[med-svn] [SCM] cufflinks branch, master, updated. upstream/0.9.3-21-g7df8ccc

Alex Mestiashvili alex at biotec.tu-dresden.de
Wed May 25 07:53:10 UTC 2011


The following commit has been merged in the master branch:
commit 7df8ccca5f3cdfa35b3477a885615dc4af058fd4
Author: Alex Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Wed May 25 09:45:22 2011 +0200

    fixing rep

diff --git a/configure.orig b/configure.orig
deleted file mode 100755
index ae66f5e..0000000
--- a/configure.orig
+++ /dev/null
@@ -1,8651 +0,0 @@
-#! /bin/sh
-# Guess values for system-dependent variables and create Makefiles.
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-#
-# Report bugs to <cole at cs.umd.edu>.
-#
-# Copyright (C) 2003 Free Software Foundation, Inc.
-# This configure script is free software; the Free Software Foundation
-# gives unlimited permission to copy, distribute and modify it.
-## --------------------- ##
-## M4sh Initialization.  ##
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-  NULLCMD=:
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-  # is contrary to our usage.  Disable this feature.
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-\`configure' configures cufflinks 1.0.2 to adapt to many kinds of systems.
-
-Usage: $0 [OPTION]... [VAR=VALUE]...
-
-To assign environment variables (e.g., CC, CFLAGS...), specify them as
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-Defaults for the options are specified in brackets.
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-Configuration:
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-_ACEOF
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-  --exec-prefix=EPREFIX   install architecture-dependent files in EPREFIX
-			  [PREFIX]
-
-By default, \`make install' will install all the files in
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-For better control, use the options below.
-
-Fine tuning of the installation directories:
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-  --sbindir=DIR          system admin executables [EPREFIX/sbin]
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-  cat <<\_ACEOF
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-_ACEOF
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-if test -n "$ac_init_help"; then
-  case $ac_init_help in
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-
-Optional Features:
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-  --enable-debug          enable debugging info (default is no)
-  --enable-optim[=0|1|2|3]
-                          set optimization level (default is 3)
-  --enable-profiling        enable profiling with google-perftools
-
-Optional Packages:
-  --with-PACKAGE[=ARG]    use PACKAGE [ARG=yes]
-  --without-PACKAGE       do not use PACKAGE (same as --with-PACKAGE=no)
-  --with-boost[=DIR]
-                          use boost (default is yes) - it is possible to
-                          specify the root directory for boost (optional)
-  --with-boost-libdir=LIB_DIR
-                          Force given directory for boost libraries. Note that
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-                          this parameter only if default library detection
-                          fails and you know exactly where your boost
-                          libraries are located.
-  --with-bam[=DIR]  use BAM libraries (default is yes) - it is possible
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-  --with-bam-libdir=LIB_DIR
-                          Force given directory for bam libraries. Note that
-                          this will overwrite library path detection, so use
-                          this parameter only if default library detection
-                          fails and you know exactly where your bam libraries
-                          are located.
-  --with-boost-thread[=special-lib]
-                          use the Thread library from boost - it is possible
-                          to specify a certain library for the linker e.g.
-                          --with-boost-thread=boost_thread-gcc-mt
-  --with-zlib=DIR root directory path of zlib installation defaults to
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-
-Some influential environment variables:
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-  CC          C compiler command
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-
-Use these variables to override the choices made by `configure' or to help
-it to find libraries and programs with nonstandard names/locations.
-
-Report bugs to <cole at cs.umd.edu>.
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-fi
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-.) ac_abs_builddir="$ac_dir";;
-*)
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-  .) ac_abs_builddir=`pwd`;;
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-.) ac_abs_top_builddir=${ac_top_builddir}.;;
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-  case ${ac_top_builddir}. in
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-  [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
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-.) ac_abs_top_srcdir=$ac_top_srcdir;;
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-  [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$ac_top_srcdir;;
-  *) ac_abs_top_srcdir=$ac_abs_builddir/$ac_top_srcdir;;
-  esac;;
-esac
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-    cd $ac_dir
-    # Check for guested configure; otherwise get Cygnus style configure.
-    if test -f $ac_srcdir/configure.gnu; then
-      echo
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-      echo
-      $SHELL $ac_srcdir/configure  --help=recursive
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-	   test -f $ac_srcdir/configure.in; then
-      echo
-      $ac_configure --help
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-      echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
-    fi
-    cd $ac_popdir
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-test -n "$ac_init_help" && exit 0
-if $ac_init_version; then
-  cat <<\_ACEOF
-cufflinks configure 1.0.2
-generated by GNU Autoconf 2.59
-
-Copyright (C) 2003 Free Software Foundation, Inc.
-This configure script is free software; the Free Software Foundation
-gives unlimited permission to copy, distribute and modify it.
-_ACEOF
-  exit 0
-fi
-exec 5>config.log
-cat >&5 <<_ACEOF
-This file contains any messages produced by compilers while
-running configure, to aid debugging if configure makes a mistake.
-
-It was created by cufflinks $as_me 1.0.2, which was
-generated by GNU Autoconf 2.59.  Invocation command line was
-
-  $ $0 $@
-
-_ACEOF
-{
-cat <<_ASUNAME
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-uname -r = `(uname -r) 2>/dev/null || echo unknown`
-uname -s = `(uname -s) 2>/dev/null || echo unknown`
-uname -v = `(uname -v) 2>/dev/null || echo unknown`
-
-/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown`
-/bin/uname -X     = `(/bin/uname -X) 2>/dev/null     || echo unknown`
-
-/bin/arch              = `(/bin/arch) 2>/dev/null              || echo unknown`
-/usr/bin/arch -k       = `(/usr/bin/arch -k) 2>/dev/null       || echo unknown`
-/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
-hostinfo               = `(hostinfo) 2>/dev/null               || echo unknown`
-/bin/machine           = `(/bin/machine) 2>/dev/null           || echo unknown`
-/usr/bin/oslevel       = `(/usr/bin/oslevel) 2>/dev/null       || echo unknown`
-/bin/universe          = `(/bin/universe) 2>/dev/null          || echo unknown`
-
-_ASUNAME
-
-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  echo "PATH: $as_dir"
-done
-
-} >&5
-
-cat >&5 <<_ACEOF
-
-
-## ----------- ##
-## Core tests. ##
-## ----------- ##
-
-_ACEOF
-
-
-# Keep a trace of the command line.
-# Strip out --no-create and --no-recursion so they do not pile up.
-# Strip out --silent because we don't want to record it for future runs.
-# Also quote any args containing shell meta-characters.
-# Make two passes to allow for proper duplicate-argument suppression.
-ac_configure_args=
-ac_configure_args0=
-ac_configure_args1=
-ac_sep=
-ac_must_keep_next=false
-for ac_pass in 1 2
-do
-  for ac_arg
-  do
-    case $ac_arg in
-    -no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;;
-    -q | -quiet | --quiet | --quie | --qui | --qu | --q \
-    | -silent | --silent | --silen | --sile | --sil)
-      continue ;;
-    *" "*|*"	"*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
-      ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
-    esac
-    case $ac_pass in
-    1) ac_configure_args0="$ac_configure_args0 '$ac_arg'" ;;
-    2)
-      ac_configure_args1="$ac_configure_args1 '$ac_arg'"
-      if test $ac_must_keep_next = true; then
-	ac_must_keep_next=false # Got value, back to normal.
-      else
-	case $ac_arg in
-	  *=* | --config-cache | -C | -disable-* | --disable-* \
-	  | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
-	  | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
-	  | -with-* | --with-* | -without-* | --without-* | --x)
-	    case "$ac_configure_args0 " in
-	      "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
-	    esac
-	    ;;
-	  -* ) ac_must_keep_next=true ;;
-	esac
-      fi
-      ac_configure_args="$ac_configure_args$ac_sep'$ac_arg'"
-      # Get rid of the leading space.
-      ac_sep=" "
-      ;;
-    esac
-  done
-done
-$as_unset ac_configure_args0 || test "${ac_configure_args0+set}" != set || { ac_configure_args0=; export ac_configure_args0; }
-$as_unset ac_configure_args1 || test "${ac_configure_args1+set}" != set || { ac_configure_args1=; export ac_configure_args1; }
-
-# When interrupted or exit'd, cleanup temporary files, and complete
-# config.log.  We remove comments because anyway the quotes in there
-# would cause problems or look ugly.
-# WARNING: Be sure not to use single quotes in there, as some shells,
-# such as our DU 5.0 friend, will then `close' the trap.
-trap 'exit_status=$?
-  # Save into config.log some information that might help in debugging.
-  {
-    echo
-
-    cat <<\_ASBOX
-## ---------------- ##
-## Cache variables. ##
-## ---------------- ##
-_ASBOX
-    echo
-    # The following way of writing the cache mishandles newlines in values,
-{
-  (set) 2>&1 |
-    case `(ac_space='"'"' '"'"'; set | grep ac_space) 2>&1` in
-    *ac_space=\ *)
-      sed -n \
-	"s/'"'"'/'"'"'\\\\'"'"''"'"'/g;
-	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='"'"'\\2'"'"'/p"
-      ;;
-    *)
-      sed -n \
-	"s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
-      ;;
-    esac;
-}
-    echo
-
-    cat <<\_ASBOX
-## ----------------- ##
-## Output variables. ##
-## ----------------- ##
-_ASBOX
-    echo
-    for ac_var in $ac_subst_vars
-    do
-      eval ac_val=$`echo $ac_var`
-      echo "$ac_var='"'"'$ac_val'"'"'"
-    done | sort
-    echo
-
-    if test -n "$ac_subst_files"; then
-      cat <<\_ASBOX
-## ------------- ##
-## Output files. ##
-## ------------- ##
-_ASBOX
-      echo
-      for ac_var in $ac_subst_files
-      do
-	eval ac_val=$`echo $ac_var`
-	echo "$ac_var='"'"'$ac_val'"'"'"
-      done | sort
-      echo
-    fi
-
-    if test -s confdefs.h; then
-      cat <<\_ASBOX
-## ----------- ##
-## confdefs.h. ##
-## ----------- ##
-_ASBOX
-      echo
-      sed "/^$/d" confdefs.h | sort
-      echo
-    fi
-    test "$ac_signal" != 0 &&
-      echo "$as_me: caught signal $ac_signal"
-    echo "$as_me: exit $exit_status"
-  } >&5
-  rm -f core *.core &&
-  rm -rf conftest* confdefs* conf$$* $ac_clean_files &&
-    exit $exit_status
-     ' 0
-for ac_signal in 1 2 13 15; do
-  trap 'ac_signal='$ac_signal'; { (exit 1); exit 1; }' $ac_signal
-done
-ac_signal=0
-
-# confdefs.h avoids OS command line length limits that DEFS can exceed.
-rm -rf conftest* confdefs.h
-# AIX cpp loses on an empty file, so make sure it contains at least a newline.
-echo >confdefs.h
-
-# Predefined preprocessor variables.
-
-cat >>confdefs.h <<_ACEOF
-#define PACKAGE_NAME "$PACKAGE_NAME"
-_ACEOF
-
-
-cat >>confdefs.h <<_ACEOF
-#define PACKAGE_TARNAME "$PACKAGE_TARNAME"
-_ACEOF
-
-
-cat >>confdefs.h <<_ACEOF
-#define PACKAGE_VERSION "$PACKAGE_VERSION"
-_ACEOF
-
-
-cat >>confdefs.h <<_ACEOF
-#define PACKAGE_STRING "$PACKAGE_STRING"
-_ACEOF
-
-
-cat >>confdefs.h <<_ACEOF
-#define PACKAGE_BUGREPORT "$PACKAGE_BUGREPORT"
-_ACEOF
-
-
-# Let the site file select an alternate cache file if it wants to.
-# Prefer explicitly selected file to automatically selected ones.
-if test -z "$CONFIG_SITE"; then
-  if test "x$prefix" != xNONE; then
-    CONFIG_SITE="$prefix/share/config.site $prefix/etc/config.site"
-  else
-    CONFIG_SITE="$ac_default_prefix/share/config.site $ac_default_prefix/etc/config.site"
-  fi
-fi
-for ac_site_file in $CONFIG_SITE; do
-  if test -r "$ac_site_file"; then
-    { echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
-echo "$as_me: loading site script $ac_site_file" >&6;}
-    sed 's/^/| /' "$ac_site_file" >&5
-    . "$ac_site_file"
-  fi
-done
-
-if test -r "$cache_file"; then
-  # Some versions of bash will fail to source /dev/null (special
-  # files actually), so we avoid doing that.
-  if test -f "$cache_file"; then
-    { echo "$as_me:$LINENO: loading cache $cache_file" >&5
-echo "$as_me: loading cache $cache_file" >&6;}
-    case $cache_file in
-      [\\/]* | ?:[\\/]* ) . $cache_file;;
-      *)                      . ./$cache_file;;
-    esac
-  fi
-else
-  { echo "$as_me:$LINENO: creating cache $cache_file" >&5
-echo "$as_me: creating cache $cache_file" >&6;}
-  >$cache_file
-fi
-
-# Check that the precious variables saved in the cache have kept the same
-# value.
-ac_cache_corrupted=false
-for ac_var in `(set) 2>&1 |
-	       sed -n 's/^ac_env_\([a-zA-Z_0-9]*\)_set=.*/\1/p'`; do
-  eval ac_old_set=\$ac_cv_env_${ac_var}_set
-  eval ac_new_set=\$ac_env_${ac_var}_set
-  eval ac_old_val="\$ac_cv_env_${ac_var}_value"
-  eval ac_new_val="\$ac_env_${ac_var}_value"
-  case $ac_old_set,$ac_new_set in
-    set,)
-      { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
-echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
-      ac_cache_corrupted=: ;;
-    ,set)
-      { echo "$as_me:$LINENO: error: \`$ac_var' was not set in the previous run" >&5
-echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
-      ac_cache_corrupted=: ;;
-    ,);;
-    *)
-      if test "x$ac_old_val" != "x$ac_new_val"; then
-	{ echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
-echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
-	{ echo "$as_me:$LINENO:   former value:  $ac_old_val" >&5
-echo "$as_me:   former value:  $ac_old_val" >&2;}
-	{ echo "$as_me:$LINENO:   current value: $ac_new_val" >&5
-echo "$as_me:   current value: $ac_new_val" >&2;}
-	ac_cache_corrupted=:
-      fi;;
-  esac
-  # Pass precious variables to config.status.
-  if test "$ac_new_set" = set; then
-    case $ac_new_val in
-    *" "*|*"	"*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
-      ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
-    *) ac_arg=$ac_var=$ac_new_val ;;
-    esac
-    case " $ac_configure_args " in
-      *" '$ac_arg' "*) ;; # Avoid dups.  Use of quotes ensures accuracy.
-      *) ac_configure_args="$ac_configure_args '$ac_arg'" ;;
-    esac
-  fi
-done
-if $ac_cache_corrupted; then
-  { echo "$as_me:$LINENO: error: changes in the environment can compromise the build" >&5
-echo "$as_me: error: changes in the environment can compromise the build" >&2;}
-  { { echo "$as_me:$LINENO: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&5
-echo "$as_me: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&2;}
-   { (exit 1); exit 1; }; }
-fi
-
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-cat >>confdefs.h <<\_ACEOF
-#define SVN_REVISION "2335"
-_ACEOF
-
-
-
-          ac_config_headers="$ac_config_headers config.h"
-
-ac_aux_dir=
-for ac_dir in build-aux $srcdir/build-aux; do
-  if test -f $ac_dir/install-sh; then
-    ac_aux_dir=$ac_dir
-    ac_install_sh="$ac_aux_dir/install-sh -c"
-    break
-  elif test -f $ac_dir/install.sh; then
-    ac_aux_dir=$ac_dir
-    ac_install_sh="$ac_aux_dir/install.sh -c"
-    break
-  elif test -f $ac_dir/shtool; then
-    ac_aux_dir=$ac_dir
-    ac_install_sh="$ac_aux_dir/shtool install -c"
-    break
-  fi
-done
-if test -z "$ac_aux_dir"; then
-  { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in build-aux $srcdir/build-aux" >&5
-echo "$as_me: error: cannot find install-sh or install.sh in build-aux $srcdir/build-aux" >&2;}
-   { (exit 1); exit 1; }; }
-fi
-ac_config_guess="$SHELL $ac_aux_dir/config.guess"
-ac_config_sub="$SHELL $ac_aux_dir/config.sub"
-ac_configure="$SHELL $ac_aux_dir/configure" # This should be Cygnus configure.
-
-am__api_version="1.9"
-# Find a good install program.  We prefer a C program (faster),
-# so one script is as good as another.  But avoid the broken or
-# incompatible versions:
-# SysV /etc/install, /usr/sbin/install
-# SunOS /usr/etc/install
-# IRIX /sbin/install
-# AIX /bin/install
-# AmigaOS /C/install, which installs bootblocks on floppy discs
-# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag
-# AFS /usr/afsws/bin/install, which mishandles nonexistent args
-# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
-# OS/2's system install, which has a completely different semantic
-# ./install, which can be erroneously created by make from ./install.sh.
-echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
-echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6
-if test -z "$INSTALL"; then
-if test "${ac_cv_path_install+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  # Account for people who put trailing slashes in PATH elements.
-case $as_dir/ in
-  ./ | .// | /cC/* | \
-  /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \
-  ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \
-  /usr/ucb/* ) ;;
-  *)
-    # OSF1 and SCO ODT 3.0 have their own names for install.
-    # Don't use installbsd from OSF since it installs stuff as root
-    # by default.
-    for ac_prog in ginstall scoinst install; do
-      for ac_exec_ext in '' $ac_executable_extensions; do
-	if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
-	  if test $ac_prog = install &&
-	    grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
-	    # AIX install.  It has an incompatible calling convention.
-	    :
-	  elif test $ac_prog = install &&
-	    grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
-	    # program-specific install script used by HP pwplus--don't use.
-	    :
-	  else
-	    ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
-	    break 3
-	  fi
-	fi
-      done
-    done
-    ;;
-esac
-done
-
-
-fi
-  if test "${ac_cv_path_install+set}" = set; then
-    INSTALL=$ac_cv_path_install
-  else
-    # As a last resort, use the slow shell script.  We don't cache a
-    # path for INSTALL within a source directory, because that will
-    # break other packages using the cache if that directory is
-    # removed, or if the path is relative.
-    INSTALL=$ac_install_sh
-  fi
-fi
-echo "$as_me:$LINENO: result: $INSTALL" >&5
-echo "${ECHO_T}$INSTALL" >&6
-
-# Use test -z because SunOS4 sh mishandles braces in ${var-val}.
-# It thinks the first close brace ends the variable substitution.
-test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'
-
-test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}'
-
-test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
-
-echo "$as_me:$LINENO: checking whether build environment is sane" >&5
-echo $ECHO_N "checking whether build environment is sane... $ECHO_C" >&6
-# Just in case
-sleep 1
-echo timestamp > conftest.file
-# Do `set' in a subshell so we don't clobber the current shell's
-# arguments.  Must try -L first in case configure is actually a
-# symlink; some systems play weird games with the mod time of symlinks
-# (eg FreeBSD returns the mod time of the symlink's containing
-# directory).
-if (
-   set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null`
-   if test "$*" = "X"; then
-      # -L didn't work.
-      set X `ls -t $srcdir/configure conftest.file`
-   fi
-   rm -f conftest.file
-   if test "$*" != "X $srcdir/configure conftest.file" \
-      && test "$*" != "X conftest.file $srcdir/configure"; then
-
-      # If neither matched, then we have a broken ls.  This can happen
-      # if, for instance, CONFIG_SHELL is bash and it inherits a
-      # broken ls alias from the environment.  This has actually
-      # happened.  Such a system could not be considered "sane".
-      { { echo "$as_me:$LINENO: error: ls -t appears to fail.  Make sure there is not a broken
-alias in your environment" >&5
-echo "$as_me: error: ls -t appears to fail.  Make sure there is not a broken
-alias in your environment" >&2;}
-   { (exit 1); exit 1; }; }
-   fi
-
-   test "$2" = conftest.file
-   )
-then
-   # Ok.
-   :
-else
-   { { echo "$as_me:$LINENO: error: newly created file is older than distributed files!
-Check your system clock" >&5
-echo "$as_me: error: newly created file is older than distributed files!
-Check your system clock" >&2;}
-   { (exit 1); exit 1; }; }
-fi
-echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-test "$program_prefix" != NONE &&
-  program_transform_name="s,^,$program_prefix,;$program_transform_name"
-# Use a double $ so make ignores it.
-test "$program_suffix" != NONE &&
-  program_transform_name="s,\$,$program_suffix,;$program_transform_name"
-# Double any \ or $.  echo might interpret backslashes.
-# By default was `s,x,x', remove it if useless.
-cat <<\_ACEOF >conftest.sed
-s/[\\$]/&&/g;s/;s,x,x,$//
-_ACEOF
-program_transform_name=`echo $program_transform_name | sed -f conftest.sed`
-rm conftest.sed
-
-# expand $ac_aux_dir to an absolute path
-am_aux_dir=`cd $ac_aux_dir && pwd`
-
-test x"${MISSING+set}" = xset || MISSING="\${SHELL} $am_aux_dir/missing"
-# Use eval to expand $SHELL
-if eval "$MISSING --run true"; then
-  am_missing_run="$MISSING --run "
-else
-  am_missing_run=
-  { echo "$as_me:$LINENO: WARNING: \`missing' script is too old or missing" >&5
-echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;}
-fi
-
-if mkdir -p --version . >/dev/null 2>&1 && test ! -d ./--version; then
-  # We used to keeping the `.' as first argument, in order to
-  # allow $(mkdir_p) to be used without argument.  As in
-  #   $(mkdir_p) $(somedir)
-  # where $(somedir) is conditionally defined.  However this is wrong
-  # for two reasons:
-  #  1. if the package is installed by a user who cannot write `.'
-  #     make install will fail,
-  #  2. the above comment should most certainly read
-  #     $(mkdir_p) $(DESTDIR)$(somedir)
-  #     so it does not work when $(somedir) is undefined and
-  #     $(DESTDIR) is not.
-  #  To support the latter case, we have to write
-  #     test -z "$(somedir)" || $(mkdir_p) $(DESTDIR)$(somedir),
-  #  so the `.' trick is pointless.
-  mkdir_p='mkdir -p --'
-else
-  # On NextStep and OpenStep, the `mkdir' command does not
-  # recognize any option.  It will interpret all options as
-  # directories to create, and then abort because `.' already
-  # exists.
-  for d in ./-p ./--version;
-  do
-    test -d $d && rmdir $d
-  done
-  # $(mkinstalldirs) is defined by Automake if mkinstalldirs exists.
-  if test -f "$ac_aux_dir/mkinstalldirs"; then
-    mkdir_p='$(mkinstalldirs)'
-  else
-    mkdir_p='$(install_sh) -d'
-  fi
-fi
-
-for ac_prog in gawk mawk nawk awk
-do
-  # Extract the first word of "$ac_prog", so it can be a program name with args.
-set dummy $ac_prog; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-if test "${ac_cv_prog_AWK+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  if test -n "$AWK"; then
-  ac_cv_prog_AWK="$AWK" # Let the user override the test.
-else
-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  for ac_exec_ext in '' $ac_executable_extensions; do
-  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-    ac_cv_prog_AWK="$ac_prog"
-    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-    break 2
-  fi
-done
-done
-
-fi
-fi
-AWK=$ac_cv_prog_AWK
-if test -n "$AWK"; then
-  echo "$as_me:$LINENO: result: $AWK" >&5
-echo "${ECHO_T}$AWK" >&6
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-fi
-
-  test -n "$AWK" && break
-done
-
-echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
-echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6
-set dummy ${MAKE-make}; ac_make=`echo "$2" | sed 'y,:./+-,___p_,'`
-if eval "test \"\${ac_cv_prog_make_${ac_make}_set+set}\" = set"; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.make <<\_ACEOF
-all:
-	@echo 'ac_maketemp="$(MAKE)"'
-_ACEOF
-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
-eval `${MAKE-make} -f conftest.make 2>/dev/null | grep temp=`
-if test -n "$ac_maketemp"; then
-  eval ac_cv_prog_make_${ac_make}_set=yes
-else
-  eval ac_cv_prog_make_${ac_make}_set=no
-fi
-rm -f conftest.make
-fi
-if eval "test \"`echo '$ac_cv_prog_make_'${ac_make}_set`\" = yes"; then
-  echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-  SET_MAKE=
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-  SET_MAKE="MAKE=${MAKE-make}"
-fi
-
-rm -rf .tst 2>/dev/null
-mkdir .tst 2>/dev/null
-if test -d .tst; then
-  am__leading_dot=.
-else
-  am__leading_dot=_
-fi
-rmdir .tst 2>/dev/null
-
-# test to see if srcdir already configured
-if test "`cd $srcdir && pwd`" != "`pwd`" &&
-   test -f $srcdir/config.status; then
-  { { echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
-echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;}
-   { (exit 1); exit 1; }; }
-fi
-
-# test whether we have cygpath
-if test -z "$CYGPATH_W"; then
-  if (cygpath --version) >/dev/null 2>/dev/null; then
-    CYGPATH_W='cygpath -w'
-  else
-    CYGPATH_W=echo
-  fi
-fi
-
-
-# Define the identity of the package.
- PACKAGE='cufflinks'
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-if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
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-else
-  if test -n "$ac_ct_CC"; then
-  ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
-else
-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  for ac_exec_ext in '' $ac_executable_extensions; do
-  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-    ac_cv_prog_ac_ct_CC="$ac_prog"
-    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-    break 2
-  fi
-done
-done
-
-fi
-fi
-ac_ct_CC=$ac_cv_prog_ac_ct_CC
-if test -n "$ac_ct_CC"; then
-  echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
-echo "${ECHO_T}$ac_ct_CC" >&6
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-fi
-
-  test -n "$ac_ct_CC" && break
-done
-
-  CC=$ac_ct_CC
-fi
-
-fi
-
-
-test -z "$CC" && { { echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH
-See \`config.log' for more details." >&5
-echo "$as_me: error: no acceptable C compiler found in \$PATH
-See \`config.log' for more details." >&2;}
-   { (exit 1); exit 1; }; }
-
-# Provide some information about the compiler.
-echo "$as_me:$LINENO:" \
-     "checking for C compiler version" >&5
-ac_compiler=`set X $ac_compile; echo $2`
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
-  (eval $ac_compiler --version </dev/null >&5) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -v </dev/null >&5\"") >&5
-  (eval $ac_compiler -v </dev/null >&5) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -V </dev/null >&5\"") >&5
-  (eval $ac_compiler -V </dev/null >&5) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }
-
-echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
-echo $ECHO_N "checking whether we are using the GNU C compiler... $ECHO_C" >&6
-if test "${ac_cv_c_compiler_gnu+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-int
-main ()
-{
-#ifndef __GNUC__
-       choke me
-#endif
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_compiler_gnu=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_compiler_gnu=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-ac_cv_c_compiler_gnu=$ac_compiler_gnu
-
-fi
-echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6
-GCC=`test $ac_compiler_gnu = yes && echo yes`
-ac_test_CFLAGS=${CFLAGS+set}
-ac_save_CFLAGS=$CFLAGS
-CFLAGS="-g"
-echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
-echo $ECHO_N "checking whether $CC accepts -g... $ECHO_C" >&6
-if test "${ac_cv_prog_cc_g+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-int
-main ()
-{
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_prog_cc_g=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_prog_cc_g=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
-echo "${ECHO_T}$ac_cv_prog_cc_g" >&6
-if test "$ac_test_CFLAGS" = set; then
-  CFLAGS=$ac_save_CFLAGS
-elif test $ac_cv_prog_cc_g = yes; then
-  if test "$GCC" = yes; then
-    CFLAGS="-g -O2"
-  else
-    CFLAGS="-g"
-  fi
-else
-  if test "$GCC" = yes; then
-    CFLAGS="-O2"
-  else
-    CFLAGS=
-  fi
-fi
-echo "$as_me:$LINENO: checking for $CC option to accept ANSI C" >&5
-echo $ECHO_N "checking for $CC option to accept ANSI C... $ECHO_C" >&6
-if test "${ac_cv_prog_cc_stdc+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_cv_prog_cc_stdc=no
-ac_save_CC=$CC
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <stdarg.h>
-#include <stdio.h>
-#include <sys/types.h>
-#include <sys/stat.h>
-/* Most of the following tests are stolen from RCS 5.7's src/conf.sh.  */
-struct buf { int x; };
-FILE * (*rcsopen) (struct buf *, struct stat *, int);
-static char *e (p, i)
-     char **p;
-     int i;
-{
-  return p[i];
-}
-static char *f (char * (*g) (char **, int), char **p, ...)
-{
-  char *s;
-  va_list v;
-  va_start (v,p);
-  s = g (p, va_arg (v,int));
-  va_end (v);
-  return s;
-}
-
-/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default.  It has
-   function prototypes and stuff, but not '\xHH' hex character constants.
-   These don't provoke an error unfortunately, instead are silently treated
-   as 'x'.  The following induces an error, until -std1 is added to get
-   proper ANSI mode.  Curiously '\x00'!='x' always comes out true, for an
-   array size at least.  It's necessary to write '\x00'==0 to get something
-   that's true only with -std1.  */
-int osf4_cc_array ['\x00' == 0 ? 1 : -1];
-
-int test (int i, double x);
-struct s1 {int (*f) (int a);};
-struct s2 {int (*f) (double a);};
-int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int);
-int argc;
-char **argv;
-int
-main ()
-{
-return f (e, argv, 0) != argv[0]  ||  f (e, argv, 1) != argv[1];
-  ;
-  return 0;
-}
-_ACEOF
-# Don't try gcc -ansi; that turns off useful extensions and
-# breaks some systems' header files.
-# AIX			-qlanglvl=ansi
-# Ultrix and OSF/1	-std1
-# HP-UX 10.20 and later	-Ae
-# HP-UX older versions	-Aa -D_HPUX_SOURCE
-# SVR4			-Xc -D__EXTENSIONS__
-for ac_arg in "" -qlanglvl=ansi -std1 -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
-do
-  CC="$ac_save_CC $ac_arg"
-  rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_prog_cc_stdc=$ac_arg
-break
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-fi
-rm -f conftest.err conftest.$ac_objext
-done
-rm -f conftest.$ac_ext conftest.$ac_objext
-CC=$ac_save_CC
-
-fi
-
-case "x$ac_cv_prog_cc_stdc" in
-  x|xno)
-    echo "$as_me:$LINENO: result: none needed" >&5
-echo "${ECHO_T}none needed" >&6 ;;
-  *)
-    echo "$as_me:$LINENO: result: $ac_cv_prog_cc_stdc" >&5
-echo "${ECHO_T}$ac_cv_prog_cc_stdc" >&6
-    CC="$CC $ac_cv_prog_cc_stdc" ;;
-esac
-
-# Some people use a C++ compiler to compile C.  Since we use `exit',
-# in C++ we need to declare it.  In case someone uses the same compiler
-# for both compiling C and C++ we need to have the C++ compiler decide
-# the declaration of exit, since it's the most demanding environment.
-cat >conftest.$ac_ext <<_ACEOF
-#ifndef __cplusplus
-  choke me
-#endif
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  for ac_declaration in \
-   '' \
-   'extern "C" void std::exit (int) throw (); using std::exit;' \
-   'extern "C" void std::exit (int); using std::exit;' \
-   'extern "C" void exit (int) throw ();' \
-   'extern "C" void exit (int);' \
-   'void exit (int);'
-do
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_declaration
-#include <stdlib.h>
-int
-main ()
-{
-exit (42);
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  :
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-continue
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_declaration
-int
-main ()
-{
-exit (42);
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  break
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-done
-rm -f conftest*
-if test -n "$ac_declaration"; then
-  echo '#ifdef __cplusplus' >>confdefs.h
-  echo $ac_declaration      >>confdefs.h
-  echo '#endif'             >>confdefs.h
-fi
-
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-depcc="$CC"   am_compiler_list=
-
-echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
-echo $ECHO_N "checking dependency style of $depcc... $ECHO_C" >&6
-if test "${am_cv_CC_dependencies_compiler_type+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
-  # We make a subdir and do the tests there.  Otherwise we can end up
-  # making bogus files that we don't know about and never remove.  For
-  # instance it was reported that on HP-UX the gcc test will end up
-  # making a dummy file named `D' -- because `-MD' means `put the output
-  # in D'.
-  mkdir conftest.dir
-  # Copy depcomp to subdir because otherwise we won't find it if we're
-  # using a relative directory.
-  cp "$am_depcomp" conftest.dir
-  cd conftest.dir
-  # We will build objects and dependencies in a subdirectory because
-  # it helps to detect inapplicable dependency modes.  For instance
-  # both Tru64's cc and ICC support -MD to output dependencies as a
-  # side effect of compilation, but ICC will put the dependencies in
-  # the current directory while Tru64 will put them in the object
-  # directory.
-  mkdir sub
-
-  am_cv_CC_dependencies_compiler_type=none
-  if test "$am_compiler_list" = ""; then
-     am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
-  fi
-  for depmode in $am_compiler_list; do
-    # Setup a source with many dependencies, because some compilers
-    # like to wrap large dependency lists on column 80 (with \), and
-    # we should not choose a depcomp mode which is confused by this.
-    #
-    # We need to recreate these files for each test, as the compiler may
-    # overwrite some of them when testing with obscure command lines.
-    # This happens at least with the AIX C compiler.
-    : > sub/conftest.c
-    for i in 1 2 3 4 5 6; do
-      echo '#include "conftst'$i'.h"' >> sub/conftest.c
-      # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with
-      # Solaris 8's {/usr,}/bin/sh.
-      touch sub/conftst$i.h
-    done
-    echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
-
-    case $depmode in
-    nosideeffect)
-      # after this tag, mechanisms are not by side-effect, so they'll
-      # only be used when explicitly requested
-      if test "x$enable_dependency_tracking" = xyes; then
-	continue
-      else
-	break
-      fi
-      ;;
-    none) break ;;
-    esac
-    # We check with `-c' and `-o' for the sake of the "dashmstdout"
-    # mode.  It turns out that the SunPro C++ compiler does not properly
-    # handle `-M -o', and we need to detect this.
-    if depmode=$depmode \
-       source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \
-       depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
-       $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \
-         >/dev/null 2>conftest.err &&
-       grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
-       grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 &&
-       ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
-      # icc doesn't choke on unknown options, it will just issue warnings
-      # or remarks (even with -Werror).  So we grep stderr for any message
-      # that says an option was ignored or not supported.
-      # When given -MP, icc 7.0 and 7.1 complain thusly:
-      #   icc: Command line warning: ignoring option '-M'; no argument required
-      # The diagnosis changed in icc 8.0:
-      #   icc: Command line remark: option '-MP' not supported
-      if (grep 'ignoring option' conftest.err ||
-          grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else
-        am_cv_CC_dependencies_compiler_type=$depmode
-        break
-      fi
-    fi
-  done
-
-  cd ..
-  rm -rf conftest.dir
-else
-  am_cv_CC_dependencies_compiler_type=none
-fi
-
-fi
-echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5
-echo "${ECHO_T}$am_cv_CC_dependencies_compiler_type" >&6
-CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type
-
-
-
-if
-  test "x$enable_dependency_tracking" != xno \
-  && test "$am_cv_CC_dependencies_compiler_type" = gcc3; then
-  am__fastdepCC_TRUE=
-  am__fastdepCC_FALSE='#'
-else
-  am__fastdepCC_TRUE='#'
-  am__fastdepCC_FALSE=
-fi
-
-
-echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
-echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6
-set dummy ${MAKE-make}; ac_make=`echo "$2" | sed 'y,:./+-,___p_,'`
-if eval "test \"\${ac_cv_prog_make_${ac_make}_set+set}\" = set"; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.make <<\_ACEOF
-all:
-	@echo 'ac_maketemp="$(MAKE)"'
-_ACEOF
-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
-eval `${MAKE-make} -f conftest.make 2>/dev/null | grep temp=`
-if test -n "$ac_maketemp"; then
-  eval ac_cv_prog_make_${ac_make}_set=yes
-else
-  eval ac_cv_prog_make_${ac_make}_set=no
-fi
-rm -f conftest.make
-fi
-if eval "test \"`echo '$ac_cv_prog_make_'${ac_make}_set`\" = yes"; then
-  echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-  SET_MAKE=
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-  SET_MAKE="MAKE=${MAKE-make}"
-fi
-
-if test -n "$ac_tool_prefix"; then
-  # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
-set dummy ${ac_tool_prefix}ranlib; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-if test "${ac_cv_prog_RANLIB+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  if test -n "$RANLIB"; then
-  ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test.
-else
-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  for ac_exec_ext in '' $ac_executable_extensions; do
-  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-    ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
-    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-    break 2
-  fi
-done
-done
-
-fi
-fi
-RANLIB=$ac_cv_prog_RANLIB
-if test -n "$RANLIB"; then
-  echo "$as_me:$LINENO: result: $RANLIB" >&5
-echo "${ECHO_T}$RANLIB" >&6
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-fi
-
-fi
-if test -z "$ac_cv_prog_RANLIB"; then
-  ac_ct_RANLIB=$RANLIB
-  # Extract the first word of "ranlib", so it can be a program name with args.
-set dummy ranlib; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  if test -n "$ac_ct_RANLIB"; then
-  ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test.
-else
-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  for ac_exec_ext in '' $ac_executable_extensions; do
-  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-    ac_cv_prog_ac_ct_RANLIB="ranlib"
-    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-    break 2
-  fi
-done
-done
-
-  test -z "$ac_cv_prog_ac_ct_RANLIB" && ac_cv_prog_ac_ct_RANLIB=":"
-fi
-fi
-ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
-if test -n "$ac_ct_RANLIB"; then
-  echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
-echo "${ECHO_T}$ac_ct_RANLIB" >&6
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-fi
-
-  RANLIB=$ac_ct_RANLIB
-else
-  RANLIB="$ac_cv_prog_RANLIB"
-fi
-
-# Find a good install program.  We prefer a C program (faster),
-# so one script is as good as another.  But avoid the broken or
-# incompatible versions:
-# SysV /etc/install, /usr/sbin/install
-# SunOS /usr/etc/install
-# IRIX /sbin/install
-# AIX /bin/install
-# AmigaOS /C/install, which installs bootblocks on floppy discs
-# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag
-# AFS /usr/afsws/bin/install, which mishandles nonexistent args
-# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
-# OS/2's system install, which has a completely different semantic
-# ./install, which can be erroneously created by make from ./install.sh.
-echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
-echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6
-if test -z "$INSTALL"; then
-if test "${ac_cv_path_install+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  # Account for people who put trailing slashes in PATH elements.
-case $as_dir/ in
-  ./ | .// | /cC/* | \
-  /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \
-  ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \
-  /usr/ucb/* ) ;;
-  *)
-    # OSF1 and SCO ODT 3.0 have their own names for install.
-    # Don't use installbsd from OSF since it installs stuff as root
-    # by default.
-    for ac_prog in ginstall scoinst install; do
-      for ac_exec_ext in '' $ac_executable_extensions; do
-	if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
-	  if test $ac_prog = install &&
-	    grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
-	    # AIX install.  It has an incompatible calling convention.
-	    :
-	  elif test $ac_prog = install &&
-	    grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
-	    # program-specific install script used by HP pwplus--don't use.
-	    :
-	  else
-	    ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
-	    break 3
-	  fi
-	fi
-      done
-    done
-    ;;
-esac
-done
-
-
-fi
-  if test "${ac_cv_path_install+set}" = set; then
-    INSTALL=$ac_cv_path_install
-  else
-    # As a last resort, use the slow shell script.  We don't cache a
-    # path for INSTALL within a source directory, because that will
-    # break other packages using the cache if that directory is
-    # removed, or if the path is relative.
-    INSTALL=$ac_install_sh
-  fi
-fi
-echo "$as_me:$LINENO: result: $INSTALL" >&5
-echo "${ECHO_T}$INSTALL" >&6
-
-# Use test -z because SunOS4 sh mishandles braces in ${var-val}.
-# It thinks the first close brace ends the variable substitution.
-test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'
-
-test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}'
-
-test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
-
-
-
-
-
-        if test -n "$PYTHON"; then
-      # If the user set $PYTHON, use it and don't search something else.
-      echo "$as_me:$LINENO: checking whether $PYTHON version >= 2.4" >&5
-echo $ECHO_N "checking whether $PYTHON version >= 2.4... $ECHO_C" >&6
-      prog="import sys, string
-# split strings by '.' and convert to numeric.  Append some zeros
-# because we need at least 4 digits for the hex conversion.
-minver = map(int, string.split('2.4', '.')) + [0, 0, 0]
-minverhex = 0
-for i in xrange(0, 4): minverhex = (minverhex << 8) + minver[i]
-sys.exit(sys.hexversion < minverhex)"
-  if { echo "$as_me:$LINENO: $PYTHON -c "$prog"" >&5
-   ($PYTHON -c "$prog") >&5 2>&5
-   ac_status=$?
-   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-   (exit $ac_status); }; then
-  echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-else
-  { { echo "$as_me:$LINENO: error: too old" >&5
-echo "$as_me: error: too old" >&2;}
-   { (exit 1); exit 1; }; }
-fi
-
-      am_display_PYTHON=$PYTHON
-    else
-      # Otherwise, try each interpreter until we find one that satisfies
-      # VERSION.
-      echo "$as_me:$LINENO: checking for a Python interpreter with version >= 2.4" >&5
-echo $ECHO_N "checking for a Python interpreter with version >= 2.4... $ECHO_C" >&6
-if test "${am_cv_pathless_PYTHON+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-
-	for am_cv_pathless_PYTHON in python python2 python2.5 python2.4 python2.3 python2.2 python2.1 python2.0 python1.6 python1.5 none; do
-	  test "$am_cv_pathless_PYTHON" = none && break
-	  prog="import sys, string
-# split strings by '.' and convert to numeric.  Append some zeros
-# because we need at least 4 digits for the hex conversion.
-minver = map(int, string.split('2.4', '.')) + [0, 0, 0]
-minverhex = 0
-for i in xrange(0, 4): minverhex = (minverhex << 8) + minver[i]
-sys.exit(sys.hexversion < minverhex)"
-  if { echo "$as_me:$LINENO: $am_cv_pathless_PYTHON -c "$prog"" >&5
-   ($am_cv_pathless_PYTHON -c "$prog") >&5 2>&5
-   ac_status=$?
-   echo "$as_me:$LINENO: \$? = $ac_status" >&5
-   (exit $ac_status); }; then
-  break
-fi
-
-	done
-fi
-echo "$as_me:$LINENO: result: $am_cv_pathless_PYTHON" >&5
-echo "${ECHO_T}$am_cv_pathless_PYTHON" >&6
-      # Set $PYTHON to the absolute path of $am_cv_pathless_PYTHON.
-      if test "$am_cv_pathless_PYTHON" = none; then
-	PYTHON=:
-      else
-        # Extract the first word of "$am_cv_pathless_PYTHON", so it can be a program name with args.
-set dummy $am_cv_pathless_PYTHON; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-if test "${ac_cv_path_PYTHON+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  case $PYTHON in
-  [\\/]* | ?:[\\/]*)
-  ac_cv_path_PYTHON="$PYTHON" # Let the user override the test with a path.
-  ;;
-  *)
-  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-  for ac_exec_ext in '' $ac_executable_extensions; do
-  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-    ac_cv_path_PYTHON="$as_dir/$ac_word$ac_exec_ext"
-    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-    break 2
-  fi
-done
-done
-
-  ;;
-esac
-fi
-PYTHON=$ac_cv_path_PYTHON
-
-if test -n "$PYTHON"; then
-  echo "$as_me:$LINENO: result: $PYTHON" >&5
-echo "${ECHO_T}$PYTHON" >&6
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-fi
-
-      fi
-      am_display_PYTHON=$am_cv_pathless_PYTHON
-    fi
-
-
-  if test "$PYTHON" = :; then
-      { { echo "$as_me:$LINENO: error: no suitable Python interpreter found" >&5
-echo "$as_me: error: no suitable Python interpreter found" >&2;}
-   { (exit 1); exit 1; }; }
-  else
-
-
-  echo "$as_me:$LINENO: checking for $am_display_PYTHON version" >&5
-echo $ECHO_N "checking for $am_display_PYTHON version... $ECHO_C" >&6
-if test "${am_cv_python_version+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  am_cv_python_version=`$PYTHON -c "import sys; print sys.version[:3]"`
-fi
-echo "$as_me:$LINENO: result: $am_cv_python_version" >&5
-echo "${ECHO_T}$am_cv_python_version" >&6
-  PYTHON_VERSION=$am_cv_python_version
-
-
-
-  PYTHON_PREFIX='${prefix}'
-
-  PYTHON_EXEC_PREFIX='${exec_prefix}'
-
-
-
-  echo "$as_me:$LINENO: checking for $am_display_PYTHON platform" >&5
-echo $ECHO_N "checking for $am_display_PYTHON platform... $ECHO_C" >&6
-if test "${am_cv_python_platform+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  am_cv_python_platform=`$PYTHON -c "import sys; print sys.platform"`
-fi
-echo "$as_me:$LINENO: result: $am_cv_python_platform" >&5
-echo "${ECHO_T}$am_cv_python_platform" >&6
-  PYTHON_PLATFORM=$am_cv_python_platform
-
-
-
-
-                echo "$as_me:$LINENO: checking for $am_display_PYTHON script directory" >&5
-echo $ECHO_N "checking for $am_display_PYTHON script directory... $ECHO_C" >&6
-if test "${am_cv_python_pythondir+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  am_cv_python_pythondir=`$PYTHON -c "from distutils import sysconfig; print sysconfig.get_python_lib(0,0,prefix='$PYTHON_PREFIX')" 2>/dev/null ||
-     echo "$PYTHON_PREFIX/lib/python$PYTHON_VERSION/site-packages"`
-fi
-echo "$as_me:$LINENO: result: $am_cv_python_pythondir" >&5
-echo "${ECHO_T}$am_cv_python_pythondir" >&6
-  pythondir=$am_cv_python_pythondir
-
-
-
-  pkgpythondir=\${pythondir}/$PACKAGE
-
-
-            echo "$as_me:$LINENO: checking for $am_display_PYTHON extension module directory" >&5
-echo $ECHO_N "checking for $am_display_PYTHON extension module directory... $ECHO_C" >&6
-if test "${am_cv_python_pyexecdir+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  am_cv_python_pyexecdir=`$PYTHON -c "from distutils import sysconfig; print sysconfig.get_python_lib(1,0,prefix='$PYTHON_EXEC_PREFIX')" 2>/dev/null ||
-     echo "${PYTHON_EXEC_PREFIX}/lib/python${PYTHON_VERSION}/site-packages"`
-fi
-echo "$as_me:$LINENO: result: $am_cv_python_pyexecdir" >&5
-echo "${ECHO_T}$am_cv_python_pyexecdir" >&6
-  pyexecdir=$am_cv_python_pyexecdir
-
-
-
-  pkgpyexecdir=\${pyexecdir}/$PACKAGE
-
-
-
-  fi
-
-
-
-
-
-# Check whether --with-boost or --without-boost was given.
-if test "${with_boost+set}" = set; then
-  withval="$with_boost"
-
-    if test "$withval" = "no"; then
-		want_boost="no"
-    elif test "$withval" = "yes"; then
-        want_boost="yes"
-        ac_boost_path=""
-    else
-	    want_boost="yes"
-        ac_boost_path="$withval"
-	fi
-
-else
-  want_boost="yes"
-fi;
-
-
-
-# Check whether --with-boost-libdir or --without-boost-libdir was given.
-if test "${with_boost_libdir+set}" = set; then
-  withval="$with_boost_libdir"
-
-        if test -d $withval
-        then
-                ac_boost_lib_path="$withval"
-        else
-                { { echo "$as_me:$LINENO: error: --with-boost-libdir expected directory name" >&5
-echo "$as_me: error: --with-boost-libdir expected directory name" >&2;}
-   { (exit 1); exit 1; }; }
-        fi
-
-else
-  ac_boost_lib_path=""
-
-fi;
-
-if test "x$want_boost" = "xyes"; then
-	boost_lib_version_req=1.38.0
-	boost_lib_version_req_shorten=`expr $boost_lib_version_req : '\([0-9]*\.[0-9]*\)'`
-	boost_lib_version_req_major=`expr $boost_lib_version_req : '\([0-9]*\)'`
-	boost_lib_version_req_minor=`expr $boost_lib_version_req : '[0-9]*\.\([0-9]*\)'`
-	boost_lib_version_req_sub_minor=`expr $boost_lib_version_req : '[0-9]*\.[0-9]*\.\([0-9]*\)'`
-	if test "x$boost_lib_version_req_sub_minor" = "x" ; then
-		boost_lib_version_req_sub_minor="0"
-    	fi
-	WANT_BOOST_VERSION=`expr $boost_lib_version_req_major \* 100000 \+  $boost_lib_version_req_minor \* 100 \+ $boost_lib_version_req_sub_minor`
-	echo "$as_me:$LINENO: checking for boostlib >= $boost_lib_version_req" >&5
-echo $ECHO_N "checking for boostlib >= $boost_lib_version_req... $ECHO_C" >&6
-	succeeded=no
-
-				if test "$ac_boost_path" != ""; then
-		BOOST_LDFLAGS="-L$ac_boost_path/lib"
-		BOOST_CPPFLAGS="-I$ac_boost_path/include"
-	else
-		for ac_boost_path_tmp in /usr /usr/local /opt /opt/local ; do
-			if test -d "$ac_boost_path_tmp/include/boost" && test -r "$ac_boost_path_tmp/include/boost"; then
-				BOOST_LDFLAGS="-L$ac_boost_path_tmp/lib"
-				BOOST_CPPFLAGS="-I$ac_boost_path_tmp/include"
-				break;
-			fi
-		done
-	fi
-
-            if test "$ac_boost_lib_path" != ""; then
-       BOOST_LDFLAGS="-L$ac_boost_lib_path"
-    fi
-
-	CPPFLAGS_SAVED="$CPPFLAGS"
-	CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
-	export CPPFLAGS
-
-	LDFLAGS_SAVED="$LDFLAGS"
-	LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
-	export LDFLAGS
-
-	ac_ext=cc
-ac_cpp='$CXXCPP $CPPFLAGS'
-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-     	cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-	#include <boost/version.hpp>
-
-int
-main ()
-{
-
-	#if BOOST_VERSION >= $WANT_BOOST_VERSION
-	// Everything is okay
-	#else
-	#  error Boost version is too old
-	#endif
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-
-        echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-	succeeded=yes
-	found_system=yes
-
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-	ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-
-
-			if test "x$succeeded" != "xyes"; then
-		_version=0
-		if test "$ac_boost_path" != ""; then
-			if test -d "$ac_boost_path" && test -r "$ac_boost_path"; then
-				for i in `ls -d $ac_boost_path/include/boost-* 2>/dev/null`; do
-					_version_tmp=`echo $i | sed "s#$ac_boost_path##" | sed 's/\/include\/boost-//' | sed 's/_/./'`
-					V_CHECK=`expr $_version_tmp \> $_version`
-					if test "$V_CHECK" = "1" ; then
-						_version=$_version_tmp
-					fi
-					VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
-					BOOST_CPPFLAGS="-I$ac_boost_path/include/boost-$VERSION_UNDERSCORE"
-				done
-			fi
-		else
-			for ac_boost_path in /usr /usr/local /opt /opt/local ; do
-				if test -d "$ac_boost_path" && test -r "$ac_boost_path"; then
-					for i in `ls -d $ac_boost_path/include/boost-* 2>/dev/null`; do
-						_version_tmp=`echo $i | sed "s#$ac_boost_path##" | sed 's/\/include\/boost-//' | sed 's/_/./'`
-						V_CHECK=`expr $_version_tmp \> $_version`
-						if test "$V_CHECK" = "1" ; then
-							_version=$_version_tmp
-	               					best_path=$ac_boost_path
-						fi
-					done
-				fi
-			done
-
-			VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
-			BOOST_CPPFLAGS="-I$best_path/include/boost-$VERSION_UNDERSCORE"
-            if test "$ac_boost_lib_path" = ""
-            then
-               BOOST_LDFLAGS="-L$best_path/lib"
-            fi
-
-	    		if test "x$BOOST_ROOT" != "x"; then
-				if test -d "$BOOST_ROOT" && test -r "$BOOST_ROOT" && test -d "$BOOST_ROOT/stage/lib" && test -r "$BOOST_ROOT/stage/lib"; then
-					version_dir=`expr //$BOOST_ROOT : '.*/\(.*\)'`
-					stage_version=`echo $version_dir | sed 's/boost_//' | sed 's/_/./g'`
-			        	stage_version_shorten=`expr $stage_version : '\([0-9]*\.[0-9]*\)'`
-					V_CHECK=`expr $stage_version_shorten \>\= $_version`
-                    if test "$V_CHECK" = "1" -a "$ac_boost_lib_path" = "" ; then
-						{ echo "$as_me:$LINENO: We will use a staged boost library from $BOOST_ROOT" >&5
-echo "$as_me: We will use a staged boost library from $BOOST_ROOT" >&6;}
-						BOOST_CPPFLAGS="-I$BOOST_ROOT"
-						BOOST_LDFLAGS="-L$BOOST_ROOT/stage/lib"
-					fi
-				fi
-	    		fi
-		fi
-
-		CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
-		export CPPFLAGS
-		LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
-		export LDFLAGS
-
-		ac_ext=cc
-ac_cpp='$CXXCPP $CPPFLAGS'
-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-	     	cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-		#include <boost/version.hpp>
-
-int
-main ()
-{
-
-		#if BOOST_VERSION >= $WANT_BOOST_VERSION
-		// Everything is okay
-		#else
-		#  error Boost version is too old
-		#endif
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-
-        	echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-		succeeded=yes
-		found_system=yes
-
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-		ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-	fi
-
-	if test "$succeeded" != "yes" ; then
-		if test "$_version" = "0" ; then
-			{ { echo "$as_me:$LINENO: error: We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option.  If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation." >&5
-echo "$as_me: error: We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option.  If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation." >&2;}
-   { (exit 1); exit 1; }; }
-		else
-			{ echo "$as_me:$LINENO: Your boost libraries seems to old (version $_version)." >&5
-echo "$as_me: Your boost libraries seems to old (version $_version)." >&6;}
-		fi
-	else
-
-
-
-cat >>confdefs.h <<\_ACEOF
-#define HAVE_BOOST
-_ACEOF
-
-	fi
-
-        CPPFLAGS="$CPPFLAGS_SAVED"
-       	LDFLAGS="$LDFLAGS_SAVED"
-fi
-
-
-
-
-# Check whether --with-bam or --without-bam was given.
-if test "${with_bam+set}" = set; then
-  withval="$with_bam"
-
-    if test "$withval" = "no"; then
-		want_bam="no"
-    elif test "$withval" = "yes"; then
-        want_bam="yes"
-        ac_bam_path=""
-    else
-	    want_bam="yes"
-        ac_bam_path="$withval"
-	fi
-
-else
-  want_bam="yes"
-fi;
-
-
-
-# Check whether --with-bam-libdir or --without-bam-libdir was given.
-if test "${with_bam_libdir+set}" = set; then
-  withval="$with_bam_libdir"
-
-        if test -d $withval
-        then
-                ac_bam_lib_path="$withval"
-        else
-                { { echo "$as_me:$LINENO: error: --with-bam-libdir expected directory name" >&5
-echo "$as_me: error: --with-bam-libdir expected directory name" >&2;}
-   { (exit 1); exit 1; }; }
-        fi
-
-else
-  ac_bam_lib_path=""
-
-fi;
-
-if test "x$want_bam" = "xyes"; then
-#	bam_lib_version_req=ifelse([], ,1.20.0,)
-#	bam_lib_version_req_shorten=`expr $bam_lib_version_req : '\([[0-9]]*\.[[0-9]]*\)'`
-#	bam_lib_version_req_major=`expr $bam_lib_version_req : '\([[0-9]]*\)'`
-#	bam_lib_version_req_minor=`expr $bam_lib_version_req : '[[0-9]]*\.\([[0-9]]*\)'`
-#	bam_lib_version_req_sub_minor=`expr $bam_lib_version_req : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
-#	if test "x$bam_lib_version_req_sub_minor" = "x" ; then
-#		bam_lib_version_req_sub_minor="0"
-#    	fi
-#	WANT_BAM_VERSION=`expr $bam_lib_version_req_major \* 100000 \+  $bam_lib_version_req_minor \* 100 \+ $bam_lib_version_req_sub_minor`
-	echo "$as_me:$LINENO: checking for bamlib" >&5
-echo $ECHO_N "checking for bamlib... $ECHO_C" >&6
-	succeeded=no
-
-		if test "$ac_bam_path" != ""; then
-		BAM_LDFLAGS="-L$ac_bam_path/lib"
-		BAM_CPPFLAGS="-I$ac_bam_path/include"
-	else
-		for ac_bam_path_tmp in /usr /usr/local /opt /opt/local ; do
-			if test -d "$ac_bam_path_tmp/include/bam" && test -r "$ac_bam_path_tmp/include/bam"; then
-				BAM_LDFLAGS="-L$ac_bam_path_tmp/lib"
-				BAM_CPPFLAGS="-I$ac_bam_path_tmp/include"
-				break;
-			fi
-		done
-	fi
-
-            if test "$ac_bam_lib_path" != ""; then
-       BAM_LDFLAGS="-L$ac_bam_lib_path"
-    fi
-
-	CPPFLAGS_SAVED="$CPPFLAGS"
-	CPPFLAGS="$CPPFLAGS $BAM_CPPFLAGS"
-	export CPPFLAGS
-
-	LDFLAGS_SAVED="$LDFLAGS"
-	LDFLAGS="$LDFLAGS $BAM_LDFLAGS"
-	export LDFLAGS
-
-	ac_ext=cc
-ac_cpp='$CXXCPP $CPPFLAGS'
-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-     	cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-<<<<<<< HEAD
-	#include <bam/bam.h>
-=======
-	#include <samtools/bam.h>
->>>>>>> fedd24b9bf5c659622fa3386243a60f6197a83ac
-
-int
-main ()
-{
-
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-
-        echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-	succeeded=yes
-	found_system=yes
-
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-	ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-			if test "x$succeeded" != "xyes"; then
-		_version=0
-		if test "$ac_bam_path" != ""; then
-			if test -d "$ac_bam_path" && test -r "$ac_bam_path"; then
-				for i in `ls -d $ac_bam_path/include/bam-* 2>/dev/null`; do
-					_version_tmp=`echo $i | sed "s#$ac_bam_path##" | sed 's/\/include\/bam-//' | sed 's/_/./'`
-					V_CHECK=`expr $_version_tmp \> $_version`
-					if test "$V_CHECK" = "1" ; then
-						_version=$_version_tmp
-					fi
-					VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
-					BAM_CPPFLAGS="-I$ac_bam_path/include/bam-$VERSION_UNDERSCORE"
-				done
-			fi
-		else
-			for ac_bam_path in /usr /usr/local /opt /opt/local ; do
-				if test -d "$ac_bam_path" && test -r "$ac_bam_path"; then
-					for i in `ls -d $ac_bam_path/include/bam-* 2>/dev/null`; do
-						_version_tmp=`echo $i | sed "s#$ac_bam_path##" | sed 's/\/include\/bam-//' | sed 's/_/./'`
-						V_CHECK=`expr $_version_tmp \> $_version`
-						if test "$V_CHECK" = "1" ; then
-							_version=$_version_tmp
-	               					best_path=$ac_bam_path
-						fi
-					done
-				fi
-			done
-
-			VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
-			BAM_CPPFLAGS="-I$best_path/include/bam-$VERSION_UNDERSCORE"
-            if test "$ac_bam_lib_path" = ""
-            then
-               BAM_LDFLAGS="-L$best_path/lib"
-            fi
-
-	    		if test "x$BAM_ROOT" != "x"; then
-				if test -d "$BAM_ROOT" && test -r "$BAM_ROOT" && test -d "$BAM_ROOT/stage/lib" && test -r "$BAM_ROOT/stage/lib"; then
-					version_dir=`expr //$BAM_ROOT : '.*/\(.*\)'`
-					stage_version=`echo $version_dir | sed 's/bam_//' | sed 's/_/./g'`
-			        	stage_version_shorten=`expr $stage_version : '\([0-9]*\.[0-9]*\)'`
-					V_CHECK=`expr $stage_version_shorten \>\= $_version`
-                    if test "$V_CHECK" = "1" -a "$ac_bam_lib_path" = "" ; then
-						{ echo "$as_me:$LINENO: We will use a staged bam library from $BAM_ROOT" >&5
-echo "$as_me: We will use a staged bam library from $BAM_ROOT" >&6;}
-						BAM_CPPFLAGS="-I$BAM_ROOT"
-						BAM_LDFLAGS="-L$BAM_ROOT/stage/lib"
-					fi
-				fi
-	    		fi
-		fi
-
-		CPPFLAGS="$CPPFLAGS $BAM_CPPFLAGS"
-		export CPPFLAGS
-		LDFLAGS="$LDFLAGS $BAM_LDFLAGS"
-		export LDFLAGS
-
-		ac_ext=cc
-ac_cpp='$CXXCPP $CPPFLAGS'
-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-	     	cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-		#include <bam/version.hpp>
-
-int
-main ()
-{
-
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-
-        	echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-		succeeded=yes
-		found_system=yes
-
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-		ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-	fi
-
-	if test "$succeeded" != "yes" ; then
-		if test "$_version" = "0" ; then
-			{ { echo "$as_me:$LINENO: error: We could not detect the bam libraries (version $bam_lib_version_req_shorten or higher). If you have a staged bam library (still not installed) please specify \$BAM_ROOT in your environment and do not give a PATH to --with-bam option.  If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation." >&5
-echo "$as_me: error: We could not detect the bam libraries (version $bam_lib_version_req_shorten or higher). If you have a staged bam library (still not installed) please specify \$BAM_ROOT in your environment and do not give a PATH to --with-bam option.  If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation." >&2;}
-   { (exit 1); exit 1; }; }
-		else
-			{ echo "$as_me:$LINENO: Your bam libraries seem too old (version $_version)." >&5
-echo "$as_me: Your bam libraries seem too old (version $_version)." >&6;}
-		fi
-	else
-		BAM_LIB="-lbam"
-
-
-
-
-cat >>confdefs.h <<\_ACEOF
-#define HAVE_BAM
-_ACEOF
-
-	fi
-
-        CPPFLAGS="$CPPFLAGS_SAVED"
-       	LDFLAGS="$LDFLAGS_SAVED"
-fi
-
-
-# Make sure we can run config.sub.
-$ac_config_sub sun4 >/dev/null 2>&1 ||
-  { { echo "$as_me:$LINENO: error: cannot run $ac_config_sub" >&5
-echo "$as_me: error: cannot run $ac_config_sub" >&2;}
-   { (exit 1); exit 1; }; }
-
-echo "$as_me:$LINENO: checking build system type" >&5
-echo $ECHO_N "checking build system type... $ECHO_C" >&6
-if test "${ac_cv_build+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_cv_build_alias=$build_alias
-test -z "$ac_cv_build_alias" &&
-  ac_cv_build_alias=`$ac_config_guess`
-test -z "$ac_cv_build_alias" &&
-  { { echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
-echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
-   { (exit 1); exit 1; }; }
-ac_cv_build=`$ac_config_sub $ac_cv_build_alias` ||
-  { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_build_alias failed" >&5
-echo "$as_me: error: $ac_config_sub $ac_cv_build_alias failed" >&2;}
-   { (exit 1); exit 1; }; }
-
-fi
-echo "$as_me:$LINENO: result: $ac_cv_build" >&5
-echo "${ECHO_T}$ac_cv_build" >&6
-build=$ac_cv_build
-build_cpu=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
-build_vendor=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
-build_os=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
-
-
-
-
-
-# Check whether --with-boost-thread or --without-boost-thread was given.
-if test "${with_boost_thread+set}" = set; then
-  withval="$with_boost_thread"
-
-        if test "$withval" = "no"; then
-			want_boost="no"
-        elif test "$withval" = "yes"; then
-            want_boost="yes"
-            ax_boost_user_thread_lib=""
-        else
-		    want_boost="yes"
-			echo "using $withval"
-        	ax_boost_user_thread_lib="$withval"
-		fi
-
-else
-  want_boost="yes"
-
-fi;
-
-	if test "x$want_boost" = "xyes"; then
-
-
-		CPPFLAGS_SAVED="$CPPFLAGS"
-		CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
-		export CPPFLAGS
-
-		LDFLAGS_SAVED="$LDFLAGS"
-		LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
-		export LDFLAGS
-
-        echo "$as_me:$LINENO: checking whether the Boost::Thread library is available" >&5
-echo $ECHO_N "checking whether the Boost::Thread library is available... $ECHO_C" >&6
-if test "${ax_cv_boost_thread+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_ext=cc
-ac_cpp='$CXXCPP $CPPFLAGS'
-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-			 CXXFLAGS_SAVE=$CXXFLAGS
-
-			 if test "x$build_os" = "xsolaris" ; then
-  				 CXXFLAGS="-pthreads $CXXFLAGS"
-			 elif test "x$build_os" = "xming32" ; then
-				 CXXFLAGS="-mthreads $CXXFLAGS"
-			 else
-				CXXFLAGS="-pthread $CXXFLAGS"
-			 fi
-			 cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <boost/thread/thread.hpp>
-int
-main ()
-{
-boost::thread_group thrds;
-                                   return 0;
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_cxx_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ax_cv_boost_thread=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ax_cv_boost_thread=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-			 CXXFLAGS=$CXXFLAGS_SAVE
-             ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-fi
-echo "$as_me:$LINENO: result: $ax_cv_boost_thread" >&5
-echo "${ECHO_T}$ax_cv_boost_thread" >&6
-		if test "x$ax_cv_boost_thread" = "xyes"; then
-           if test "x$build_os" = "xsolaris" ; then
-			  BOOST_CPPFLAGS="-pthreads $BOOST_CPPFLAGS"
-		   elif test "x$build_os" = "xming32" ; then
-			  BOOST_CPPFLAGS="-mthreads $BOOST_CPPFLAGS"
-		   else
-			  BOOST_CPPFLAGS="-pthread $BOOST_CPPFLAGS"
-		   fi
-
-
-
-
-cat >>confdefs.h <<\_ACEOF
-#define HAVE_BOOST_THREAD
-_ACEOF
-
-            BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
-
-			LDFLAGS_SAVE=$LDFLAGS
-                        case "x$build_os" in
-                          *bsd* )
-                               LDFLAGS="-pthread $LDFLAGS"
-                          break;
-                          ;;
-                        esac
-            if test "x$ax_boost_user_thread_lib" = "x"; then
-                for libextension in `ls $BOOSTLIBDIR/libboost_thread*.so* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_thread.*\)\.so.*$;\1;'` `ls $BOOSTLIBDIR/libboost_thread*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_thread.*\)\.a*$;\1;'`; do
-                     ax_lib=${libextension}
-				    as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_check_lib_save_LIBS=$LIBS
-LIBS="-l$ax_lib  $LIBS"
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-/* Override any gcc2 internal prototype to avoid an error.  */
-#ifdef __cplusplus
-extern "C"
-#endif
-/* We use char because int might match the return type of a gcc2
-   builtin and then its argument prototype would still apply.  */
-char exit ();
-int
-main ()
-{
-exit ();
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  eval "$as_ac_Lib=yes"
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-eval "$as_ac_Lib=no"
-fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
-  BOOST_THREAD_LIB="-l$ax_lib";  link_thread="yes"; break
-else
-  link_thread="no"
-fi
-
-  				done
-                if test "x$link_thread" != "xyes"; then
-                for libextension in `ls $BOOSTLIBDIR/boost_thread*.dll* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_thread.*\)\.dll.*$;\1;'` `ls $BOOSTLIBDIR/boost_thread*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_thread.*\)\.a*$;\1;'` ; do
-                     ax_lib=${libextension}
-				    as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_check_lib_save_LIBS=$LIBS
-LIBS="-l$ax_lib  $LIBS"
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-/* Override any gcc2 internal prototype to avoid an error.  */
-#ifdef __cplusplus
-extern "C"
-#endif
-/* We use char because int might match the return type of a gcc2
-   builtin and then its argument prototype would still apply.  */
-char exit ();
-int
-main ()
-{
-exit ();
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  eval "$as_ac_Lib=yes"
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-eval "$as_ac_Lib=no"
-fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
-  BOOST_THREAD_LIB="-l$ax_lib";  link_thread="yes"; break
-else
-  link_thread="no"
-fi
-
-  				done
-                fi
-
-            else
-                BOOST_THREAD_LIB="$ax_boost_user_thread_lib";
-
-				link_thread="yes";
-
-
-            fi
-			if test "x$link_thread" = "xno"; then
-				{ { echo "$as_me:$LINENO: error: Could not link against $ax_lib !" >&5
-echo "$as_me: error: Could not link against $ax_lib !" >&2;}
-   { (exit 1); exit 1; }; }
-                        else
-                           case "x$build_os" in
-                              *bsd* )
-			        BOOST_LDFLAGS="-pthread $BOOST_LDFLAGS"
-                              break;
-                              ;;
-                           esac
-
-			fi
-		fi
-
-		CPPFLAGS="$CPPFLAGS_SAVED"
-    	LDFLAGS="$LDFLAGS_SAVED"
-	fi
-
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
-echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6
-# On Suns, sometimes $CPP names a directory.
-if test -n "$CPP" && test -d "$CPP"; then
-  CPP=
-fi
-if test -z "$CPP"; then
-  if test "${ac_cv_prog_CPP+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-      # Double quotes because CPP needs to be expanded
-    for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp"
-    do
-      ac_preproc_ok=false
-for ac_c_preproc_warn_flag in '' yes
-do
-  # Use a header file that comes with gcc, so configuring glibc
-  # with a fresh cross-compiler works.
-  # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-  # <limits.h> exists even on freestanding compilers.
-  # On the NeXT, cc -E runs the code through the compiler's parser,
-  # not just through cpp. "Syntax error" is here to catch this case.
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#ifdef __STDC__
-# include <limits.h>
-#else
-# include <assert.h>
-#endif
-		     Syntax error
-_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-  (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } >/dev/null; then
-  if test -s conftest.err; then
-    ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
-  else
-    ac_cpp_err=
-  fi
-else
-  ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
-  :
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-  # Broken: fails on valid input.
-continue
-fi
-rm -f conftest.err conftest.$ac_ext
-
-  # OK, works on sane cases.  Now check whether non-existent headers
-  # can be detected and how.
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <ac_nonexistent.h>
-_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-  (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } >/dev/null; then
-  if test -s conftest.err; then
-    ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
-  else
-    ac_cpp_err=
-  fi
-else
-  ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
-  # Broken: success on invalid input.
-continue
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-  # Passes both tests.
-ac_preproc_ok=:
-break
-fi
-rm -f conftest.err conftest.$ac_ext
-
-done
-# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
-rm -f conftest.err conftest.$ac_ext
-if $ac_preproc_ok; then
-  break
-fi
-
-    done
-    ac_cv_prog_CPP=$CPP
-
-fi
-  CPP=$ac_cv_prog_CPP
-else
-  ac_cv_prog_CPP=$CPP
-fi
-echo "$as_me:$LINENO: result: $CPP" >&5
-echo "${ECHO_T}$CPP" >&6
-ac_preproc_ok=false
-for ac_c_preproc_warn_flag in '' yes
-do
-  # Use a header file that comes with gcc, so configuring glibc
-  # with a fresh cross-compiler works.
-  # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-  # <limits.h> exists even on freestanding compilers.
-  # On the NeXT, cc -E runs the code through the compiler's parser,
-  # not just through cpp. "Syntax error" is here to catch this case.
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#ifdef __STDC__
-# include <limits.h>
-#else
-# include <assert.h>
-#endif
-		     Syntax error
-_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-  (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } >/dev/null; then
-  if test -s conftest.err; then
-    ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
-  else
-    ac_cpp_err=
-  fi
-else
-  ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
-  :
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-  # Broken: fails on valid input.
-continue
-fi
-rm -f conftest.err conftest.$ac_ext
-
-  # OK, works on sane cases.  Now check whether non-existent headers
-  # can be detected and how.
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <ac_nonexistent.h>
-_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-  (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } >/dev/null; then
-  if test -s conftest.err; then
-    ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
-  else
-    ac_cpp_err=
-  fi
-else
-  ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
-  # Broken: success on invalid input.
-continue
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-  # Passes both tests.
-ac_preproc_ok=:
-break
-fi
-rm -f conftest.err conftest.$ac_ext
-
-done
-# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
-rm -f conftest.err conftest.$ac_ext
-if $ac_preproc_ok; then
-  :
-else
-  { { echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check
-See \`config.log' for more details." >&5
-echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check
-See \`config.log' for more details." >&2;}
-   { (exit 1); exit 1; }; }
-fi
-
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-echo "$as_me:$LINENO: checking for egrep" >&5
-echo $ECHO_N "checking for egrep... $ECHO_C" >&6
-if test "${ac_cv_prog_egrep+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  if echo a | (grep -E '(a|b)') >/dev/null 2>&1
-    then ac_cv_prog_egrep='grep -E'
-    else ac_cv_prog_egrep='egrep'
-    fi
-fi
-echo "$as_me:$LINENO: result: $ac_cv_prog_egrep" >&5
-echo "${ECHO_T}$ac_cv_prog_egrep" >&6
- EGREP=$ac_cv_prog_egrep
-
-
-echo "$as_me:$LINENO: checking for ANSI C header files" >&5
-echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6
-if test "${ac_cv_header_stdc+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <stdlib.h>
-#include <stdarg.h>
-#include <string.h>
-#include <float.h>
-
-int
-main ()
-{
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_header_stdc=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_header_stdc=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-
-if test $ac_cv_header_stdc = yes; then
-  # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <string.h>
-
-_ACEOF
-if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
-  $EGREP "memchr" >/dev/null 2>&1; then
-  :
-else
-  ac_cv_header_stdc=no
-fi
-rm -f conftest*
-
-fi
-
-if test $ac_cv_header_stdc = yes; then
-  # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI.
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <stdlib.h>
-
-_ACEOF
-if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
-  $EGREP "free" >/dev/null 2>&1; then
-  :
-else
-  ac_cv_header_stdc=no
-fi
-rm -f conftest*
-
-fi
-
-if test $ac_cv_header_stdc = yes; then
-  # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi.
-  if test "$cross_compiling" = yes; then
-  :
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <ctype.h>
-#if ((' ' & 0x0FF) == 0x020)
-# define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
-# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
-#else
-# define ISLOWER(c) \
-		   (('a' <= (c) && (c) <= 'i') \
-		     || ('j' <= (c) && (c) <= 'r') \
-		     || ('s' <= (c) && (c) <= 'z'))
-# define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
-#endif
-
-#define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
-int
-main ()
-{
-  int i;
-  for (i = 0; i < 256; i++)
-    if (XOR (islower (i), ISLOWER (i))
-	|| toupper (i) != TOUPPER (i))
-      exit(2);
-  exit (0);
-}
-_ACEOF
-rm -f conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  :
-else
-  echo "$as_me: program exited with status $ac_status" >&5
-echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-( exit $ac_status )
-ac_cv_header_stdc=no
-fi
-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-fi
-fi
-fi
-echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
-echo "${ECHO_T}$ac_cv_header_stdc" >&6
-if test $ac_cv_header_stdc = yes; then
-
-cat >>confdefs.h <<\_ACEOF
-#define STDC_HEADERS 1
-_ACEOF
-
-fi
-
-# On IRIX 5.3, sys/types and inttypes.h are conflicting.
-
-
-
-
-
-
-
-
-
-for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \
-		  inttypes.h stdint.h unistd.h
-do
-as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for $ac_header" >&5
-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_includes_default
-
-#include <$ac_header>
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  eval "$as_ac_Header=yes"
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-eval "$as_ac_Header=no"
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-if test `eval echo '${'$as_ac_Header'}'` = yes; then
-  cat >>confdefs.h <<_ACEOF
-#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
-_ACEOF
-
-fi
-
-done
-
-
-#
-# Handle user hints
-#
-echo "$as_me:$LINENO: checking if zlib is wanted" >&5
-echo $ECHO_N "checking if zlib is wanted... $ECHO_C" >&6
-
-# Check whether --with-zlib or --without-zlib was given.
-if test "${with_zlib+set}" = set; then
-  withval="$with_zlib"
-  if test "$withval" != no ; then
-  echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-  if test -d "$withval"
-  then
-    ZLIB_HOME="$withval"
-  else
-    { echo "$as_me:$LINENO: WARNING: Sorry, $withval does not exist, checking usual places" >&5
-echo "$as_me: WARNING: Sorry, $withval does not exist, checking usual places" >&2;}
-  fi
-else
-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-fi
-else
-  echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-fi;
-
-ZLIB_HOME=/usr/local
-if test ! -f "${ZLIB_HOME}/include/zlib.h"
-then
-        ZLIB_HOME=/usr
-fi
-
-#
-# Locate zlib, if wanted
-#
-if test -n "${ZLIB_HOME}"
-then
-        ZLIB_OLD_LDFLAGS=$LDFLAGS
-        ZLIB_OLD_CPPFLAGS=$LDFLAGS
-        LDFLAGS="$LDFLAGS -L${ZLIB_HOME}/lib"
-        CPPFLAGS="$CPPFLAGS -I${ZLIB_HOME}/include"
-
-
-        ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-        echo "$as_me:$LINENO: checking for inflateEnd in -lz" >&5
-echo $ECHO_N "checking for inflateEnd in -lz... $ECHO_C" >&6
-if test "${ac_cv_lib_z_inflateEnd+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_check_lib_save_LIBS=$LIBS
-LIBS="-lz  $LIBS"
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-/* Override any gcc2 internal prototype to avoid an error.  */
-#ifdef __cplusplus
-extern "C"
-#endif
-/* We use char because int might match the return type of a gcc2
-   builtin and then its argument prototype would still apply.  */
-char inflateEnd ();
-int
-main ()
-{
-inflateEnd ();
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_lib_z_inflateEnd=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_lib_z_inflateEnd=no
-fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-echo "$as_me:$LINENO: result: $ac_cv_lib_z_inflateEnd" >&5
-echo "${ECHO_T}$ac_cv_lib_z_inflateEnd" >&6
-if test $ac_cv_lib_z_inflateEnd = yes; then
-  zlib_cv_libz=yes
-else
-  zlib_cv_libz=no
-fi
-
-        if test "${ac_cv_header_zlib_h+set}" = set; then
-  echo "$as_me:$LINENO: checking for zlib.h" >&5
-echo $ECHO_N "checking for zlib.h... $ECHO_C" >&6
-if test "${ac_cv_header_zlib_h+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-fi
-echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
-echo "${ECHO_T}$ac_cv_header_zlib_h" >&6
-else
-  # Is the header compilable?
-echo "$as_me:$LINENO: checking zlib.h usability" >&5
-echo $ECHO_N "checking zlib.h usability... $ECHO_C" >&6
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_includes_default
-#include <zlib.h>
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_header_compiler=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_header_compiler=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-echo "${ECHO_T}$ac_header_compiler" >&6
-
-# Is the header present?
-echo "$as_me:$LINENO: checking zlib.h presence" >&5
-echo $ECHO_N "checking zlib.h presence... $ECHO_C" >&6
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <zlib.h>
-_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-  (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } >/dev/null; then
-  if test -s conftest.err; then
-    ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
-  else
-    ac_cpp_err=
-  fi
-else
-  ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
-  ac_header_preproc=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-  ac_header_preproc=no
-fi
-rm -f conftest.err conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-echo "${ECHO_T}$ac_header_preproc" >&6
-
-# So?  What about this header?
-case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
-  yes:no: )
-    { echo "$as_me:$LINENO: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&5
-echo "$as_me: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
-    { echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the compiler's result" >&5
-echo "$as_me: WARNING: zlib.h: proceeding with the compiler's result" >&2;}
-    ac_header_preproc=yes
-    ;;
-  no:yes:* )
-    { echo "$as_me:$LINENO: WARNING: zlib.h: present but cannot be compiled" >&5
-echo "$as_me: WARNING: zlib.h: present but cannot be compiled" >&2;}
-    { echo "$as_me:$LINENO: WARNING: zlib.h:     check for missing prerequisite headers?" >&5
-echo "$as_me: WARNING: zlib.h:     check for missing prerequisite headers?" >&2;}
-    { echo "$as_me:$LINENO: WARNING: zlib.h: see the Autoconf documentation" >&5
-echo "$as_me: WARNING: zlib.h: see the Autoconf documentation" >&2;}
-    { echo "$as_me:$LINENO: WARNING: zlib.h:     section \"Present But Cannot Be Compiled\"" >&5
-echo "$as_me: WARNING: zlib.h:     section \"Present But Cannot Be Compiled\"" >&2;}
-    { echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the preprocessor's result" >&5
-echo "$as_me: WARNING: zlib.h: proceeding with the preprocessor's result" >&2;}
-    { echo "$as_me:$LINENO: WARNING: zlib.h: in the future, the compiler will take precedence" >&5
-echo "$as_me: WARNING: zlib.h: in the future, the compiler will take precedence" >&2;}
-    (
-      cat <<\_ASBOX
-## ------------------------------ ##
-## Report this to cole at cs.umd.edu ##
-## ------------------------------ ##
-_ASBOX
-    ) |
-      sed "s/^/$as_me: WARNING:     /" >&2
-    ;;
-esac
-echo "$as_me:$LINENO: checking for zlib.h" >&5
-echo $ECHO_N "checking for zlib.h... $ECHO_C" >&6
-if test "${ac_cv_header_zlib_h+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_cv_header_zlib_h=$ac_header_preproc
-fi
-echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
-echo "${ECHO_T}$ac_cv_header_zlib_h" >&6
-
-fi
-if test $ac_cv_header_zlib_h = yes; then
-  zlib_cv_zlib_h=yes
-else
-  zlib_cv_zlib_h=no
-fi
-
-
-        ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-        if test "$zlib_cv_libz" = "yes" -a "$zlib_cv_zlib_h" = "yes"
-        then
-                #
-                # If both library and header were found, use them
-                #
-
-echo "$as_me:$LINENO: checking for inflateEnd in -lz" >&5
-echo $ECHO_N "checking for inflateEnd in -lz... $ECHO_C" >&6
-if test "${ac_cv_lib_z_inflateEnd+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_check_lib_save_LIBS=$LIBS
-LIBS="-lz  $LIBS"
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-/* Override any gcc2 internal prototype to avoid an error.  */
-#ifdef __cplusplus
-extern "C"
-#endif
-/* We use char because int might match the return type of a gcc2
-   builtin and then its argument prototype would still apply.  */
-char inflateEnd ();
-int
-main ()
-{
-inflateEnd ();
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-  (eval $ac_link) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest$ac_exeext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_lib_z_inflateEnd=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_lib_z_inflateEnd=no
-fi
-rm -f conftest.err conftest.$ac_objext \
-      conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-echo "$as_me:$LINENO: result: $ac_cv_lib_z_inflateEnd" >&5
-echo "${ECHO_T}$ac_cv_lib_z_inflateEnd" >&6
-if test $ac_cv_lib_z_inflateEnd = yes; then
-  cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBZ 1
-_ACEOF
-
-  LIBS="-lz $LIBS"
-
-fi
-
-                echo "$as_me:$LINENO: checking zlib in ${ZLIB_HOME}" >&5
-echo $ECHO_N "checking zlib in ${ZLIB_HOME}... $ECHO_C" >&6
-                echo "$as_me:$LINENO: result: ok" >&5
-echo "${ECHO_T}ok" >&6
-				ZLIB="-lz"
-
-        else
-                #
-                # If either header or library was not found, revert and bomb
-                #
-                echo "$as_me:$LINENO: checking zlib in ${ZLIB_HOME}" >&5
-echo $ECHO_N "checking zlib in ${ZLIB_HOME}... $ECHO_C" >&6
-                LDFLAGS="$ZLIB_OLD_LDFLAGS"
-                CPPFLAGS="$ZLIB_OLD_CPPFLAGS"
-                echo "$as_me:$LINENO: result: failed" >&5
-echo "${ECHO_T}failed" >&6
-                { { echo "$as_me:$LINENO: error: either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib" >&5
-echo "$as_me: error: either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib" >&2;}
-   { (exit 1); exit 1; }; }
-        fi
-fi
-
-
-
-# Checks for header files.
-
-
-
-for ac_header in stdlib.h string.h unistd.h
-do
-as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
-  echo "$as_me:$LINENO: checking for $ac_header" >&5
-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-else
-  # Is the header compilable?
-echo "$as_me:$LINENO: checking $ac_header usability" >&5
-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_includes_default
-#include <$ac_header>
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_header_compiler=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_header_compiler=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-echo "${ECHO_T}$ac_header_compiler" >&6
-
-# Is the header present?
-echo "$as_me:$LINENO: checking $ac_header presence" >&5
-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <$ac_header>
-_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-  (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } >/dev/null; then
-  if test -s conftest.err; then
-    ac_cpp_err=$ac_c_preproc_warn_flag
-    ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
-  else
-    ac_cpp_err=
-  fi
-else
-  ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
-  ac_header_preproc=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-  ac_header_preproc=no
-fi
-rm -f conftest.err conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-echo "${ECHO_T}$ac_header_preproc" >&6
-
-# So?  What about this header?
-case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
-  yes:no: )
-    { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
-echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
-echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
-    ac_header_preproc=yes
-    ;;
-  no:yes:* )
-    { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
-echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header:     check for missing prerequisite headers?" >&5
-echo "$as_me: WARNING: $ac_header:     check for missing prerequisite headers?" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
-echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&5
-echo "$as_me: WARNING: $ac_header:     section \"Present But Cannot Be Compiled\"" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
-echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
-    { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
-echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-    (
-      cat <<\_ASBOX
-## ------------------------------ ##
-## Report this to cole at cs.umd.edu ##
-## ------------------------------ ##
-_ASBOX
-    ) |
-      sed "s/^/$as_me: WARNING:     /" >&2
-    ;;
-esac
-echo "$as_me:$LINENO: checking for $ac_header" >&5
-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  eval "$as_ac_Header=\$ac_header_preproc"
-fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-
-fi
-if test `eval echo '${'$as_ac_Header'}'` = yes; then
-  cat >>confdefs.h <<_ACEOF
-#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
-_ACEOF
-
-fi
-
-done
-
-
-# Checks for typedefs, structures, and compiler characteristics.
-echo "$as_me:$LINENO: checking for stdbool.h that conforms to C99" >&5
-echo $ECHO_N "checking for stdbool.h that conforms to C99... $ECHO_C" >&6
-if test "${ac_cv_header_stdbool_h+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-#include <stdbool.h>
-#ifndef bool
-# error bool is not defined
-#endif
-#ifndef false
-# error false is not defined
-#endif
-#if false
-# error false is not 0
-#endif
-#ifndef true
-# error true is not defined
-#endif
-#if true != 1
-# error true is not 1
-#endif
-#ifndef __bool_true_false_are_defined
-# error __bool_true_false_are_defined is not defined
-#endif
-
-	struct s { _Bool s: 1; _Bool t; } s;
-
-	char a[true == 1 ? 1 : -1];
-	char b[false == 0 ? 1 : -1];
-	char c[__bool_true_false_are_defined == 1 ? 1 : -1];
-	char d[(bool) -0.5 == true ? 1 : -1];
-	bool e = &s;
-	char f[(_Bool) -0.0 == false ? 1 : -1];
-	char g[true];
-	char h[sizeof (_Bool)];
-	char i[sizeof s.t];
-
-int
-main ()
-{
- return !a + !b + !c + !d + !e + !f + !g + !h + !i;
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_header_stdbool_h=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_header_stdbool_h=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_header_stdbool_h" >&5
-echo "${ECHO_T}$ac_cv_header_stdbool_h" >&6
-echo "$as_me:$LINENO: checking for _Bool" >&5
-echo $ECHO_N "checking for _Bool... $ECHO_C" >&6
-if test "${ac_cv_type__Bool+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_includes_default
-int
-main ()
-{
-if ((_Bool *) 0)
-  return 0;
-if (sizeof (_Bool))
-  return 0;
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_type__Bool=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_type__Bool=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_type__Bool" >&5
-echo "${ECHO_T}$ac_cv_type__Bool" >&6
-if test $ac_cv_type__Bool = yes; then
-
-cat >>confdefs.h <<_ACEOF
-#define HAVE__BOOL 1
-_ACEOF
-
-
-fi
-
-if test $ac_cv_header_stdbool_h = yes; then
-
-cat >>confdefs.h <<\_ACEOF
-#define HAVE_STDBOOL_H 1
-_ACEOF
-
-fi
-
-echo "$as_me:$LINENO: checking for inline" >&5
-echo $ECHO_N "checking for inline... $ECHO_C" >&6
-if test "${ac_cv_c_inline+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_cv_c_inline=no
-for ac_kw in inline __inline__ __inline; do
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#ifndef __cplusplus
-typedef int foo_t;
-static $ac_kw foo_t static_foo () {return 0; }
-$ac_kw foo_t foo () {return 0; }
-#endif
-
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_c_inline=$ac_kw; break
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-done
-
-fi
-echo "$as_me:$LINENO: result: $ac_cv_c_inline" >&5
-echo "${ECHO_T}$ac_cv_c_inline" >&6
-
-
-case $ac_cv_c_inline in
-  inline | yes) ;;
-  *)
-    case $ac_cv_c_inline in
-      no) ac_val=;;
-      *) ac_val=$ac_cv_c_inline;;
-    esac
-    cat >>confdefs.h <<_ACEOF
-#ifndef __cplusplus
-#define inline $ac_val
-#endif
-_ACEOF
-    ;;
-esac
-
-echo "$as_me:$LINENO: checking for pid_t" >&5
-echo $ECHO_N "checking for pid_t... $ECHO_C" >&6
-if test "${ac_cv_type_pid_t+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_includes_default
-int
-main ()
-{
-if ((pid_t *) 0)
-  return 0;
-if (sizeof (pid_t))
-  return 0;
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_type_pid_t=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_type_pid_t=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_type_pid_t" >&5
-echo "${ECHO_T}$ac_cv_type_pid_t" >&6
-if test $ac_cv_type_pid_t = yes; then
-  :
-else
-
-cat >>confdefs.h <<_ACEOF
-#define pid_t int
-_ACEOF
-
-fi
-
-echo "$as_me:$LINENO: checking for size_t" >&5
-echo $ECHO_N "checking for size_t... $ECHO_C" >&6
-if test "${ac_cv_type_size_t+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_includes_default
-int
-main ()
-{
-if ((size_t *) 0)
-  return 0;
-if (sizeof (size_t))
-  return 0;
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_type_size_t=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_type_size_t=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
-echo "${ECHO_T}$ac_cv_type_size_t" >&6
-if test $ac_cv_type_size_t = yes; then
-  :
-else
-
-cat >>confdefs.h <<_ACEOF
-#define size_t unsigned
-_ACEOF
-
-fi
-
-echo "$as_me:$LINENO: checking for ptrdiff_t" >&5
-echo $ECHO_N "checking for ptrdiff_t... $ECHO_C" >&6
-if test "${ac_cv_type_ptrdiff_t+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-$ac_includes_default
-int
-main ()
-{
-if ((ptrdiff_t *) 0)
-  return 0;
-if (sizeof (ptrdiff_t))
-  return 0;
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_type_ptrdiff_t=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_type_ptrdiff_t=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_type_ptrdiff_t" >&5
-echo "${ECHO_T}$ac_cv_type_ptrdiff_t" >&6
-if test $ac_cv_type_ptrdiff_t = yes; then
-
-cat >>confdefs.h <<_ACEOF
-#define HAVE_PTRDIFF_T 1
-_ACEOF
-
-
-fi
-
-
-# Checks for library functions.
-#AC_FUNC_FORK
-#AC_CHECK_FUNCS([floor memmove pow regcomp sqrt strchr strcspn strspn strstr])
-
-# check the platform
-echo "$as_me:$LINENO: checking host system type" >&5
-echo $ECHO_N "checking host system type... $ECHO_C" >&6
-if test "${ac_cv_host+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  ac_cv_host_alias=$host_alias
-test -z "$ac_cv_host_alias" &&
-  ac_cv_host_alias=$ac_cv_build_alias
-ac_cv_host=`$ac_config_sub $ac_cv_host_alias` ||
-  { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_host_alias failed" >&5
-echo "$as_me: error: $ac_config_sub $ac_cv_host_alias failed" >&2;}
-   { (exit 1); exit 1; }; }
-
-fi
-echo "$as_me:$LINENO: result: $ac_cv_host" >&5
-echo "${ECHO_T}$ac_cv_host" >&6
-host=$ac_cv_host
-host_cpu=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
-host_vendor=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
-host_os=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
-
-
-
-# set CFLAGS and CXXFLAGS
-user_CFLAGS=${CFLAGS}
-generic_CFLAGS="-Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized"
-ext_CFLAGS=""
-debug_CFLAGS=""
-#echo "${host_cpu}-${host_os}"
-case "${host_cpu}-${host_os}" in
-  i*86-*linux*)
-	    ext_CFLAGS="-march=i686";;
-  i*86-darwin*)
-	CFLAGS="-m64"
-	cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-
-int
-main ()
-{
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ext_CFLAGS="-arch x86_64"
-else
-  echo "$as_me: failed program was:" >&5
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-
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-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext;;
-  *)
-    echo "$as_me:$LINENO: checking if gcc accepts -m64" >&5
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-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
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-rm -f conftest.$ac_objext
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-  echo "$as_me: failed program was:" >&5
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-
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-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext;;
-esac
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-
-# Check whether --enable-intel64 or --disable-intel64 was given.
-if test "${enable_intel64+set}" = set; then
-  enableval="$enable_intel64"
-  ext_CFLAGS="${ext_CFLAGS} -march=nocona"
-fi;
-
-# Check whether --enable-debug or --disable-debug was given.
-if test "${enable_debug+set}" = set; then
-  enableval="$enable_debug"
-
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-  enable_debug=no
-fi;
-
-
-# Check whether --enable-optim or --disable-optim was given.
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-
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-
-
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-
-
-# Check whether --enable-profiling or --disable-profiling was given.
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-
-CFLAGS="${generic_CFLAGS} ${ext_CFLAGS} ${user_CFLAGS} ${debug_CFLAGS} ${OPENMP_CFLAGS}"
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-
-# Checks for structures/functions that can be used to determine system memory
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-echo $ECHO_N "checking for struct sysinfo.totalram... $ECHO_C" >&6
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-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <sys/sysinfo.h>
-
-int
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-{
-static struct sysinfo ac_aggr;
-if (ac_aggr.totalram)
-return 0;
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
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-  rm -f conftest.er1
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-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
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-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
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-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
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-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
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-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <sys/sysinfo.h>
-
-int
-main ()
-{
-static struct sysinfo ac_aggr;
-if (sizeof ac_aggr.totalram)
-return 0;
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-  return 0;
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-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
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-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
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-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
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-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_member_struct_sysinfo_totalram=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_member_struct_sysinfo_totalram=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_member_struct_sysinfo_totalram" >&5
-echo "${ECHO_T}$ac_cv_member_struct_sysinfo_totalram" >&6
-if test $ac_cv_member_struct_sysinfo_totalram = yes; then
-
-cat >>confdefs.h <<_ACEOF
-#define HAVE_STRUCT_SYSINFO_TOTALRAM 1
-_ACEOF
-
-
-fi
-
-echo "$as_me:$LINENO: checking whether sysctl is declared" >&5
-echo $ECHO_N "checking whether sysctl is declared... $ECHO_C" >&6
-if test "${ac_cv_have_decl_sysctl+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <sys/sysctl.h>
-
-int
-main ()
-{
-#ifndef sysctl
-  char *p = (char *) sysctl;
-#endif
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
-			 || test ! -s conftest.err'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_have_decl_sysctl=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_have_decl_sysctl=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_have_decl_sysctl" >&5
-echo "${ECHO_T}$ac_cv_have_decl_sysctl" >&6
-if test $ac_cv_have_decl_sysctl = yes; then
-
-cat >>confdefs.h <<_ACEOF
-#define HAVE_DECL_SYSCTL 1
-_ACEOF
-
-
-else
-  cat >>confdefs.h <<_ACEOF
-#define HAVE_DECL_SYSCTL 0
-_ACEOF
-
-
-fi
-echo "$as_me:$LINENO: checking whether CTL_HW is declared" >&5
-echo $ECHO_N "checking whether CTL_HW is declared... $ECHO_C" >&6
-if test "${ac_cv_have_decl_CTL_HW+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <sys/sysctl.h>
-
-int
-main ()
-{
-#ifndef CTL_HW
-  char *p = (char *) CTL_HW;
-#endif
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
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-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_have_decl_CTL_HW=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_have_decl_CTL_HW=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_have_decl_CTL_HW" >&5
-echo "${ECHO_T}$ac_cv_have_decl_CTL_HW" >&6
-if test $ac_cv_have_decl_CTL_HW = yes; then
-
-cat >>confdefs.h <<_ACEOF
-#define HAVE_DECL_CTL_HW 1
-_ACEOF
-
-
-else
-  cat >>confdefs.h <<_ACEOF
-#define HAVE_DECL_CTL_HW 0
-_ACEOF
-
-
-fi
-echo "$as_me:$LINENO: checking whether HW_PHYSMEM is declared" >&5
-echo $ECHO_N "checking whether HW_PHYSMEM is declared... $ECHO_C" >&6
-if test "${ac_cv_have_decl_HW_PHYSMEM+set}" = set; then
-  echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-  cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h.  */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h.  */
-#include <sys/sysctl.h>
-
-int
-main ()
-{
-#ifndef HW_PHYSMEM
-  char *p = (char *) HW_PHYSMEM;
-#endif
-
-  ;
-  return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>conftest.er1
-  ac_status=$?
-  grep -v '^ *+' conftest.er1 >conftest.err
-  rm -f conftest.er1
-  cat conftest.err >&5
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); } &&
-	 { ac_try='test -z "$ac_c_werror_flag"
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-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; } &&
-	 { ac_try='test -s conftest.$ac_objext'
-  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-  (eval $ac_try) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; }; then
-  ac_cv_have_decl_HW_PHYSMEM=yes
-else
-  echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_have_decl_HW_PHYSMEM=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_have_decl_HW_PHYSMEM" >&5
-echo "${ECHO_T}$ac_cv_have_decl_HW_PHYSMEM" >&6
-if test $ac_cv_have_decl_HW_PHYSMEM = yes; then
-
-cat >>confdefs.h <<_ACEOF
-#define HAVE_DECL_HW_PHYSMEM 1
-_ACEOF
-
-
-else
-  cat >>confdefs.h <<_ACEOF
-#define HAVE_DECL_HW_PHYSMEM 0
-_ACEOF
-
-
-fi
-
-
-
-# test to see if srcdir already configured
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-  { { echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
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-
-# test whether we have cygpath
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-    CYGPATH_W=echo
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-
-
-# Define the identity of the package.
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-
-
-cat >>confdefs.h <<_ACEOF
-#define PACKAGE "$PACKAGE"
-_ACEOF
-
-
-cat >>confdefs.h <<_ACEOF
-#define VERSION "$VERSION"
-_ACEOF
-
-# Some tools Automake needs.
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-ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"}
-
-
-AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"}
-
-
-AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"}
-
-
-AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"}
-
-
-MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"}
-
-install_sh=${install_sh-"$am_aux_dir/install-sh"}
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-# Installed binaries are usually stripped using `strip' when the user
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-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
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-STRIP=$ac_cv_prog_STRIP
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-echo "${ECHO_T}$STRIP" >&6
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-  echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
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-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
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-ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP
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-echo "${ECHO_T}$ac_ct_STRIP" >&6
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-echo "${ECHO_T}no" >&6
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-  STRIP="$ac_cv_prog_STRIP"
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-
-fi
-INSTALL_STRIP_PROGRAM="\${SHELL} \$(install_sh) -c -s"
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-# We need awk for the "check" target.  The system "awk" is bad on
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-echo "$as_me:$LINENO: checking how to create a pax tar archive" >&5
-echo $ECHO_N "checking how to create a pax tar archive... $ECHO_C" >&6
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-_am_tools=${am_cv_prog_tar_pax-$_am_tools}
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-   ($_am_tar --version) >&5 2>&5
-   ac_status=$?
-   echo "$as_me:$LINENO: \$? = $ac_status" >&5
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-    am__tar="$_am_tar --format=posix -chf - "'"$$tardir"'
-    am__tar_="$_am_tar --format=posix -chf - "'"$tardir"'
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-    am__tar='tar chf - "$$tardir"'
-    am__tar_='tar chf - "$tardir"'
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-	     CONFIG_SHELL=$as_dir/$as_base
-	     export CONFIG_SHELL
-	     exec "$CONFIG_SHELL" "$0" ${1+"$@"}
-	   fi;;
-	 esac
-       done
-done
-;;
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-
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-  *)       ECHO_N= ECHO_C='\c' ECHO_T= ;;
-esac
-
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-  as_expr=expr
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-  as_expr=false
-fi
-
-rm -f conf$$ conf$$.exe conf$$.file
-echo >conf$$.file
-if ln -s conf$$.file conf$$ 2>/dev/null; then
-  # We could just check for DJGPP; but this test a) works b) is more generic
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-rm -f conf$$ conf$$.exe conf$$.file
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-if mkdir -p . 2>/dev/null; then
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-  test -d ./-p && rmdir ./-p
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-as_executable_p="test -f"
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-# Sed expression to map a string onto a valid variable name.
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-
-
-# IFS
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-as_nl='
-'
-IFS=" 	$as_nl"
-
-# CDPATH.
-$as_unset CDPATH
-
-exec 6>&1
-
-# Open the log real soon, to keep \$[0] and so on meaningful, and to
-# report actual input values of CONFIG_FILES etc. instead of their
-# values after options handling.  Logging --version etc. is OK.
-exec 5>>config.log
-{
-  echo
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-## Running $as_me. ##
-_ASBOX
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-cat >&5 <<_CSEOF
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-  CONFIG_FILES    = $CONFIG_FILES
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-_CSEOF
-echo "on `(hostname || uname -n) 2>/dev/null | sed 1q`" >&5
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-# Files that config.status was made for.
-if test -n "$ac_config_files"; then
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-if test -n "$ac_config_headers"; then
-  echo "config_headers=\"$ac_config_headers\"" >>$CONFIG_STATUS
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-
-if test -n "$ac_config_links"; then
-  echo "config_links=\"$ac_config_links\"" >>$CONFIG_STATUS
-fi
-
-if test -n "$ac_config_commands"; then
-  echo "config_commands=\"$ac_config_commands\"" >>$CONFIG_STATUS
-fi
-
-cat >>$CONFIG_STATUS <<\_ACEOF
-
-ac_cs_usage="\
-\`$as_me' instantiates files from templates according to the
-current configuration.
-
-Usage: $0 [OPTIONS] [FILE]...
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-  -h, --help       print this help, then exit
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-  -q, --quiet      do not print progress messages
-  -d, --debug      don't remove temporary files
-      --recheck    update $as_me by reconfiguring in the same conditions
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-		   instantiate the configuration file FILE
-  --header=FILE[:TEMPLATE]
-		   instantiate the configuration header FILE
-
-Configuration files:
-$config_files
-
-Configuration headers:
-$config_headers
-
-Configuration commands:
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-
-Report bugs to <bug-autoconf at gnu.org>."
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-
-cat >>$CONFIG_STATUS <<_ACEOF
-ac_cs_version="\\
-cufflinks config.status 1.0.2
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-Copyright (C) 2003 Free Software Foundation, Inc.
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-cat >>$CONFIG_STATUS <<\_ACEOF
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-  -*)
-    ac_option=$1
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-    ac_shift=shift
-    ;;
-  *) # This is not an option, so the user has probably given explicit
-     # arguments.
-     ac_option=$1
-     ac_need_defaults=false;;
-  esac
-
-  case $ac_option in
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-cat >>$CONFIG_STATUS <<\_ACEOF
-  -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
-    ac_cs_recheck=: ;;
-  --version | --vers* | -V )
-    echo "$ac_cs_version"; exit 0 ;;
-  --he | --h)
-    # Conflict between --help and --header
-    { { echo "$as_me:$LINENO: error: ambiguous option: $1
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-echo "$as_me: error: ambiguous option: $1
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-   { (exit 1); exit 1; }; };;
-  --help | --hel | -h )
-    echo "$ac_cs_usage"; exit 0 ;;
-  --debug | --d* | -d )
-    debug=: ;;
-  --file | --fil | --fi | --f )
-    $ac_shift
-    CONFIG_FILES="$CONFIG_FILES $ac_optarg"
-    ac_need_defaults=false;;
-  --header | --heade | --head | --hea )
-    $ac_shift
-    CONFIG_HEADERS="$CONFIG_HEADERS $ac_optarg"
-    ac_need_defaults=false;;
-  -q | -quiet | --quiet | --quie | --qui | --qu | --q \
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-    ac_cs_silent=: ;;
-
-  # This is an error.
-  -*) { { echo "$as_me:$LINENO: error: unrecognized option: $1
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-echo "$as_me: error: unrecognized option: $1
-Try \`$0 --help' for more information." >&2;}
-   { (exit 1); exit 1; }; } ;;
-
-  *) ac_config_targets="$ac_config_targets $1" ;;
-
-  esac
-  shift
-done
-
-ac_configure_extra_args=
-
-if $ac_cs_silent; then
-  exec 6>/dev/null
-  ac_configure_extra_args="$ac_configure_extra_args --silent"
-fi
-
-_ACEOF
-cat >>$CONFIG_STATUS <<_ACEOF
-if \$ac_cs_recheck; then
-  echo "running $SHELL $0 " $ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
-  exec $SHELL $0 $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
-fi
-
-_ACEOF
-
-cat >>$CONFIG_STATUS <<_ACEOF
-#
-# INIT-COMMANDS section.
-#
-
-AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"
-
-_ACEOF
-
-
-
-cat >>$CONFIG_STATUS <<\_ACEOF
-for ac_config_target in $ac_config_targets
-do
-  case "$ac_config_target" in
-  # Handling of arguments.
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-  "depfiles" ) CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
-  "config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
-  *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
-echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
-   { (exit 1); exit 1; }; };;
-  esac
-done
-
-# If the user did not use the arguments to specify the items to instantiate,
-# then the envvar interface is used.  Set only those that are not.
-# We use the long form for the default assignment because of an extremely
-# bizarre bug on SunOS 4.1.3.
-if $ac_need_defaults; then
-  test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
-  test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
-  test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
-fi
-
-# Have a temporary directory for convenience.  Make it in the build tree
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-# creating and moving files from /tmp can sometimes cause problems.
-# Create a temporary directory, and hook for its removal unless debugging.
-$debug ||
-{
-  trap 'exit_status=$?; rm -rf $tmp && exit $exit_status' 0
-  trap '{ (exit 1); exit 1; }' 1 2 13 15
-}
-
-# Create a (secure) tmp directory for tmp files.
-
-{
-  tmp=`(umask 077 && mktemp -d -q "./confstatXXXXXX") 2>/dev/null` &&
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-}  ||
-{
-  tmp=./confstat$$-$RANDOM
-  (umask 077 && mkdir $tmp)
-} ||
-{
-   echo "$me: cannot create a temporary directory in ." >&2
-   { (exit 1); exit 1; }
-}
-
-_ACEOF
-
-cat >>$CONFIG_STATUS <<_ACEOF
-
-#
-# CONFIG_FILES section.
-#
-
-# No need to generate the scripts if there are no CONFIG_FILES.
-# This happens for instance when ./config.status config.h
-if test -n "\$CONFIG_FILES"; then
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-s, at SHELL@,$SHELL,;t t
-s, at PATH_SEPARATOR@,$PATH_SEPARATOR,;t t
-s, at PACKAGE_NAME@,$PACKAGE_NAME,;t t
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-s, at PACKAGE_VERSION@,$PACKAGE_VERSION,;t t
-s, at PACKAGE_STRING@,$PACKAGE_STRING,;t t
-s, at PACKAGE_BUGREPORT@,$PACKAGE_BUGREPORT,;t t
-s, at exec_prefix@,$exec_prefix,;t t
-s, at prefix@,$prefix,;t t
-s, at program_transform_name@,$program_transform_name,;t t
-s, at bindir@,$bindir,;t t
-s, at sbindir@,$sbindir,;t t
-s, at libexecdir@,$libexecdir,;t t
-s, at datadir@,$datadir,;t t
-s, at sysconfdir@,$sysconfdir,;t t
-s, at sharedstatedir@,$sharedstatedir,;t t
-s, at localstatedir@,$localstatedir,;t t
-s, at libdir@,$libdir,;t t
-s, at includedir@,$includedir,;t t
-s, at oldincludedir@,$oldincludedir,;t t
-s, at infodir@,$infodir,;t t
-s, at mandir@,$mandir,;t t
-s, at build_alias@,$build_alias,;t t
-s, at host_alias@,$host_alias,;t t
-s, at target_alias@,$target_alias,;t t
-s, at DEFS@,$DEFS,;t t
-s, at ECHO_C@,$ECHO_C,;t t
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-s, at AUTOCONF@,$AUTOCONF,;t t
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-s, at PYTHON@,$PYTHON,;t t
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-s, at ac_ct_RANLIB@,$ac_ct_RANLIB,;t t
-s, at PYTHON_VERSION@,$PYTHON_VERSION,;t t
-s, at PYTHON_PREFIX@,$PYTHON_PREFIX,;t t
-s, at PYTHON_EXEC_PREFIX@,$PYTHON_EXEC_PREFIX,;t t
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-s, at host@,$host,;t t
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-s, at LIBOBJS@,$LIBOBJS,;t t
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-CEOF
-
-_ACEOF
-
-  cat >>$CONFIG_STATUS <<\_ACEOF
-  # Split the substitutions into bite-sized pieces for seds with
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-      # The purpose of the label and of the branching condition is to
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-
-_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
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-  * )   ac_file_in=$ac_file.in ;;
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-  # Compute @srcdir@, @top_srcdir@, and @INSTALL@ for subdirectories.
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-	 X"$ac_file" : 'X\(//\)[^/]' \| \
-	 X"$ac_file" : 'X\(//\)$' \| \
-	 X"$ac_file" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
-echo X"$ac_file" |
-    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-  	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-  	  /^X\(\/\/\)$/{ s//\1/; q; }
-  	  /^X\(\/\).*/{ s//\1/; q; }
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-  { if $as_mkdir_p; then
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-	 X"$as_dir" : 'X\(//\)[^/]' \| \
-	 X"$as_dir" : 'X\(//\)$' \| \
-	 X"$as_dir" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
-echo X"$as_dir" |
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-  	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-  	  /^X\(\/\/\)$/{ s//\1/; q; }
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-
-  ac_builddir=.
-
-if test "$ac_dir" != .; then
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-
-case $srcdir in
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-#
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-  	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-  	  /^X\(\/\/\)$/{ s//\1/; q; }
-  	  /^X\(\/\).*/{ s//\1/; q; }
-  	  s/.*/./; q'`
-  else
-    continue
-  fi
-  # Extract the definition of DEPDIR, am__include, and am__quote
-  # from the Makefile without running `make'.
-  DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
-  test -z "$DEPDIR" && continue
-  am__include=`sed -n 's/^am__include = //p' < "$mf"`
-  test -z "am__include" && continue
-  am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
-  # When using ansi2knr, U may be empty or an underscore; expand it
-  U=`sed -n 's/^U = //p' < "$mf"`
-  # Find all dependency output files, they are included files with
-  # $(DEPDIR) in their names.  We invoke sed twice because it is the
-  # simplest approach to changing $(DEPDIR) to its actual value in the
-  # expansion.
-  for file in `sed -n "
-    s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \
-       sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
-    # Make sure the directory exists.
-    test -f "$dirpart/$file" && continue
-    fdir=`(dirname "$file") 2>/dev/null ||
-$as_expr X"$file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$file" : 'X\(//\)[^/]' \| \
-	 X"$file" : 'X\(//\)$' \| \
-	 X"$file" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
-echo X"$file" |
-    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-  	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-  	  /^X\(\/\/\)$/{ s//\1/; q; }
-  	  /^X\(\/\).*/{ s//\1/; q; }
-  	  s/.*/./; q'`
-    { if $as_mkdir_p; then
-    mkdir -p $dirpart/$fdir
-  else
-    as_dir=$dirpart/$fdir
-    as_dirs=
-    while test ! -d "$as_dir"; do
-      as_dirs="$as_dir $as_dirs"
-      as_dir=`(dirname "$as_dir") 2>/dev/null ||
-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$as_dir" : 'X\(//\)[^/]' \| \
-	 X"$as_dir" : 'X\(//\)$' \| \
-	 X"$as_dir" : 'X\(/\)' \| \
-	 .     : '\(.\)' 2>/dev/null ||
-echo X"$as_dir" |
-    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-  	  /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-  	  /^X\(\/\/\)$/{ s//\1/; q; }
-  	  /^X\(\/\).*/{ s//\1/; q; }
-  	  s/.*/./; q'`
-    done
-    test ! -n "$as_dirs" || mkdir $as_dirs
-  fi || { { echo "$as_me:$LINENO: error: cannot create directory $dirpart/$fdir" >&5
-echo "$as_me: error: cannot create directory $dirpart/$fdir" >&2;}
-   { (exit 1); exit 1; }; }; }
-
-    # echo "creating $dirpart/$file"
-    echo '# dummy' > "$dirpart/$file"
-  done
-done
- ;;
-  esac
-done
-_ACEOF
-
-cat >>$CONFIG_STATUS <<\_ACEOF
-
-{ (exit 0); exit 0; }
-_ACEOF
-chmod +x $CONFIG_STATUS
-ac_clean_files=$ac_clean_files_save
-
-
-# configure is writing to config.log, and then calls config.status.
-# config.status does its own redirection, appending to config.log.
-# Unfortunately, on DOS this fails, as config.log is still kept open
-# by configure, so config.status won't be able to write to it; its
-# output is simply discarded.  So we exec the FD to /dev/null,
-# effectively closing config.log, so it can be properly (re)opened and
-# appended to by config.status.  When coming back to configure, we
-# need to make the FD available again.
-if test "$no_create" != yes; then
-  ac_cs_success=:
-  ac_config_status_args=
-  test "$silent" = yes &&
-    ac_config_status_args="$ac_config_status_args --quiet"
-  exec 5>/dev/null
-  $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
-  exec 5>>config.log
-  # Use ||, not &&, to avoid exiting from the if with $? = 1, which
-  # would make configure fail if this is the last instruction.
-  $ac_cs_success || { (exit 1); exit 1; }
-fi
-
-# dump some configuration confirmations
-echo \
-"
--- ${PACKAGE_STRING} Configuration Results --
-  C++ compiler:        ${CXX} ${CXXFLAGS} ${LDFLAGS}"
-
-if test x"${GCC}" = x"yes" ; then
-   gcc_version=`${CC} --version | head -n 1`
-   echo "  GCC version:         ${gcc_version}"
-else
-   gcc_version=''
-fi
-
-echo \
-"  Host System type:    ${host}
-  Install prefix:      ${prefix}
-  Install eprefix:     ${exec_prefix}
-
-  See config.h for further configuration information.
-  Email <${PACKAGE_BUGREPORT}> with questions and bug reports.
-"
-
-if test x"${PYTHON}" = x":"  ||  ! test -x "${PYTHON}"; then
-    echo "WARNING! python was not found and is required to run some utility scripts"
-    echo "  We recommend installing python and pointing configure to the installed location"
-fi
-

-- 
Transcript assembly, differential expression, and differential regulation for RNA-Seq.



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