filenames distinct from Rnews.sty.
+ .
+ For distribution of the original source see the terms
+ for copying and modification in the file Rnews.dtx.
+ .
+ This generated file may be distributed as long as the
+ original source files, as listed above, are part of the
+ same distribution. (The sources need not necessarily be
+ in the same archive or directory.)
+
+Files: debian/*
+Copyright: © 2008 Steffen Moeller <moeller at debian.org>
+License: same-as-genetics
+ This package was created by Steffen Moeller <moeller at debian.org>,
+ based on work for the r-cran-rodbc package of Dirk
+ Eddelbuettel <edd at debian.org>.
Copied: trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/docs (from rev 7181, trunk/packages/R/r-cran-genetics/trunk/debian/docs)
===================================================================
--- trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/docs (rev 0)
+++ trunk/packages/R/r-cran-genetics/tags/1.3.6-2/debian/docs 2011-06-29 14:40:35 UTC (rev 7182)
@@ -0,0 +1 @@
+tests
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