[med-svn] [SCM] r-bioc-limma branch, meta, updated. meta/3.10.0-1-3-ga58ca49
Charles Plessy
plessy at debian.org
Thu Apr 12 02:50:53 UTC 2012
The following commit has been merged in the meta branch:
commit 75bd70d4a7ce70acea3294fa61e20b9653c9587a
Author: Charles Plessy <plessy at debian.org>
Date: Thu Apr 12 11:47:44 2012 +0900
Buildd logs for r-bioc-limma 3.10.3-1.
diff --git a/armel.log b/armel.log
index 798b86c..746ced7 100644
--- a/armel.log
+++ b/armel.log
@@ -1,67 +1,70 @@
-From buildd at arnold.debian.org Fri Nov 04 06:05:36 2011
-Return-path: <buildd at arnold.debian.org>
+From buildd at antheil.debian.org Wed Mar 07 05:04:51 2012
+Return-path: <buildd at antheil.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
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-Received: from arnold.islands.arm.com ([217.140.96.57] helo=arnold.debian.org)
+ (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
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+ for logs at buildd.debian.org; Wed, 07 Mar 2012 05:04:51 +0000
+Received: from antheil.islands.arm.com ([217.140.96.60]
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- CN=arnold.debian.org, EMAIL=hostmaster at arnold.debian.org (verified)
+ CN=antheil.debian.org, EMAIL=hostmaster at antheil.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
- id 1RMCuF-0008HH-CQ
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-Date: Fri, 04 Nov 2011 06:05:34 +0000
-Message-Id: <E1RMCuE-0000YO-6X at arnold.debian.org>
-From: buildd on arnold <buildd at arnold.debian.org>
-To: buildd-porters at arnold.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on armel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
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+Received: from buildd by antheil.debian.org with local (Exim 4.72)
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+ id 1S593Q-0005rx-Oy; Wed, 07 Mar 2012 05:04:49 +0000
+Date: Wed, 07 Mar 2012 05:04:48 +0000
+Message-Id: <E1S593Q-0005rx-Oy at antheil.debian.org>
+From: buildd on antheil <buildd at antheil.debian.org>
+To: buildd-porters at antheil.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on armel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on arnold.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on antheil.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (armel) 04 Nov 2011 05:57 ║
+║ r-bioc-limma 3.10.3-1 (armel) 07 Mar 2012 04:55 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: armel
-Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [5890 kB]
+Get:1 http://incoming.debian.org unstable InRelease [197 kB]
+Get:2 http://ftp.uk.debian.org unstable InRelease [197 kB]
Ign http://incoming.debian.org InRelease
+Get:3 http://ftp.uk.debian.org unstable/main Sources [6231 kB]
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1604 B]
-Get:6 http://incoming.debian.org unstable/main Sources [5890 kB]
-Get:7 http://ftp.uk.debian.org unstable/contrib Sources [56.9 kB]
-Get:8 http://ftp.uk.debian.org unstable/non-free Sources [103 kB]
-Get:9 http://ftp.uk.debian.org unstable/main armel Packages [7651 kB]
-Get:10 http://ftp.uk.debian.org unstable/contrib armel Packages [55.2 kB]
+Get:5 http://incoming.debian.org Release [1616 B]
+Get:6 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:7 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:8 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:9 http://incoming.debian.org unstable/main armel Packages [5751 kB]
+Get:10 http://ftp.uk.debian.org unstable/contrib Sources [55.0 kB]
+Get:11 http://ftp.uk.debian.org unstable/non-free Sources [98.8 kB]
+Get:12 http://ftp.uk.debian.org unstable/main armel Packages [5751 kB]
+Get:13 http://ftp.uk.debian.org unstable/contrib armel Packages [36.9 kB]
Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:11 http://ftp.uk.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
-Get:14 http://incoming.debian.org unstable/main armel Packages [7651 kB]
-Get:15 http://incoming.debian.org unstable/contrib armel Packages [55.2 kB]
+Get:14 http://ftp.uk.debian.org unstable/main TranslationIndex [2154 B]
+Get:15 http://ftp.uk.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:16 http://ftp.uk.debian.org unstable/main Translation-en [3906 kB]
+Get:17 http://incoming.debian.org unstable/contrib armel Packages [36.9 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:17 http://incoming.debian.org Sources [31.9 kB]
-Get:18 http://incoming.debian.org Packages [571 kB]
+Get:18 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:19 http://incoming.debian.org Sources [63.4 kB]
+Get:20 http://incoming.debian.org Packages [849 kB]
+Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:22 http://incoming.debian.org unstable/main Translation-en [3906 kB]
Ign http://incoming.debian.org Translation-en
-Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 28.4 MB in 1min 3s (448 kB/s)
+Fetched 33.5 MB in 1min 24s (395 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,11 +85,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (830 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (931 kB/s)
Download complete and in download only mode
Check arch
@@ -100,60 +103,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 21 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 21 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
+debianutils: already installed (4.2.1)
diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42-1)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.10)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-7)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.12)
-sysvinit: already installed (2.88dsf-13.12)
-tar: already installed (1.26-2)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-1.2)
+mount: already installed (2.20.1-1.2)
+util-linux: already installed (2.20.1-1.2)
+libc6-dev: already installed (2.13-26)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -163,7 +166,7 @@ The following extra packages will be installed:
bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcc1
libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
@@ -171,8 +174,8 @@ The following extra packages will be installed:
libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip
+ x11-common xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
@@ -180,210 +183,220 @@ Suggested packages:
gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 76 newly installed, 0 to remove and 13 not upgraded.
-Need to get 67.0 MB of archives.
-After this operation, 119 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.2-1 [28.4 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.2-1 [136 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.2-1 [24.7 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.2-1 [4330 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.2-1 [1709 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.2-1 [5205 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.2-1 [4541 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.2-1 [291 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-4 [34.0 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-4 [223 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.8-1 [1552 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-5 [815 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-2 [110 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-3 [25.4 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7.2 [114 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.7-2 [391 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-3 [270 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.2-1 [255 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-2 [50.1 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.23.8-1 [401 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.46-3 [181 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-3 [16.0 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-3 [21.5 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-3 [39.5 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.4-2 [833 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-3 [14.8 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-3 [9178 B]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-2 [30.4 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6.1 [908 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-2 [40.4 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-3 [53.7 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-3 [334 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.29.4-2 [422 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-4 [111 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-2 [28.1 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8c-2 [152 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-2 [188 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-3 [46.0 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-2 [16.0 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-2 [177 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.3 [207 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-6 [1072 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-2 [990 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.09-2 [247 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.09-2 [51.8 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-5 [138 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-5 [1980 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.2-1 [4924 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.1-3 [1126 B]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2.20110419-2 [278 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-2 [287 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-7 [34.1 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8c-2 [258 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.1-1 [2200 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.1-1 [2374 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armel 5.9-2 [64.3 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-2 [411 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-4 [301 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.46-3 [259 kB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-7 [237 kB]
-Get:77 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-7 [888 B]
-Get:78 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-4 [329 kB]
-Get:79 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-5 [190 kB]
-Get:80 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.10-1 [1569 kB]
-Get:82 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.10-1 [1123 kB]
-Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.14.0-1 [19.1 MB]
-Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+ libstdc++6-4.6-dev zlib1g
+9 upgraded, 76 newly installed, 0 to remove and 35 not upgraded.
+Need to get 68.6 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.3-1 [28.4 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.3-1 [139 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.3-1 [24.7 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.3-1 [4324 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.3-1 [1709 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.3-1 [5238 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.3-1 [4544 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.3-1 [289 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main zlib1g armel 1:1.2.6.dfsg-2 [85.4 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.1-1 [34.9 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.10-1 [250 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-4 [223 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7.2 [114 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.8-1 [391 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-3.1 [271 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.24.4-1 [397 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.47-1 [182 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-4+b1 [16.2 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-4 [21.9 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.8-2 [42.6 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.4-4 [833 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.8-2 [16.2 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.8-2 [9742 B]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-2 [30.4 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-7 [906 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armel 3.0.10-3 [22.8 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.30.2-6 [1744 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-7 [818 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.4-2 [140 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.5-3 [26.6 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.3-1 [254 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-2 [50.1 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8d-1 [153 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.17-1 [42.5 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-3 [53.7 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-3.1 [334 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.29.4-2 [422 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-4 [111 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-2 [28.1 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.6-1 [189 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-3 [46.0 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-2 [16.0 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-2 [177 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.1 [208 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-6 [1072 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.1-1 [1030 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.10-1 [52.7 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-5 [138 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-5 [1980 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.3-1 [4920 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.2-4 [1126 B]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2.20110419-2 [278 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-2 [287 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.6-1 [33.6 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8d-1 [260 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.1-1 [2200 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.1-1 [2374 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armel 5.9-4 [90.5 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-4 [388 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-4 [301 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.6.dfsg-2 [209 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.47-1 [261 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-8 [238 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-8 [890 B]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-4 [329 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-5 [190 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.11-1 [1565 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.11-1 [1129 kB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.14.2-1 [20.1 MB]
+Get:85 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 67.0 MB in 7s (9201 kB/s)
-(Reading database ... 10465 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-16 (using .../libgomp1_4.6.2-1_armel.deb) ...
+Fetched 68.6 MB in 10s (6254 kB/s)
+(Reading database ... 10578 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.2-12 (using .../libgomp1_4.6.3-1_armel.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-16 (using .../gcc-4.6-base_4.6.2-1_armel.deb) ...
+Preparing to replace gcc-4.6-base 4.6.2-12 (using .../gcc-4.6-base_4.6.3-1_armel.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.2-1) ...
-(Reading database ... 10466 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-16 (using .../libgcc1_1%3a4.6.2-1_armel.deb) ...
+Setting up gcc-4.6-base (4.6.3-1) ...
+(Reading database ... 10579 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.2-12 (using .../libgcc1_1%3a4.6.3-1_armel.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.2-1) ...
-(Reading database ... 10466 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-16 (using .../cpp-4.6_4.6.2-1_armel.deb) ...
+Setting up libgcc1 (1:4.6.3-1) ...
+(Reading database ... 10579 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.2-12 (using .../cpp-4.6_4.6.3-1_armel.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-16 (using .../libstdc++6-4.6-dev_4.6.2-1_armel.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.2-12 (using .../libstdc++6-4.6-dev_4.6.3-1_armel.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-16 (using .../g++-4.6_4.6.2-1_armel.deb) ...
+Preparing to replace g++-4.6 4.6.2-12 (using .../g++-4.6_4.6.3-1_armel.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-16 (using .../gcc-4.6_4.6.2-1_armel.deb) ...
+Preparing to replace gcc-4.6 4.6.2-12 (using .../gcc-4.6_4.6.3-1_armel.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-16 (using .../libstdc++6_4.6.2-1_armel.deb) ...
+Preparing to replace libstdc++6 4.6.2-12 (using .../libstdc++6_4.6.3-1_armel.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.2-1) ...
+Setting up libstdc++6 (4.6.3-1) ...
+(Reading database ... 10579 files and directories currently installed.)
+Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_armel.deb) ...
+Unpacking replacement zlib1g ...
+Setting up zlib1g (1:1.2.6.dfsg-2) ...
Selecting previously unselected package libpipeline1.
-(Reading database ... 10466 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_armel.deb) ...
+(Reading database ... 10579 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_armel.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_armel.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_armel.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_armel.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_armel.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_armel.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_armel.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_armel.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_armel.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_armel.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_armel.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-1_armel.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armel.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_armel.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_armel.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_armel.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_armel.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_armel.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_armel.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4+b1_armel.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_armel.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_armel.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_armel.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_armel.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_armel.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_armel.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_armel.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_armel.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_armel.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_armel.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_armel.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_armel.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_armel.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_armel.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_armel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_armel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_armel.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_armel.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_armel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armel.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_armel.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_armel.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_armel.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_armel.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_armel.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_armel.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_armel.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_armel.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_armel.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_armel.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_armel.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_armel.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_armel.deb) ...
Selecting previously unselected package libxext6.
@@ -393,19 +406,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_armel.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_armel.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armel.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armel.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_armel.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_armel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_armel.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_armel.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_armel.deb) ...
+Unpacking file (from .../archives/file_5.10-1_armel.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_armel.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
Selecting previously unselected package gettext.
@@ -413,31 +424,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_armel.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-1_armel.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_armel.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_armel.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_armel.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_armel.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_armel.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_armel.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_armel.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_armel.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_armel.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_armel.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_armel.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_armel.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_armel.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_armel.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_armel.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armel.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -445,137 +456,137 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_armel.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_armel.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armel.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_armel.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_armel.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_armel.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_armel.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_armel.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_armel.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_armel.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_armel.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_armel.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_armel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_armel.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_armel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_armel.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_armel.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_armel.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libgomp1 (4.6.2-1) ...
-Setting up cpp-4.6 (4.6.2-1) ...
-Setting up gcc-4.6 (4.6.2-1) ...
-Setting up libpipeline1 (1.2.0-4) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libgomp1 (4.6.3-1) ...
+Setting up cpp-4.6 (4.6.3-1) ...
+Setting up gcc-4.6 (4.6.3-1) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-1) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4+b1) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-1) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
-Setting up libstdc++6-4.6-dev (4.6.2-1) ...
-Setting up g++-4.6 (4.6.2-1) ...
+Setting up r-base-dev (2.14.2-1) ...
+Setting up libstdc++6-4.6-dev (4.6.3-1) ...
+Setting up g++-4.6 (4.6.3-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-1 gcc-4.6_4.6.2-1 libc6-dev_2.13-21 libstdc++6_4.6.2-1 libstdc++6-4.6-dev_4.6.2-1 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-1 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-1 gcc-4.6-base_4.6.2-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-1 libgdbm3_1.8.3-10 libgfortran3_4.6.2-1 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-1 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-1 libstdc++6-4.6-dev_4.6.2-1 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-26 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.2-1
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6_2.13-26 libc6-dev_2.13-26 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.3+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4+b1 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.2-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -586,12 +597,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -601,8 +612,8 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture armel
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -610,9 +621,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -623,6 +634,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -633,47 +657,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `update-config'.
fakeroot debian/rules binary-arch
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -685,18 +715,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -704,12 +736,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -718,67 +755,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../r-bioc-limma_3.10.0-1_armel.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org> >../r-bioc-limma_3.10.3-1_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0605
+Build finished at 20120307-0504
-r-bioc-limma_3.10.0-1_armel.changes:
+r-bioc-limma_3.10.3-1_armel.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: armel
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
-Maintainer: armel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org>
+Maintainer: armel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- b256013dd52001f2d1965c1ce88024c9aa71affb 1472170 r-bioc-limma_3.10.0-1_armel.deb
+ e18ed17f3ffc257ad73bd046fe6839e026b68839 1475510 r-bioc-limma_3.10.3-1_armel.deb
Checksums-Sha256:
- b9c9eda40a551258c90b9a04c89eb70a5cba8061bee909abfd64c9a587d14ff7 1472170 r-bioc-limma_3.10.0-1_armel.deb
+ 4a9a9b6f5865d03cd9e5031e441e5ec6a476ba694321e4830315b3548a8413db 1475510 r-bioc-limma_3.10.3-1_armel.deb
Files:
- 592561e1e8c0a24f33b8f19c399d34f4 1472170 gnu-r optional r-bioc-limma_3.10.0-1_armel.deb
+ c1f24da2f95162f799a1bad9f23c1aa2 1475510 gnu-r optional r-bioc-limma_3.10.3-1_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_armel.deb
+r-bioc-limma_3.10.3-1_armel.deb
───────────────────────────────
new debian package, version 2.0.
- size 1472170 bytes: control archive= 1538 bytes.
- 768 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1475510 bytes: control archive= 1574 bytes.
+ 769 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1677
- Depends: libc6 (>= 2.4), r-base-core (>= 2.14.0~)
+ Installed-Size: 1684
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -790,51 +862,52 @@ r-bioc-limma_3.10.0-1_armel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/
--rwxr-xr-x root/root 1230 2011-11-04 06:04 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-11-04 06:05 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 13848 2011-11-04 06:05 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 972 2011-11-04 06:04 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1901 2011-11-04 06:04 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2392 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3257 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 455445 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1351 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6221 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/AnIndex
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 87742 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 737661 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 42743 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 673 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/index.html
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3785 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 197382 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/limma.rdb
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-11-04 06:04 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-04 06:04 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 216 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5603 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 1056 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 518 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 6023 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 2886 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1984 2011-11-04 06:04 ./usr/lib/R/site-library/limma/NEWS.Rd
--rw-r--r-- root/root 9458 2011-11-04 06:04 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 06:05 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 329 2011-11-04 06:03 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2118 2011-11-04 06:03 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 05:02 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2302 2012-03-07 05:02 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 264 2012-03-07 05:02 ./usr/share/doc/r-bioc-limma/README.Debian
+drwxr-xr-x root/root 0 2012-03-07 05:03 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 05:03 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2012-03-07 05:03 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1350 2012-03-07 05:03 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3275 2012-03-07 05:03 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2012-03-07 05:03 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2012-03-07 05:03 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 458368 2012-03-07 05:03 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 972 2012-03-07 05:03 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 9458 2012-03-07 05:04 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 05:03 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2012-03-07 05:03 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-07 05:03 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 6022 2012-03-07 05:04 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1057 2012-03-07 05:03 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 2886 2012-03-07 05:04 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5603 2012-03-07 05:04 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 216 2012-03-07 05:04 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 05:04 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 2173 2012-03-07 05:03 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2012-03-07 05:03 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 737677 2012-03-07 05:03 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 89361 2012-03-07 05:03 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2012-03-07 05:03 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2012-03-07 05:03 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 1230 2012-03-07 05:03 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 05:03 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 05:03 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3773 2012-03-07 05:03 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 198253 2012-03-07 05:03 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1901 2012-03-07 05:03 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2012-03-07 05:04 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 13840 2012-03-07 05:04 ./usr/lib/R/site-library/limma/libs/limma.so
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -848,7 +921,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armel-sbuild-1aa1d36d-d6e7-4c69-bde2-b20921a5c637/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX
+Purging /var/lib/schroot/mount/sid-armel-sbuild-68554738-7175-4eea-a183-437c7cca274b/build/buildd-r-bioc-limma_3.10.3-1-armel-au2iZF
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -856,19 +929,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armel
-Build-Space: 5312
-Build-Time: 117
+Build-Space: 5340
+Build-Time: 116
Distribution: sid
-Install-Time: 293
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 307
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 506
-Source-Version: 3.10.0-1
-Space: 5312
+Package-Time: 555
+Source-Version: 3.10.3-1
+Space: 5340
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0605
-Build needed 00:08:26, 5312k disc space
-Signature with key '8EF8A95A' requested:
+Finished at 20120307-0504
+Build needed 00:09:15, 5340k disc space
+Signature with key '6ED1FB5A' requested:
diff --git a/armhf.log b/armhf.log
index 417a512..45d1625 100644
--- a/armhf.log
+++ b/armhf.log
@@ -1,67 +1,69 @@
-From buildd at hasse.debian.org Tue Dec 27 06:57:38 2011
-Return-path: <buildd at hasse.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at hoiby.debian.org Wed Mar 07 06:12:39 2012
+Return-path: <buildd at hoiby.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at hasse.debian.org>)
- id 1RfQyg-0003lN-NC
- for logs at buildd.debian.org; Tue, 27 Dec 2011 06:57:38 +0000
-Received: from [217.140.96.68] (helo=hasse.debian.org)
+ (Exim 4.72) (envelope-from <buildd at hoiby.debian.org>)
+ id 1S5A75-0000bz-34
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:12:39 +0000
+Received: from [217.140.96.71] (helo=hoiby.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=hasse.debian.org, EMAIL=hostmaster at hasse.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at hasse.debian.org>)
- id 1RfQyf-0003dO-MA
- for logs at buildd.debian.org; Tue, 27 Dec 2011 06:57:37 +0000
-Received: from buildd by hasse.debian.org with local (Exim 4.77)
- (envelope-from <buildd at hasse.debian.org>)
- id 1RfQyM-0003Fy-MW; Tue, 27 Dec 2011 06:57:18 +0000
-From: buildd on hasse <buildd at hasse.debian.org>
-To: logs at buildd.debian.org,buildd-porters at hasse.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on armhf (dist=sid)
+ CN=hoiby.debian.org, EMAIL=hostmaster at hoiby.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at hoiby.debian.org>)
+ id 1S5A73-0002QH-M7
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:12:37 +0000
+Received: from buildd by hoiby.debian.org with local (Exim 4.77)
+ (envelope-from <buildd at hoiby.debian.org>)
+ id 1S5A6y-0003rb-Oi; Wed, 07 Mar 2012 06:12:32 +0000
+From: buildd on hoiby <buildd at hoiby.debian.org>
+To: logs at buildd.debian.org,buildd-porters at hoiby.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on armhf (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1RfQyM-0003Fy-MW at hasse.debian.org>
-Date: Tue, 27 Dec 2011 06:57:18 +0000
+Message-Id: <E1S5A6y-0003rb-Oi at hoiby.debian.org>
+Date: Wed, 07 Mar 2012 06:12:32 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on hasse.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on hoiby.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (armhf) 27 des 2011 06:49 ║
+║ r-bioc-limma 3.10.3-1 (armhf) 07 Mar 2012 06:06 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: armhf
-Get:1 http://incoming.debian.org unstable InRelease [189 kB]
-Get:2 http://ftp.uk.debian.org unstable InRelease [189 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [5952 kB]
+Get:1 http://ftp.uk.debian.org unstable InRelease [197 kB]
+Get:2 http://incoming.debian.org unstable InRelease [197 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [6231 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5952 kB]
-Get:6 http://incoming.debian.org unstable/contrib Sources [54.8 kB]
-Get:7 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:8 http://incoming.debian.org unstable/main armhf Packages [6986 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib Sources [54.8 kB]
-Get:10 http://ftp.uk.debian.org unstable/non-free Sources [101 kB]
-Get:11 http://ftp.uk.debian.org unstable/main armhf Packages [6986 kB]
-Get:12 http://incoming.debian.org unstable/contrib armhf Packages [39.0 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:6 http://ftp.uk.debian.org unstable/contrib Sources [55.0 kB]
+Get:7 http://ftp.uk.debian.org unstable/non-free Sources [98.8 kB]
+Get:8 http://ftp.uk.debian.org unstable/main armhf Packages [5628 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:11 http://incoming.debian.org unstable/main armhf Packages [5628 kB]
+Get:12 http://ftp.uk.debian.org unstable/contrib armhf Packages [35.7 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:13 http://ftp.uk.debian.org unstable/main TranslationIndex [2154 B]
+Get:14 http://ftp.uk.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:15 http://ftp.uk.debian.org unstable/main Translation-en [3906 kB]
+Get:16 http://incoming.debian.org unstable/contrib armhf Packages [35.7 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:13 http://incoming.debian.org unstable/main TranslationIndex [2085 B]
-Get:14 http://incoming.debian.org Release [1616 B]
-Get:15 http://incoming.debian.org Sources [44.2 kB]
-Get:16 http://incoming.debian.org Packages [426 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:17 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:18 http://incoming.debian.org Release [1616 B]
+Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:20 http://incoming.debian.org unstable/main Translation-en [3906 kB]
+Get:21 http://incoming.debian.org Sources [61.6 kB]
+Get:22 http://incoming.debian.org Packages [883 kB]
Ign http://incoming.debian.org Translation-en
-Get:17 http://ftp.uk.debian.org unstable/contrib armhf Packages [39.0 kB]
-Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:18 http://ftp.uk.debian.org unstable/main TranslationIndex [2085 B]
-Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Fetched 27.1 MB in 1min 16s (355 kB/s)
+Fetched 33.3 MB in 1min 18s (426 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,11 +84,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (858 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (842 kB/s)
Download complete and in download only mode
Check arch
@@ -99,37 +101,37 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
+build-essential: already installed (11.5+b1)
fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-24)
-gcc: already installed (4:4.6.2-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-2 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
+libc6-dev: already installed (2.13-27)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1+b1)
dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.13
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.1-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -146,7 +148,7 @@ The following extra packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
@@ -173,352 +175,347 @@ The following NEW packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded.
-Need to get 52.9 MB of archives.
-After this operation, 102 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.0-5+b1 [32.4 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 8.12-4 [222 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.30.2-4 [1672 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.7.8.dfsg-5 [775 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.2-2+b1 [104 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armhf 0.2.5-3 [25.4 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.0.1-7.2+b1 [106 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armhf 2.4.8-1+b1 [371 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armhf 2.8.0-3+b1 [264 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armhf 4.6.2-9 [223 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+10 [281 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libice6 armhf 2:1.0.7-2 [47.5 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armhf 0.24.0-1 [384 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armhf 1.2.46-3+b1 [174 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armhf 1:1.0.6-4 [15.8 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armhf 1:1.1.0-4 [21.2 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armhf 1.7-4 [38.3 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armhf 2:1.4.4-4 [805 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armhf 1.7-4 [15.2 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armhf 1.7-4 [9368 B]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armhf 1:0.9.6-2 [27.4 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armhf 1.10.2-6.2 [881 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.16-3 [203 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armhf 0.1.16-3 [40.8 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armhf 2.2.0-3 [50.8 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armhf 2.8.0-3+b1 [333 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armhf 1.29.4-2 [396 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armhf 8.12-4 [110 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armhf 2:1.2.0-2 [27.1 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armhf 8c-2+b1 [121 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armhf 3.9.5-2+b1 [176 kB]
+0 upgraded, 76 newly installed, 0 to remove and 11 not upgraded.
+Need to get 53.0 MB of archives.
+After this operation, 100 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.1-1 [33.2 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.10-1 [246 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 8.12-4+b1 [222 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.0.1-7.2+b1 [106 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armhf 2.4.8-1+b1 [371 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armhf 2.8.0-3.1 [264 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armhf 0.24.4-1 [387 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armhf 1.2.47-1 [176 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armhf 1:1.0.6-4+b1 [15.9 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armhf 1:1.1.0-4+b1 [21.3 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armhf 1.8-2 [41.4 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armhf 2:1.4.4-4+b1 [806 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armhf 1.8-2 [16.4 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armhf 1.8-2 [9730 B]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armhf 1:0.9.6-2+b1 [27.6 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armhf 1.10.2-7 [882 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.30.2-6 [1673 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.7.8.dfsg-7 [779 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.4-2 [134 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armhf 0.2.5-3 [25.4 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armhf 4.6.3-1 [222 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libice6 armhf 2:1.0.7-2+b1 [47.6 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armhf 8d-1 [121 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armhf 0.1.17-1 [41.2 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armhf 2.2.0-3+b1 [50.5 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armhf 2.8.0-3.1 [333 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armhf 1.29.4-2+b1 [396 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armhf 8.12-4+b1 [110 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armhf 2:1.2.0-2+b1 [27.3 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armhf 3.9.6-1 [178 kB]
Get:37 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armhf 2:1.3.0-3 [45.2 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armhf 2:1.3.0-3+b1 [45.1 kB]
Get:39 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armhf 1:1.2.1-2 [15.6 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armhf 1:1.1.1-2 [166 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 8.2.3 [201 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-6 [1029 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.0.2-3 [976 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.09-2 [244 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.09-2 [51.6 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-5 [131 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.100 [77.1 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15 [97.2 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-5 [1925 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.13 [694 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.34 [95.1 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armhf 4.6.2-9 [4601 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main gfortran armhf 4:4.6.2-2 [1124 B]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armhf 1.2.20110419-2 [189 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armhf 1.2.20110419-2 [192 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armhf 1.0.6-1 [31.8 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armhf 8c-2+b1 [225 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armhf 3.3.1-1 [3279 kB]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armhf 3.3.1-1 [3531 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armhf 5.9-4 [84.0 kB]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armhf 5.9-4 [376 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armhf 1.1.24+nmu1 [20.6 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armhf 1.1.24+nmu1 [17.7 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armhf 8.12-4 [298 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.3.4.dfsg-3 [200 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armhf 1.2.46-3+b1 [254 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armhf 6.2-8 [230 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armhf 6.2-8 [896 B]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main zip armhf 3.0-4 [315 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main unzip armhf 6.0-5 [182 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-3 [83.2 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armhf 8.5.11-1 [1532 kB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armhf 8.5.11-1 [1074 kB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armhf 2.14.1-1 [19.8 MB]
-Get:77 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.14.1-1 [3556 B]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armhf 1:1.1.1-2+b1 [167 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.1 [203 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-6+b1 [1027 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.1-1 [1009 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.10-1 [52.4 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-5+b1 [132 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-5+b1 [1920 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armhf 4.6.3-1 [4606 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main gfortran armhf 4:4.6.2-4 [1122 B]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armhf 1.2.20110419-2+b1 [190 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armhf 1.2.20110419-2+b1 [193 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armhf 1.0.6-1 [31.8 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armhf 8d-1 [226 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armhf 3.3.1-1 [3279 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armhf 3.3.1-1 [3531 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armhf 5.9-4+b1 [84.0 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armhf 5.9-4+b1 [374 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armhf 1.1.24+nmu1+b1 [20.7 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armhf 1.1.24+nmu1+b1 [17.8 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armhf 8.12-4+b1 [299 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.6.dfsg-2 [206 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armhf 1.2.47-1 [256 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armhf 6.2-8+b1 [229 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armhf 6.2-8+b1 [898 B]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main zip armhf 3.0-4+b1 [316 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main unzip armhf 6.0-5+b1 [182 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armhf 8.5.11-1 [1532 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armhf 8.5.11-1 [1074 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armhf 2.14.2-1 [19.9 MB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 52.9 MB in 9s (5543 kB/s)
+Fetched 53.0 MB in 9s (5375 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 12689 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5+b1_armhf.deb) ...
+(Reading database ... 10762 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_armhf.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_armhf.deb) ...
Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-4_armhf.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_armhf.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_armhf.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_armhf.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2+b1_armhf.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_armhf.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-4+b1_armhf.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2+b1_armhf.deb) ...
Selecting previously unselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1+b1_armhf.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3+b1_armhf.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-9_armhf.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+10_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armhf.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_armhf.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.0-1_armhf.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_armhf.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3+b1_armhf.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_armhf.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_armhf.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4+b1_armhf.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_armhf.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4+b1_armhf.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-4_armhf.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_armhf.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_armhf.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4+b1_armhf.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-4_armhf.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_armhf.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-4_armhf.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_armhf.deb) ...
Selecting previously unselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_armhf.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2+b1_armhf.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.2_armhf.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_armhf.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_armhf.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_armhf.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_armhf.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_armhf.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_armhf.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_armhf.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2+b1_armhf.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_armhf.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.16-3_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.16-3_armhf.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_armhf.deb) ...
Selecting previously unselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-3_armhf.deb) ...
+Unpacking libxft2 (from .../libxft2_2.2.0-3+b1_armhf.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3+b1_armhf.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_armhf.deb) ...
Selecting previously unselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_armhf.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2+b1_armhf.deb) ...
Selecting previously unselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_armhf.deb) ...
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4+b1_armhf.deb) ...
Selecting previously unselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_armhf.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2+b1_armhf.deb) ...
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2+b1_armhf.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2+b1_armhf.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_armhf.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5+b1_armhf.deb) ...
Selecting previously unselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_armhf.deb) ...
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3+b1_armhf.deb) ...
Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_armhf.deb) ...
Selecting previously unselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_armhf.deb) ...
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2+b1_armhf.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armhf.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ...
Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-6_armhf.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6+b1_armhf.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-3_armhf.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_armhf.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_armhf.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_armhf.deb) ...
+Unpacking file (from .../archives/file_5.10-1_armhf.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_armhf.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+b1_armhf.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_armhf.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_armhf.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-5+b1_armhf.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.13_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.34_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-9_armhf.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_armhf.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.2-2_armhf.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_armhf.deb) ...
Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_armhf.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2+b1_armhf.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_armhf.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2+b1_armhf.deb) ...
Selecting previously unselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_armhf.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2+b1_armhf.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_armhf.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_armhf.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_armhf.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_armhf.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4+b1_armhf.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_armhf.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4+b1_armhf.deb) ...
Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armhf.deb) ...
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1+b1_armhf.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_armhf.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1+b1_armhf.deb) ...
Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_armhf.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4+b1_armhf.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armhf.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_armhf.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3+b1_armhf.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_armhf.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_armhf.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8+b1_armhf.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_armhf.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8+b1_armhf.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-4_armhf.deb) ...
+Unpacking zip (from .../zip_3.0-4+b1_armhf.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-5_armhf.deb) ...
+Unpacking unzip (from .../unzip_6.0-5+b1_armhf.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-3_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_armhf.deb) ...
Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.11-1_armhf.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.1-1_armhf.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_armhf.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-5+b1) ...
-Setting up libpcre3 (8.12-4) ...
-Setting up libffi5 (3.0.10-3+b1) ...
-Setting up libglib2.0-0 (2.30.2-4) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2+b1) ...
-Setting up libdatrie1 (0.2.5-3) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
+Setting up libpcre3 (8.12-4+b1) ...
Setting up libexpat1 (2.0.1-7.2+b1) ...
Setting up libfreetype6 (2.4.8-1+b1) ...
-Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3+b1) ...
-Setting up libgfortran3 (4.6.2-9) ...
-Setting up x11-common (1:7.6+10) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4+b1) ...
+Setting up libxdmcp6 (1:1.1.0-4+b1) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4+b1) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2+b1) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3+b1) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.24.0-1) ...
-Setting up libpng12-0 (1.2.46-3+b1) ...
-Setting up libxau6 (1:1.0.6-4) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.7-4) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.7-4) ...
-Setting up libxcb-shm0 (1.7-4) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.2) ...
-Setting up libthai-data (0.1.16-3) ...
-Setting up libthai0 (0.1.16-3) ...
-Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3+b1) ...
+Setting up libice6 (2:1.0.7-2+b1) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
+Setting up libxft2 (2.2.0-3+b1) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.29.4-2) ...
-Setting up libpcrecpp0 (8.12-4) ...
-Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2+b1) ...
-Setting up libtiff4 (3.9.5-2+b1) ...
+Setting up libpango1.0-0 (1.29.4-2+b1) ...
+Setting up libpcrecpp0 (8.12-4+b1) ...
+Setting up libsm6 (2:1.2.0-2+b1) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5+b1) ...
-Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxext6 (2:1.3.0-3+b1) ...
Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up libxt6 (1:1.1.1-2+b1) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-3) ...
+Setting up groff-base (1.21-6+b1) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.100) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up file (5.10-1) ...
+Setting up gettext-base (0.18.1.1-5+b1) ...
+Setting up cdbs (0.4.105) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up gettext (0.18.1.1-5+b1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.13) ...
-Setting up dpatch (2.0.34) ...
-Setting up gfortran-4.6 (4.6.2-9) ...
-Setting up gfortran (4:4.6.2-2) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
+Setting up libblas3gf (1.2.20110419-2+b1) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
+Setting up libblas-dev (1.2.20110419-2+b1) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8c-2+b1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-4) ...
-Setting up libncurses5-dev (5.9-4) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
+Setting up libtinfo-dev (5.9-4+b1) ...
+Setting up libncurses5-dev (5.9-4+b1) ...
+Setting up libpaper1 (1.1.24+nmu1+b1) ...
Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3+b1) ...
-Setting up libreadline6-dev (6.2-8) ...
-Setting up libreadline-dev (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-3) ...
+Setting up libpaper-utils (1.1.24+nmu1+b1) ...
+Setting up libpcre3-dev (8.12-4+b1) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8+b1) ...
+Setting up libreadline-dev (6.2-8+b1) ...
+Setting up zip (3.0-4+b1) ...
+Setting up unzip (6.0-5+b1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.1-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.1-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.35.3 armhf (armv7l)
-Toolchain package versions: binutils_2.22-2 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.6-1
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.100 coreutils_8.13-3 cpp_4:4.6.2-2 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.13 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.1 diffutils_1:3.2-1 dpatch_2.0.34 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3+b1 fontconfig-config_2.8.0-3 g++_4:4.6.2-2 g++-4.6_4.6.2-9 gcc_4:4.6.2-2 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-10 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-2 gfortran-4.6_4.6.2-9 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.08 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libalgorithm-diff-perl_1.19.02-2 libalgorithm-merge-perl_0.08-2 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libcairo2_1.10.2-6.2 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2+b1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2+b1 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3+b1 libfreetype6_2.4.8-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.2-9 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2+b1 libgomp1_4.6.2-9 libice6_2:1.0.7-2 libjpeg8_8c-2+b1 libjpeg8-dev_8c-2+b1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-5+b1 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3+b1 libpng12-dev_1.2.46-3+b1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libthai-data_0.1.16-3 libthai0_0.1.16-3 libtiff4_3.9.5-2+b1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-19+b1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4 libxcb-shm0_1.7-4 libxcb1_1.7-4 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.6-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 manpages_3.35-0.1 manpages-dev_3.35-0.1 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.1-1 r-base-dev_2.14.1-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-2 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-3 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+10 xdg-utils_1.1.0~rc1+git20111210-3 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 3.2.0-1-mx5 armhf (armv7l)
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.7-1
+Package versions: apt_0.8.15.9+b1 base-files_6.5+b1 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3+b1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1+b1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1+b1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6+b1 gzip_1.4-2+b1 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2+b1 libblas3gf_1.2.20110419-2+b1 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2+b1 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1+b1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2+b1 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-3+b1 libncurses5_5.9-4+b1 libncurses5-dev_5.9-4+b1 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2+b1 libpaper-utils_1.1.24+nmu1+b1 libpaper1_1.1.24+nmu1+b1 libpcre3_8.12-4+b1 libpcre3-dev_8.12-4+b1 libpcrecpp0_8.12-4+b1 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2+b1 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4+b1 libtinfo5_5.9-4+b1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4+b1 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4+b1 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4+b1 libxext6_2:1.3.0-3+b1 libxft2_2.2.0-3+b1 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2+b1 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2+b1 linux-libc-dev_3.2.7-1 login_1:4.1.5-1 lsb-base_3.2+Debian29 make_3.81-8.1+b1 man-db_2.6.1-1 mawk_1.3.3-16+b1 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4+b1 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5+b1 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4+b1 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -529,12 +526,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -544,8 +541,8 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -553,9 +550,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -566,6 +563,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -577,9 +587,9 @@ test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -587,36 +597,42 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -628,18 +644,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -647,12 +665,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -661,67 +684,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_armhf.deb'.
- dpkg-genchanges -B -marmhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org> >../r-bioc-limma_3.10.0-1_armhf.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_armhf.deb'.
+ dpkg-genchanges -B -marmhf Build Daemon (hoiby) <buildd_armhf-hoiby at buildd.debian.org> >../r-bioc-limma_3.10.3-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111227-0657
+Build finished at 20120307-0612
-r-bioc-limma_3.10.0-1_armhf.changes:
+r-bioc-limma_3.10.3-1_armhf.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: armhf
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
-Maintainer: armhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org>
+Maintainer: armhf Build Daemon (hoiby) <buildd_armhf-hoiby at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 14edda97e6874beb8ea43c6e9f1ec799fcd55d93 1469236 r-bioc-limma_3.10.0-1_armhf.deb
+ eead82135c0373743a1497f41b8096e8aa03f97c 1474990 r-bioc-limma_3.10.3-1_armhf.deb
Checksums-Sha256:
- 7c9723b2d6e89bf5893bc7171cf3a3a57e8f967e4a98080d76c2815b8ed53738 1469236 r-bioc-limma_3.10.0-1_armhf.deb
+ 1449b90712fe6a4e3b9482c76833c1c97c05f4f4b2a6bc0de1c3518c55fcf541 1474990 r-bioc-limma_3.10.3-1_armhf.deb
Files:
- 0ef21a6f45358b45b5eb643c4b0a9978 1469236 gnu-r optional r-bioc-limma_3.10.0-1_armhf.deb
+ 539584b6171f07715469956776127329 1474990 gnu-r optional r-bioc-limma_3.10.3-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_armhf.deb
+r-bioc-limma_3.10.3-1_armhf.deb
───────────────────────────────
new debian package, version 2.0.
- size 1469236 bytes: control archive= 1540 bytes.
- 768 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1474990 bytes: control archive= 1569 bytes.
+ 769 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1671
- Depends: libc6 (>= 2.4), r-base-core (>= 2.14.1~)
+ Installed-Size: 1677
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -733,51 +791,52 @@ r-bioc-limma_3.10.0-1_armhf.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/share/
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-12-27 06:57 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 329 2011-12-27 06:55 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2118 2011-12-27 06:55 ./usr/share/doc/r-bioc-limma/copyright
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 737661 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 87742 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 1901 2011-12-27 06:56 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1984 2011-12-27 06:56 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 455979 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3287 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2394 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1353 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6221 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/AnIndex
-drwxr-xr-x root/root 0 2011-12-27 06:57 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 6688 2011-12-27 06:57 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 519 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 6024 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 1067 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5604 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2889 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/vignette.rds
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 197851 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3790 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 383 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-12-27 06:56 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-12-27 06:56 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9458 2011-12-27 06:56 ./usr/lib/R/site-library/limma/INDEX
--rw-r--r-- root/root 974 2011-12-27 06:56 ./usr/lib/R/site-library/limma/DESCRIPTION
--rwxr-xr-x root/root 1230 2011-12-27 06:56 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 06:12 ./
+drwxr-xr-x root/root 0 2012-03-07 06:12 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 06:12 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 06:12 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 06:12 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 06:10 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 560 2012-03-07 06:10 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2302 2012-03-07 06:10 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 06:12 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2012-03-07 06:11 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 2173 2012-03-07 06:11 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 9458 2012-03-07 06:11 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2012-03-07 06:11 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-07 06:11 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 974 2012-03-07 06:11 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-03-07 06:12 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 6688 2012-03-07 06:12 ./usr/lib/R/site-library/limma/libs/limma.so
+-rwxr-xr-x root/root 1230 2012-03-07 06:11 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3774 2012-03-07 06:11 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 383 2012-03-07 06:11 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198254 2012-03-07 06:11 ./usr/lib/R/site-library/limma/R/limma.rdb
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2012-03-07 06:11 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 89361 2012-03-07 06:11 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 42743 2012-03-07 06:11 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737677 2012-03-07 06:11 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1711 2012-03-07 06:11 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 2886 2012-03-07 06:11 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 6022 2012-03-07 06:11 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2012-03-07 06:11 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 1062 2012-03-07 06:11 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 216 2012-03-07 06:11 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 06:11 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2012-03-07 06:11 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6221 2012-03-07 06:11 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2012-03-07 06:11 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3270 2012-03-07 06:11 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 458790 2012-03-07 06:11 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1352 2012-03-07 06:11 ./usr/lib/R/site-library/limma/help/paths.rds
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -791,7 +850,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armhf-sbuild-1fe2c8c8-2dee-4b28-bd68-c37792fb0707/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P
+Purging /var/lib/schroot/mount/sid-armhf-sbuild-cec436ce-43f0-4c3c-8e5f-e89287d8efa2/build/buildd-r-bioc-limma_3.10.3-1-armhf-fC6Q0x
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -799,19 +858,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armhf
-Build-Space: 5272
-Build-Time: 101
+Build-Space: 5336
+Build-Time: 104
Distribution: sid
-Install-Time: 251
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 154
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 461
-Source-Version: 3.10.0-1
-Space: 5272
+Package-Time: 366
+Source-Version: 3.10.3-1
+Space: 5336
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111227-0657
-Build needed 00:07:41, 5272k disc space
-Signature with key '89094F85' requested:
+Finished at 20120307-0612
+Build needed 00:06:06, 5336k disc space
+Signature with key 'AC057EAC' requested:
diff --git a/hurd-i386.log b/hurd-i386.log
index ead1566..47ab7cf 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,83 +1,60 @@
-From buildd at bach.debian.net Fri Nov 04 06:18:29 2011
-Return-path: <buildd at bach.debian.net>
+From buildd at mozart.debian.net Wed Mar 07 06:54:41 2012
+Return-path: <buildd at mozart.debian.net>
Received: from callisto.debian.net ([80.87.129.151])
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at bach.debian.net>)
- id 1RMD6i-00042w-9e
- for logs at buildd.debian.org; Fri, 04 Nov 2011 06:18:29 +0000
-Received: from bach.debian.net ([10.3.0.1])
- by callisto.debian.net with esmtp (Exim 4.69)
- (envelope-from <buildd at bach.debian.net>)
- id 1RMD6c-00008s-FA; Fri, 04 Nov 2011 06:18:22 +0000
-Received: from buildd by bach.debian.net with local (Exim 4.72)
- (envelope-from <buildd at bach.debian.net>)
- id 1RMD6d-0000GS-Ax; Fri, 04 Nov 2011 06:18:23 +0000
-Date: Fri, 04 Nov 2011 06:18:23 +0000
-Message-Id: <E1RMD6d-0000GS-Ax at bach.debian.net>
-From: Build Daemon <buildd at bach.debian.net>
+ (Exim 4.72) (envelope-from <buildd at mozart.debian.net>)
+ id 1S5Alj-0006yb-Bk
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:54:40 +0000
+Received: from mozart.debian.net ([10.1.0.1])
+ by callisto.debian.net with esmtp (Exim 4.72)
+ (envelope-from <buildd at mozart.debian.net>)
+ id 1S5Alc-0007l0-QN; Wed, 07 Mar 2012 06:54:33 +0000
+Received: from buildd by mozart.debian.net with local (Exim 4.76)
+ (envelope-from <buildd at mozart.debian.net>)
+ id 1S5Alo-0003oz-GP; Wed, 07 Mar 2012 06:54:44 +0000
+From: Build Daemon <buildd at mozart.debian.net>
To: samuel.thibault at ens-lyon.org, mbanck at gmx.net, logs at buildd.debian-ports.org,
logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on hurd-i386
- (dist=unstable)
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on hurd-i386
+ (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
+Message-Id: <E1S5Alo-0003oz-GP at mozart.debian.net>
+Date: Wed, 07 Mar 2012 06:54:44 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on bach.debian.net
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mozart.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (hurd-i386) 04 nov. 2011 06:09 ║
+║ r-bioc-limma 3.10.3-1 (hurd-i386) 07 mars 2012 06:37 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: hurd-i386
-Hit http://ftp.uk.debian.org sid InRelease
Hit http://ftp.fr.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org Release.gpg
Ign http://ftp.debian-ports.org unreleased InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.uk.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex
-Hit http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex
-Ign http://ftp.uk.debian.org sid/contrib TranslationIndex
-Hit http://ftp.uk.debian.org sid/main TranslationIndex
-Ign http://ftp.uk.debian.org sid/non-free TranslationIndex
-Hit http://ftp.uk.debian.org sid/main Translation-fr
Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
Hit http://ftp.debian-ports.org unreleased Release.gpg
-Get:2 http://incoming.debian.org Release [1604 B]
+Hit http://incoming.debian.org Release
Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
-Hit http://ftp.fr.debian.org sid/non-free hurd-i386 Packages/DiffIndex
Ign http://ftp.fr.debian.org sid/contrib TranslationIndex
Hit http://ftp.fr.debian.org sid/main TranslationIndex
-Ign http://ftp.fr.debian.org sid/non-free TranslationIndex
Hit http://ftp.debian-ports.org unreleased Release
-Ign http://ftp.uk.debian.org sid/contrib Translation-en
-Ign http://ftp.uk.debian.org sid/contrib Translation-fr
-Ign http://ftp.uk.debian.org sid/non-free Translation-en
-Hit http://ftp.fr.debian.org sid/main Translation-fr
-Ign http://ftp.uk.debian.org sid/non-free Translation-fr
-Get:3 http://incoming.debian.org Sources [31.9 kB]
+Hit http://ftp.fr.debian.org sid/contrib Translation-en
+Hit http://ftp.fr.debian.org sid/main Translation-en
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
-Ign http://ftp.fr.debian.org sid/contrib Translation-en
-Ign http://ftp.fr.debian.org sid/contrib Translation-fr
-Get:4 http://incoming.debian.org Packages [571 kB]
-Ign http://ftp.fr.debian.org sid/non-free Translation-en
Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
-Ign http://ftp.fr.debian.org sid/non-free Translation-fr
-Ign http://ftp.debian-ports.org unreleased/main Translation-en
-Ign http://ftp.debian-ports.org unreleased/main Translation-fr
Ign http://incoming.debian.org Translation-en
-Ign http://incoming.debian.org Translation-fr
-Fetched 605 kB in 1min 39s (6106 B/s)
+Ign http://ftp.debian-ports.org unreleased/main Translation-en
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -98,11 +75,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 3s (269 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 27s (35.6 kB/s)
Download complete and in download only mode
Check arch
@@ -116,76 +93,79 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.18.1-1+hurd.1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a
+ libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
+ libboost-iostreams1.48.0 libsysfs2 libusb-0.1-4p
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 74 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a
+ libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
+ libboost-iostreams1.48.0 libsysfs2 libusb-0.1-4p
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 74 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3+hurd.1)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42.1-2)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.3.12-9)
hostname: already installed (3.06)
-hurd: already installed (20110519-3)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-4)
+hurd: already installed (20111206-1)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
sed: already installed (4.2.1-9)
-sysvinit-utils: already installed (2.88dsf-13.10)
-sysvinit: already installed (2.88dsf-13.10)
-tar: already installed (1.25-2)
-bsdutils: already installed (1:2.16.2-0)
-util-linux: already installed (2.16.2-0)
-libc0.3-dev: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-6 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-13.13)
+sysvinit: already installed (2.88dsf-13.13)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc0.3-dev: already installed (2.13-25)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
-hurd-dev: already installed (20110519-3)
-debhelper: already installed (8.9.8 >= 8 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+hurd-dev: already installed (20111206-1)
+debhelper: already installed (9.20120115 >= 8 is satisfied)
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a
+ libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
+ libboost-iostreams1.48.0 libsysfs2 libusb-0.1-4p
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
@@ -194,210 +174,209 @@ The following extra packages will be installed:
Suggested packages:
devscripts curl ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp ess r-doc-info
- r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
libxss1 libxt6 r-base-core r-base-dev tcl8.5 tk8.5 unzip x11-common
xdg-utils zip
-0 upgraded, 48 newly installed, 0 to remove and 68 not upgraded.
-Need to get 0 B/35.9 MB of archives.
-After this operation, 74.6 MB of additional disk space will be used.
+0 upgraded, 47 newly installed, 0 to remove and 74 not upgraded.
+Need to get 0 B/36.8 MB of archives.
+After this operation, 73.5 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
- liblzma5 libdatrie1 x11-common libice6 libpixman-1-0 libxau6 libxdmcp6
- libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1
- libcairo2 libthai-data libthai0 libxft2 libpango1.0-0 libpcrecpp0 libsm6
- libjpeg8 libtiff4 libxext6 libxss1 libxt6 cdbs dpatch libblas3gf libblas-dev
- libbz2-dev libjpeg8-dev liblapack3gf liblapack-dev libtinfo-dev
- libncurses5-dev libpaper1 libpaper-utils libpcre3-dev libpng12-dev
- libreadline6-dev libreadline-dev zip unzip xdg-utils tcl8.5 tk8.5
- r-base-core r-base-dev
-
-Extracting templates from packages: 62%
+ libpixman-1-0 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0
+ libxcb-shm0 libxrender1 libcairo2 libdatrie1 x11-common libice6 libjpeg8
+ libthai-data libthai0 libxft2 libpango1.0-0 libpcrecpp0 libsm6 libtiff4
+ libxext6 libxss1 libxt6 cdbs dpatch libblas3gf libblas-dev libbz2-dev
+ libjpeg8-dev liblapack3gf liblapack-dev libtinfo-dev libncurses5-dev
+ libpaper1 libpaper-utils libpcre3-dev libpng12-dev libreadline6-dev
+ libreadline-dev zip unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev
+
+Extracting templates from packages: 63%
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
-Selecting previously deselected package liblzma5.
-(Reading database ... 16885 files and directories currently installed.)
-Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_hurd-i386.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_hurd-i386.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_hurd-i386.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_hurd-i386.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_hurd-i386.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_hurd-i386.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_hurd-i386.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_hurd-i386.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_hurd-i386.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_hurd-i386.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libpixman-1-0.
+(Reading database ... 15856 files and directories currently installed.)
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_hurd-i386.deb) ...
+Selecting previously unselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_hurd-i386.deb) ...
+Selecting previously unselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_hurd-i386.deb) ...
+Selecting previously unselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.8-2_hurd-i386.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_hurd-i386.deb) ...
+Selecting previously unselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_hurd-i386.deb) ...
+Selecting previously unselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_hurd-i386.deb) ...
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_hurd-i386.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_hurd-i386.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2+b1_hurd-i386.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_hurd-i386.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_hurd-i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_hurd-i386.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_hurd-i386.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
+Selecting previously unselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.17-1_hurd-i386.deb) ...
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_hurd-i386.deb) ...
-Selecting previously deselected package libpango1.0-0.
+Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_hurd-i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_hurd-i386.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_hurd-i386.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_hurd-i386.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_hurd-i386.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_hurd-i386.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_hurd-i386.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_hurd-i386.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_hurd-i386.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_hurd-i386.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_hurd-i386.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_hurd-i386.deb) ...
-Selecting previously deselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_hurd-i386.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_hurd-i386.deb) ...
+Selecting previously unselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_hurd-i386.deb) ...
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_hurd-i386.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_hurd-i386.deb) ...
-Selecting previously deselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_hurd-i386.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_hurd-i386.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_hurd-i386.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_hurd-i386.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_hurd-i386.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_hurd-i386.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_hurd-i386.deb) ...
-Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_hurd-i386.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_hurd-i386.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_hurd-i386.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_hurd-i386.deb) ...
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_hurd-i386.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_hurd-i386.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../zip_3.0-4_hurd-i386.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_hurd-i386.deb) ...
-Selecting previously deselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_hurd-i386.deb) ...
-Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_hurd-i386.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_hurd-i386.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_hurd-i386.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_hurd-i386.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_hurd-i386.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
-Setting up liblzma5 (5.1.1alpha+20110809-3) ...
-Setting up libdatrie1 (0.2.4-3) ...
-Setting up x11-common (1:7.6+9) ...
-insserv: warning: script 'K01random-egd' missing LSB tags and overrides
-insserv: warning: script 'random-egd' missing LSB tags and overrides
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2+b1) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up cdbs (0.4.99) ...
-Setting up dpatch (2.0.33) ...
+Setting up cdbs (0.4.105) ...
+Setting up dpatch (2.0.35) ...
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a
+ libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
+ libboost-iostreams1.48.0 libsysfs2 libusb-0.1-4p
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 74 not upgraded.
Checking correctness of dependencies...
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: binutils_2.21.53.20110823-3+hurd.1 dpkg-dev_1.16.1 g++-4.5_4.5.3-8 g++-4.6_4.6.1-9+hurd.1 gcc-4.4_4.4.6-10 gcc-4.5_4.5.3-8 gcc-4.6_4.6.1-9+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20110519-3 libc0.3-dev_2.13-21 libstdc++6_4.6.1-9+hurd.1 libstdc++6-4.5-dev_4.5.3-8 libstdc++6-4.6-dev_4.6.1-9+hurd.1
-Package versions: adduser_3.113 apt_0.8.15.8 apt-utils_0.8.15.8 autopoint_0.18.1.1-4 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.53.20110823-3+hurd.1 bsd-mailx_8.1.2-0.20100314cvs-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-7 ca-certificates_20110502+nmu1 cdbs_0.4.99 coreutils_8.5-1 cpp_4:4.6.1-3 cpp-4.4_4.4.6-10 cpp-4.5_4.5.3-8 cpp-4.6_4.6.1-9+hurd.1 cron_3.0pl1-118 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.2 deborphan_1.7.28.5 dialog_1.1-20110707-1 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.0.3 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 exim4-base_4.76-2+b3 exim4-config_4.76-2 exim4-daemon-light_4.76-2+b3 fakeroot_1.15.1-1 file_5.08-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.5_4.5.3-8 g++-4.6_4.6.1-9+hurd.1 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.1-3 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-10 gcc-4.4-base_4.4.6-10 gcc-4.5_4.5.3-8 gcc-4.5-base_4.5.3-8 gcc-4.6_4.6.1-9+hurd.1 gcc-4.6-base_4.6.1-9+hurd.1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-9+hurd.1 git_1:1.7.6.3-1 git-man_1:1.7.6.3-1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-3 hurd-dev_20110519-3 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3+hurd.1 libapt-pkg-dev_0.8.15.8 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libboost-iostreams1.46.1_1.46.1-7 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.3_2.13-21 libc0.3-dev_2.13-21 libc0.3-xen_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.7-3 libcwidget3_0.5.16-3.1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdigest-sha1-perl_2.13-2 libdpkg-perl_1.16.1 libelfg0_0.8.13-3 libept-dev_1.0.5 libept1_1.0.5 liberror-perl_0.17-1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgcc1_1:4.6.1-9+hurd.1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.1-9+hurd.1 libglib2.0-0_2.28.8-1 libglib2.0-data_2.28.6-1 libgmp10_2:5.0.2+dfsg-2 libgnutls26_2.12.10-2 libgomp1_4.6.1-9+hurd.1 libgpg-error0_1.10-1 libice6_2:1.0.7-2 libidn11_1.22-3 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-3 liblockfile-bin_1.09-3 liblockfile1_1.09-3 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.08-1 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libp11-kit0_0.7-2 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libquadmath0_4.6.1-9+hurd.1 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 librtmp0_2.4~20110711.gitc28f1bab-1 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libsigc++-2.0-0c2a_2.2.9-1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-9+hurd.1 libstdc++6-4.5-dev_4.5.3-8 libstdc++6-4.6-dev_4.6.1-9+hurd.1 libsysfs2_2.1.0+repack-1 libtagcoll2-dev_2.0.13-1 libtasn1-3_2.10-1 libtext-charwidth-perl_0.04-6+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2+b1 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.19.1-5 libwibble-dev_0.1.26-1 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxapian-dev_1.2.7-1 libxapian22_1.2.7-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-2 netbase_4.46 netcat-traditional_1.10-39 openssl_1.0.0e-2 original-awk_2011-05-06-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 random-egd_0.5-0+hurd.1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-bitstream-vera_1.10-8 ttf-freefont_20100919-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.16.2-0 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xml-core_0.13 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5+hurd.1 dpkg-dev_1.16.1.1 g++-4.5_4.5.3-9 g++-4.6_4.6.2-16+hurd.1 gcc-4.4_4.4.6-14 gcc-4.5_4.5.3-9 gcc-4.6_4.6.2-16+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20111010-1 hurd-dev_20111206-1 libc0.3-dev_2.13-25 libstdc++6_4.6.2-16+hurd.1 libstdc++6-4.5-dev_4.5.3-9 libstdc++6-4.6-dev_4.6.2-16+hurd.1
+Package versions: adduser_3.113 apt_0.8.15.9 apt-utils_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3+hurd.1 binutils_2.22-5+hurd.1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.2-4 cpp-4.4_4.4.6-14 cpp-4.5_4.5.3-9 cpp-4.6_4.6.2-16+hurd.1 cron_3.0pl1-120 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2012.01.08 debianutils_4.0.4 deborphan_1.7.28.5 dialog_1.1-20111020-1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.1-1+hurd.1 file_5.10-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3.1 g++_4:4.6.1-3 g++-4.5_4.5.3-9 g++-4.6_4.6.2-16+hurd.1 gawk_1:3.1.8+dfsg-0.1 gcc_4:4.6.2-4 gcc-4.4_4.4.6-14 gcc-4.4-base_4.4.6-14 gcc-4.5_4.5.3-9 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-16+hurd.1 gcc-4.6-base_4.6.2-16+hurd.1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-16+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20111010-1 gnupg_1.4.11-3 gobjc-4.4_4.4.6-14 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20111206-1 hurd-dev_20111206-1 initscripts_2.88dsf-13.13 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg-dev_0.8.15.9 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libboost-iostreams1.46.1_1.46.1-8 libboost-iostreams1.48.0_1.48.0-3 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-25 libc-dev-bin_2.13-25 libc0.3_2.13-25 libc0.3-dev_2.13-25 libc0.3-xen_2.13-25 libcairo2_1.10.2-7 libclass-isa-perl_0.36-2 libcomerr2_1.42.1-2 libcroco3_0.6.2-2 libcwidget3_0.5.16-3.1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.1 libelfg0_0.8.13-3 libept-dev_1.0.5 libept1_1.0.5 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-16+hurd.1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-16+hurd.1 libglib2.0-0_2.30.2-6 libglib2.0-data_2.28.8-1 libgmp10_2:5.0.4+dfsg-1 libgnutls26_2.12.16-1 libgomp1_4.6.2-16+hurd.1 libgpg-error0_1.10-3 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.28-1.1 liblocale-gettext-perl_1.05-7+b1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libncursesw5_5.9-4 libobjc2_4.5.3-9 libp11-kit0_0.11-3 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libpopt0_1.16-3 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libquadmath0_4.6.2-16+hurd.1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libsasl2-2_2.1.25.dfsg1-4 libsasl2-modules_2.1.25.dfsg1-4 libsigc++-2.0-0c2a_2.2.9-1.1 libsigsegv2_2.9-4 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0g-1 libstdc++6_4.6.2-16+hurd.1 libstdc++6-4.5-dev_4.5.3-9 libstdc++6-4.6-dev_4.6.2-16+hurd.1 libswitch-perl_2.16-2 libsysfs2_2.1.0+repack-1 libtagcoll2-dev_2.0.13-1 libtasn1-3_2.11-1 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-4+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.20.1-4 libwibble-dev_0.1.26-1 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxapian-dev_1.2.7-1 libxapian22_1.2.7-1 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-4 ncurses-bin_5.9-4 netbase_4.47 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.3-1 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13 sysvinit-utils_2.88dsf-13.13 tar_1.26-2 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xml-core_0.13 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-1 zlib1g-dev_1:1.2.6.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -408,12 +387,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -422,14 +401,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -437,9 +411,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -450,20 +424,33 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+ debian/rules build
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -472,36 +459,42 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
/usr/bin/fakeroot debian/rules binary-arch
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
** inst
** preparing package for lazy loading
** help
@@ -512,18 +505,20 @@ make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -531,12 +526,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -545,67 +545,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org> >../r-bioc-limma_3.10.0-1_hurd-i386.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org> >../r-bioc-limma_3.10.3-1_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0617
+Build finished at 20120307-0652
-r-bioc-limma_3.10.0-1_hurd-i386.changes:
+r-bioc-limma_3.10.3-1_hurd-i386.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: hurd-i386
-Version: 3.10.0-1
-Distribution: unstable
+Version: 3.10.3-1
+Distribution: sid
Urgency: low
-Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org>
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 9a2889bc56903253e3155fbb9086f69ab7f994fb 1470658 r-bioc-limma_3.10.0-1_hurd-i386.deb
+ 9c184a6137ff0a60030efb6cf6ef56fbfdc4bc0e 1475506 r-bioc-limma_3.10.3-1_hurd-i386.deb
Checksums-Sha256:
- 4f13464cbc4b61e95b0fd657b635b03dbca5b89c8727c97cd13eea2338e4a18c 1470658 r-bioc-limma_3.10.0-1_hurd-i386.deb
+ 5bbe20439c269987533aeaddaa1a8b039b99e4ccc2408c7083ae386c7a988fca 1475506 r-bioc-limma_3.10.3-1_hurd-i386.deb
Files:
- ee367ab0ab21913d6b3b48a9d67acd04 1470658 gnu-r optional r-bioc-limma_3.10.0-1_hurd-i386.deb
+ 0339f2007ef029ec677909cc93438cc8 1475506 gnu-r optional r-bioc-limma_3.10.3-1_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_hurd-i386.deb
+r-bioc-limma_3.10.3-1_hurd-i386.deb
───────────────────────────────────
new debian package, version 2.0.
- size 1470658 bytes: control archive= 1549 bytes.
- 776 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1475506 bytes: control archive= 1578 bytes.
+ 777 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1673
- Depends: libc0.3 (>= 2.2.6), r-base-core (>= 2.14.0~)
+ Installed-Size: 1680
+ Depends: libc0.3 (>= 2.2.6), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -617,51 +652,52 @@ r-bioc-limma_3.10.0-1_hurd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 06:15 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 06:15 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2011-11-04 06:15 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 958 2011-11-04 06:15 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1045 2011-11-04 06:15 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6023 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5603 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 216 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 518 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2011-11-04 06:16 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197382 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3783 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 87742 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 737661 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-11-04 06:15 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1984 2011-11-04 06:15 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1354 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 456657 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3277 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6221 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2392 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-11-04 06:16 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-04 06:16 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9458 2011-11-04 06:16 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2118 2011-11-04 06:14 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 329 2011-11-04 06:14 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-03-07 06:51 ./
+drwxr-xr-x root/root 0 2012-03-07 06:51 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 06:49 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 06:49 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 06:50 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 06:50 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2012-03-07 06:49 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 958 2012-03-07 06:49 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-03-07 06:50 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1047 2012-03-07 06:49 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6022 2012-03-07 06:50 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2012-03-07 06:50 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 06:50 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2012-03-07 06:50 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 06:50 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2012-03-07 06:51 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2012-03-07 06:51 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 06:50 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 06:50 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198257 2012-03-07 06:50 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3766 2012-03-07 06:50 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 06:50 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 89361 2012-03-07 06:50 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2012-03-07 06:50 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2012-03-07 06:50 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2012-03-07 06:50 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737677 2012-03-07 06:50 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2012-03-07 06:50 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 2173 2012-03-07 06:50 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 06:50 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1354 2012-03-07 06:50 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 459832 2012-03-07 06:50 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3276 2012-03-07 06:50 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2012-03-07 06:50 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2012-03-07 06:50 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2012-03-07 06:50 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2012-03-07 06:50 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-07 06:50 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2012-03-07 06:50 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 06:51 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 06:51 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 06:51 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 06:47 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2302 2012-03-07 06:47 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 06:47 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -675,32 +711,34 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /home/buildd/build/chroot-unstable/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1
+Purging /home/buildd/build/chroot-sid/build/buildd-r-bioc-limma_3.10.3-1-hurd-i386-GKhrqA
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a
+ libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
+ libboost-iostreams1.48.0 libsysfs2 libusb-0.1-4p
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 74 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a
+ libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
+ libboost-iostreams1.48.0 libsysfs2 libusb-0.1-4p
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
cdbs* dpatch* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1*
- libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf* liblzma5*
+ libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
libpcrecpp0* libpixman-1-0* libpng12-dev* libreadline-dev* libreadline6-dev*
libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libx11-6*
libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
libxext6* libxft2* libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
tcl8.5* tk8.5* unzip* x11-common* xdg-utils* zip*
-0 upgraded, 0 newly installed, 48 to remove and 68 not upgraded.
-After this operation, 74.6 MB disk space will be freed.
-(Reading database ... 19383 files and directories currently installed.)
+0 upgraded, 0 newly installed, 47 to remove and 74 not upgraded.
+After this operation, 73.5 MB disk space will be freed.
+(Reading database ... 18344 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing dpatch ...
@@ -733,8 +771,6 @@ Removing libtiff4 ...
Purging configuration files for libtiff4 ...
Removing libjpeg8-dev ...
Removing libjpeg8 ...
-Removing liblzma5 ...
-Purging configuration files for liblzma5 ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -780,10 +816,6 @@ Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
-insserv: warning: script 'K01random-egd' missing LSB tags and overrides
-insserv: warning: script 'random-egd' missing LSB tags and overrides
-insserv: warning: script 'K01random-egd' missing LSB tags and overrides
-insserv: warning: script 'random-egd' missing LSB tags and overrides
dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
@@ -795,18 +827,18 @@ Processing triggers for install-info ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: hurd-i386
-Build-Space: 5304
-Build-Time: 159
-Distribution: unstable
-Install-Time: 162
-Job: r-bioc-limma_3.10.0-1
+Build-Space: 5336
+Build-Time: 260
+Distribution: sid
+Install-Time: 416
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 461
-Source-Version: 3.10.0-1
-Space: 5304
+Package-Time: 883
+Source-Version: 3.10.3-1
+Space: 5336
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0617
-Build needed 00:07:41, 5304k disc space
+Finished at 20120307-0652
+Build needed 00:14:43, 5336k disc space
diff --git a/i386.log b/i386.log
index 31b14d7..6f4a8e1 100644
--- a/i386.log
+++ b/i386.log
@@ -1,73 +1,69 @@
-From buildd at murphy.debian.org Fri Nov 04 05:42:29 2011
+From buildd at murphy.debian.org Wed Mar 07 04:47:01 2012
Return-path: <buildd at murphy.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1RMCXt-0006wU-Bn
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:29 +0000
+ id 1S58mD-00046f-0j
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:47:01 +0000
Received: from murphy.debian.org ([70.103.162.31])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1RMCXr-0007LC-If
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:27 +0000
+ id 1S58mB-0006Au-Nm
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:47:00 +0000
Received: from buildd by murphy.debian.org with local (Exim 4.72)
(envelope-from <buildd at murphy.debian.org>)
- id 1RMCXp-0002rU-Ph; Fri, 04 Nov 2011 05:42:25 +0000
-Message-Id: <E1RMCXp-0002rU-Ph at murphy.debian.org>
+ id 1S58mA-0005Xl-5O; Wed, 07 Mar 2012 04:46:58 +0000
+Message-Id: <E1S58mA-0005Xl-5O at murphy.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Fri, 4 Nov 2011 05:42:25 +0000
+Date: Wed, 7 Mar 2012 04:46:58 +0000
From: buildd on murphy <buildd at murphy.debian.org>
To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on i386 (dist=sid)
-Key-Id: B074D6C9
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on i386 (dist=sid)
+Key-Id: 2B54027C
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (i386) 04 Nov 2011 05:38 ║
+║ r-bioc-limma 3.10.3-1 (i386) 07 Mar 2012 04:44 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: i386
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
+Hit http://ftp.us.debian.org sid InRelease
Get:1 http://incoming.debian.org Release.gpg [836 B]
-Get:2 http://ftp.us.debian.org sid InRelease [146 kB]
Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
-Get:3 http://incoming.debian.org Release [1604 B]
-Get:4 http://ftp.us.debian.org sid/main Sources/DiffIndex [2038 B]
-Get:5 http://incoming.debian.org Sources [31.6 kB]
-Get:6 http://incoming.debian.org Packages [571 kB]
+Get:2 http://incoming.debian.org Release [1616 B]
+Hit http://incoming.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Translation-en
Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
-Get:7 http://ftp.us.debian.org sid/main i386 Packages/DiffIndex [2038 B]
-Get:8 http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex [2023 B]
+Get:3 http://incoming.debian.org Sources [64.3 kB]
+Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
+Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
Ign http://ftp.us.debian.org sid/contrib TranslationIndex
-Get:9 http://ftp.us.debian.org sid/main TranslationIndex [2045 B]
-Get:10 http://ftp.us.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
-Ign http://incoming.debian.org sid/contrib Translation-en
-Get:11 http://ftp.us.debian.org sid/main i386 2011-11-04-0214.23.pdiff [27.0 kB]
-Get:12 http://ftp.us.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
+Get:4 http://ftp.us.debian.org sid/main TranslationIndex [2154 B]
+Get:5 http://incoming.debian.org Packages [853 kB]
+Get:6 http://ftp.us.debian.org sid/contrib Translation-en [37.1 kB]
+Get:7 http://ftp.us.debian.org sid/main Translation-en [3906 kB]
Ign http://incoming.debian.org Translation-en
-Get:13 http://ftp.us.debian.org sid/contrib i386 2011-11-04-0214.23.pdiff [271 B]
-Ign http://ftp.us.debian.org sid/contrib Translation-en
-Get:14 http://ftp.us.debian.org sid/main i386 2011-11-04-0214.23.pdiff [27.0 kB]
-Get:15 http://ftp.us.debian.org sid/contrib i386 2011-11-04-0214.23.pdiff [271 B]
-Fetched 797 kB in 7s (102 kB/s)
+Fetched 4865 kB in 21s (227 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -88,11 +84,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 2s (335 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 2s (337 kB/s)
Download complete and in download only mode
Check arch
@@ -106,222 +102,187 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-files: already installed (6.7)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-2)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42.1-2)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.11)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.12)
-sysvinit: already installed (2.88dsf-13.12)
-tar: already installed (1.26-2)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+login: already installed (1:4.1.5-1)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-4)
+mount: already installed (2.20.1-4)
+util-linux: already installed (2.20.1-4)
+libc6-dev: already installed (2.13-27)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 libreadline-dev
- libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
- libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath0-dbg
- libmudflap0-dbg binutils-gold gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0
- libstdc++6 libstdc++6-4.6-dev
-9 upgraded, 76 newly installed, 0 to remove and 6 not upgraded.
-Need to get 45.8 MB/75.1 MB of archives.
-After this operation, 120 MB of additional disk space will be used.
-Get:1 http://ftp.us.debian.org/debian/ sid/main libgomp1 i386 4.6.2-4 [27.3 kB]
-Get:2 http://ftp.us.debian.org/debian/ sid/main gcc-4.6-base i386 4.6.2-4 [136 kB]
-Get:3 http://ftp.us.debian.org/debian/ sid/main libgcc1 i386 1:4.6.2-4 [54.2 kB]
-Get:4 http://ftp.us.debian.org/debian/ sid/main cpp-4.6 i386 4.6.2-4 [4646 kB]
-Get:5 http://ftp.us.debian.org/debian/ sid/main libquadmath0 i386 4.6.2-4 [195 kB]
-Get:6 http://ftp.us.debian.org/debian/ sid/main libstdc++6-4.6-dev i386 4.6.2-4 [1643 kB]
-Get:7 http://ftp.us.debian.org/debian/ sid/main g++-4.6 i386 4.6.2-4 [6779 kB]
-Get:8 http://ftp.us.debian.org/debian/ sid/main gcc-4.6 i386 4.6.2-4 [7317 kB]
-Get:9 http://ftp.us.debian.org/debian/ sid/main libstdc++6 i386 4.6.2-4 [344 kB]
-Get:10 http://ftp.us.debian.org/debian/ sid/main libgfortran3 i386 4.6.2-4 [355 kB]
-Get:11 http://ftp.us.debian.org/debian/ sid/main gfortran-4.6 i386 4.6.2-4 [5352 kB]
-Get:12 http://ftp.us.debian.org/debian/ sid/main r-base-core i386 2.14.0-1 [18.9 MB]
-Get:13 http://ftp.us.debian.org/debian/ sid/main r-base-dev all 2.14.0-1 [3488 B]
+0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
+Need to get 20.3 MB/55.4 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://ftp.us.debian.org/debian/ sid/main dpatch all 2.0.35 [95.2 kB]
+Get:2 http://ftp.us.debian.org/debian/ sid/main unzip i386 6.0-5 [183 kB]
+Get:3 http://ftp.us.debian.org/debian/ sid/main r-base-core i386 2.14.2-1 [20.0 MB]
+Get:4 http://ftp.us.debian.org/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 45.8 MB in 2min 41s (283 kB/s)
-(Reading database ... 10684 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.2-3 (using .../libgomp1_4.6.2-4_i386.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.2-3 (using .../gcc-4.6-base_4.6.2-4_i386.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.2-4) ...
-(Reading database ... 10684 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.2-3 (using .../libgcc1_1%3a4.6.2-4_i386.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.2-4) ...
-(Reading database ... 10684 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.2-3 (using .../cpp-4.6_4.6.2-4_i386.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libquadmath0 4.6.2-3 (using .../libquadmath0_4.6.2-4_i386.deb) ...
-Unpacking replacement libquadmath0 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.2-3 (using .../libstdc++6-4.6-dev_4.6.2-4_i386.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.2-3 (using .../g++-4.6_4.6.2-4_i386.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.2-3 (using .../gcc-4.6_4.6.2-4_i386.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.2-3 (using .../libstdc++6_4.6.2-4_i386.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.2-4) ...
+Fetched 20.3 MB in 1min 8s (297 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10684 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_i386.deb) ...
+(Reading database ... 10962 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_i386.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_i386.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_i386.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_i386.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_i386.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_i386.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_i386.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_i386.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_i386.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_i386.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-4_i386.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_i386.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_i386.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_i386.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_i386.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_i386.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_i386.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_i386.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_i386.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_i386.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_i386.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_i386.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_i386.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_i386.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_i386.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_i386.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_i386.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_i386.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_i386.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_i386.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_i386.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_i386.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_i386.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_i386.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_i386.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_i386.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_i386.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_i386.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_i386.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_i386.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_i386.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_i386.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_i386.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_i386.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_i386.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_i386.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_i386.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_i386.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_i386.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_i386.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ...
Selecting previously unselected package libxext6.
@@ -331,19 +292,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_i386.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_i386.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_i386.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_i386.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_i386.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_i386.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_i386.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_i386.deb) ...
+Unpacking file (from .../archives/file_5.10-1_i386.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_i386.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
Selecting previously unselected package gettext.
@@ -351,31 +310,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_i386.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-4_i386.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_i386.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_i386.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_i386.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_i386.deb) ...
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Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_i386.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_i386.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_i386.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_i386.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_i386.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_i386.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_i386.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_i386.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_i386.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_i386.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_i386.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_i386.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -383,138 +342,132 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_i386.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_i386.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_i386.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_i386.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_i386.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_i386.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_i386.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_i386.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_i386.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_i386.deb) ...
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Unpacking unzip (from .../archives/unzip_6.0-5_i386.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_i386.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_i386.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_i386.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_i386.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_i386.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libgomp1 (4.6.2-4) ...
-Setting up cpp-4.6 (4.6.2-4) ...
-Setting up libquadmath0 (4.6.2-4) ...
-Setting up gcc-4.6 (4.6.2-4) ...
-Setting up libpipeline1 (1.2.0-4) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-4) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-4) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
-Setting up libstdc++6-4.6-dev (4.6.2-4) ...
-Setting up g++-4.6 (4.6.2-4) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libgfortran3_4.6.2-4 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-4 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.7-1
+Package versions: apt_0.8.15.9 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gawk_1:3.1.8+dfsg-0.1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libsigsegv2_2.9-4 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.7-1 login_1:4.1.5-1 lsb-base_3.2+Debian29 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -525,12 +478,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -540,8 +493,8 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -549,9 +502,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -562,6 +515,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -572,47 +538,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
-
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -624,18 +596,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -643,12 +617,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -657,31 +636,57 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-limma_3.10.0-1_i386.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-limma_3.10.3-1_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0542
+Build finished at 20120307-0446
-r-bioc-limma_3.10.0-1_i386.changes:
+r-bioc-limma_3.10.3-1_i386.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: i386
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
@@ -689,35 +694,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
+ .
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- bc452bf703eca14d99037e3e0cd082cf9ec343dc 1470036 r-bioc-limma_3.10.0-1_i386.deb
+ b8bdf61528f54b5689810bcd741fe3b739f270ca 1473910 r-bioc-limma_3.10.3-1_i386.deb
Checksums-Sha256:
- c950131c56a0b67c627fc396ef5edbe062ffc87e86a1fff6cc63f17e7420a284 1470036 r-bioc-limma_3.10.0-1_i386.deb
+ 89ba71e13c512df40fdd0f8d93f4688b3b1aa44a99329367436ffa21cab12d9d 1473910 r-bioc-limma_3.10.3-1_i386.deb
Files:
- ee767a787bd5febf12fe327ed51f3fae 1470036 gnu-r optional r-bioc-limma_3.10.0-1_i386.deb
+ e95071865c64503ff465bd1b5d68d04b 1473910 gnu-r optional r-bioc-limma_3.10.3-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_i386.deb
+r-bioc-limma_3.10.3-1_i386.deb
──────────────────────────────
new debian package, version 2.0.
- size 1470036 bytes: control archive= 1535 bytes.
- 769 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1473910 bytes: control archive= 1571 bytes.
+ 770 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1672
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.0~)
+ Installed-Size: 1679
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -729,51 +743,52 @@ r-bioc-limma_3.10.0-1_i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9458 2011-11-04 05:42 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-11-04 05:42 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34556 2011-11-04 05:42 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1901 2011-11-04 05:42 ./usr/lib/R/site-library/limma/NAMESPACE
--rwxr-xr-x root/root 1230 2011-11-04 05:42 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2011-11-04 05:42 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 197381 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 383 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3785 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 1984 2011-11-04 05:42 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2392 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 455544 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6221 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1350 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 3270 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/limma.rdx
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 87742 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 737661 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1711 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1049 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 216 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 518 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 6023 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 2886 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5603 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 964 2011-11-04 05:42 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 329 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2118 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2012-03-07 04:46 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2012-03-07 04:46 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2012-03-07 04:46 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1901 2012-03-07 04:46 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2012-03-07 04:46 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2012-03-07 04:46 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 198252 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 383 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3779 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 2173 2012-03-07 04:46 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2392 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 458691 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6221 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1350 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3274 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 42743 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 89361 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 737677 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1711 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1050 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 216 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 6022 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 2886 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5603 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 964 2012-03-07 04:46 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 560 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2302 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 264 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -787,11 +802,11 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-i386-sbuild-fa1836a3-2e66-4f74-b464-e8d905068a76/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To
+Purging /var/lib/schroot/mount/sid-i386-sbuild-9360c0d9-7115-4448-bcbc-25e0e811bffd/build/buildd-r-bioc-limma_3.10.3-1-i386-oxhv3K
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
@@ -799,7 +814,7 @@ The following packages will be REMOVED:
bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
+ libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgfortran3*
libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
@@ -807,11 +822,11 @@ The following packages will be REMOVED:
libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6*
libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
- po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf*
- unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 76 to remove and 6 not upgraded.
-After this operation, 120 MB disk space will be freed.
-(Reading database ... 14696 files and directories currently installed.)
+ po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* unzip*
+ x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 76 to remove and 4 not upgraded.
+After this operation, 118 MB disk space will be freed.
+(Reading database ... 15020 files and directories currently installed.)
Removing debhelper ...
Removing man-db ...
Purging configuration files for man-db ...
@@ -863,12 +878,14 @@ Removing libdatrie1 ...
Purging configuration files for libdatrie1 ...
Removing libexpat1 ...
Purging configuration files for libexpat1 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libffi5 ...
+Purging configuration files for libffi5 ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libgfortran3 ...
Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing libsm6 ...
@@ -927,8 +944,6 @@ Purging configuration files for libxml2 ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
Removing unzip ...
Purging configuration files for unzip ...
Removing x11-common ...
@@ -944,18 +959,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: i386
-Build-Space: 5300
-Build-Time: 19
+Build-Space: 5328
+Build-Time: 22
Distribution: sid
-Install-Time: 191
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 92
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 228
-Source-Version: 3.10.0-1
-Space: 5300
+Package-Time: 146
+Source-Version: 3.10.3-1
+Space: 5328
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0542
-Build needed 00:03:48, 5300k disc space
-Signature with key 'B074D6C9' requested:
+Finished at 20120307-0446
+Build needed 00:02:26, 5328k disc space
+Signature with key '2B54027C' requested:
diff --git a/ia64.log b/ia64.log
index 02a5e14..76f4973 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,4 +1,4 @@
-From buildd at caballero.debian.org Fri Nov 04 05:40:59 2011
+From buildd at caballero.debian.org Wed Mar 07 08:42:01 2012
Return-path: <buildd at caballero.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,23 +6,23 @@ Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
- id 1RMCWQ-0006kE-Ci
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:40:59 +0000
+ id 1S5CRc-0006Eb-SA
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 08:42:01 +0000
Received: from caballero.debian.org ([193.201.200.200])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=caballero.debian.org,
EMAIL=hostmaster at caballero.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
- id 1RMCWO-0001Ha-90; Fri, 04 Nov 2011 05:40:56 +0000
+ id 1S5CRb-0004LN-S4; Wed, 07 Mar 2012 08:42:00 +0000
Received: from buildd by caballero.debian.org with local (Exim 4.72)
- (envelope-from <buildd at caballero.debian.org>) id 1RMCWN-0007eX-He
- for buildd-porters at caballero.debian.org; Fri, 04 Nov 2011 05:40:55 +0000
-Date: Fri, 04 Nov 2011 05:40:55 +0000
-Message-Id: <E1RMCWN-0007eX-He at caballero.debian.org>
+ (envelope-from <buildd at caballero.debian.org>) id 1S5CRb-0004os-Ep
+ for buildd-porters at caballero.debian.org; Wed, 07 Mar 2012 08:41:59 +0000
+Date: Wed, 07 Mar 2012 08:41:59 +0000
+Message-Id: <E1S5CRb-0004os-Ep at caballero.debian.org>
From: buildd on caballero <buildd at caballero.debian.org>
To: buildd-porters at caballero.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on ia64 (dist=sid)
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on ia64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: buildd-porters at caballero.debian.org
@@ -31,12 +31,12 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on caballero.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (ia64) 04 Nov 2011 05:38 ║
+║ r-bioc-limma 3.10.3-1 (ia64) 07 Mar 2012 08:39 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: ia64
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
@@ -98,35 +98,64 @@ W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
I: This option will be removed in the future; please update your configuration
W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
I: This option will be removed in the future; please update your configuration
-Get:1 http://mirror.positive-internet.com sid InRelease [146 kB]
-Get:2 http://mirror.positive-internet.com sid/main Sources/DiffIndex [2038 B]
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Hit http://mirror.positive-internet.com sid InRelease
+Hit http://mirror.positive-internet.com sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
Hit http://mirror.positive-internet.com sid/contrib Sources/DiffIndex
-Get:3 http://mirror.positive-internet.com sid/main ia64 Packages/DiffIndex [2038 B]
-Get:4 http://mirror.positive-internet.com sid/contrib ia64 Packages/DiffIndex [2023 B]
+Hit http://mirror.positive-internet.com sid/main ia64 Packages/DiffIndex
+Hit http://mirror.positive-internet.com sid/contrib ia64 Packages/DiffIndex
Ign http://mirror.positive-internet.com sid/contrib TranslationIndex
-Get:5 http://mirror.positive-internet.com sid/main TranslationIndex [2045 B]
-Get:6 http://mirror.positive-internet.com sid/main 2011-11-04-0214.23.pdiff [9840 B]
-Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://mirror.positive-internet.com sid/main 2011-11-04-0214.23.pdiff [9840 B]
-Get:9 http://mirror.positive-internet.com sid/main ia64 2011-11-04-0214.23.pdiff [24.2 kB]
-Get:10 http://mirror.positive-internet.com sid/contrib ia64 2011-11-04-0214.23.pdiff [271 B]
-Ign http://mirror.positive-internet.com sid/contrib Translation-en
+Hit http://mirror.positive-internet.com sid/main TranslationIndex
+Hit http://incoming.debian.org Release.gpg
+Hit http://mirror.positive-internet.com sid/contrib Translation-en
+Hit http://mirror.positive-internet.com sid/main Translation-en
Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/main ia64 Packages/DiffIndex
Hit http://incoming.debian.org sid/contrib ia64 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
-Get:11 http://incoming.debian.org Release [1604 B]
-Get:12 http://mirror.positive-internet.com sid/main ia64 2011-11-04-0214.23.pdiff [24.2 kB]
-Get:13 http://incoming.debian.org Sources [31.6 kB]
-Get:14 http://incoming.debian.org Packages [571 kB]
-Ign http://incoming.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org Release
+Ign http://incoming.debian.org sid/main 2012-03-07-0816.46.pdiff
+Ign http://incoming.debian.org sid/main ia64 2012-03-07-0816.46.pdiff
+Hit http://incoming.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Translation-en
+Hit http://incoming.debian.org sid/main
+Hit http://incoming.debian.org sid/main ia64
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
Ign http://incoming.debian.org Translation-en
-Get:15 http://mirror.positive-internet.com sid/contrib ia64 2011-11-04-0214.23.pdiff [271 B]
-Fetched 794 kB in 8s (92.3 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -207,11 +236,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (639 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (867 kB/s)
Download complete and in download only mode
Check arch
@@ -321,7 +350,7 @@ I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
Removing negative dependencies:
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
@@ -356,7 +385,7 @@ I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
Checking correctness of dependencies...
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
@@ -393,7 +422,7 @@ I: This option will be removed in the future; please update your configuration
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
@@ -426,39 +455,39 @@ I: This option will be removed in the future; please update your configuration
W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
I: This option will be removed in the future; please update your configuration
base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
+base-passwd: already installed (3.5.24)
bash: already installed (4.1-3)
coreutils: already installed (8.13-3)
dash: already installed (0.5.7-2)
debianutils: already installed (4.0.4)
diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42.1-2)
findutils: already installed (4.4.2-1+b1)
grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
+gzip: already installed (1.4-2)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.12)
-sysvinit: already installed (2.88dsf-13.12)
-tar: already installed (1.26-2)
+sysvinit-utils: already installed (2.88dsf-13.13)
+sysvinit: already installed (2.88dsf-13.13)
+tar: already installed (1.26-3)
bsdutils: already installed (1:2.19.1-5)
mount: already installed (2.19.1-5)
util-linux: already installed (2.19.1-5)
-libc6.1-dev: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+libc6.1-dev: already installed (2.13-26)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
@@ -527,7 +556,7 @@ Reading state information...
The following extra packages will be installed:
bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
@@ -542,17 +571,21 @@ Suggested packages:
gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
@@ -560,82 +593,89 @@ The following NEW packages will be installed:
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 77 newly installed, 0 to remove and 40 not upgraded.
+Need to get 21.4 MB/71.8 MB of archives.
+After this operation, 182 MB of additional disk space will be used.
+Get:1 http://mirror.positive-internet.com/debian/ sid/main r-base-core ia64 2.14.2-1 [21.3 MB]
+Get:2 http://mirror.positive-internet.com/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
-Need to get 0 B/70.2 MB of archives.
-After this operation, 186 MB of additional disk space will be used.
+Fetched 21.4 MB in 1s (10.9 MB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10534 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_ia64.deb) ...
+(Reading database ... 10622 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_ia64.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_ia64.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_ia64.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_ia64.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_ia64.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_ia64.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_ia64.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_ia64.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_ia64.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_ia64.deb) ...
Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_ia64.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_ia64.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_ia64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_ia64.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_ia64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_ia64.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_ia64.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_ia64.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_ia64.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_ia64.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_ia64.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_ia64.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_ia64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_ia64.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_ia64.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_ia64.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_ia64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_ia64.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_ia64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_ia64.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_ia64.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_ia64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_ia64.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_ia64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_ia64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_ia64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_ia64.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_ia64.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_ia64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_ia64.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_ia64.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_ia64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_ia64.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_ia64.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_ia64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_ia64.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_ia64.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_ia64.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_ia64.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_ia64.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_ia64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_ia64.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_ia64.deb) ...
Selecting previously unselected package libxext6.
@@ -645,19 +685,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_ia64.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_ia64.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_ia64.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_ia64.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_ia64.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_ia64.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_ia64.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_ia64.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_ia64.deb) ...
+Unpacking file (from .../archives/file_5.10-1_ia64.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_ia64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
Selecting previously unselected package gettext.
@@ -665,31 +703,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_ia64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_ia64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_ia64.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_ia64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_ia64.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_ia64.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_ia64.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_ia64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_ia64.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_ia64.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_ia64.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_ia64.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_ia64.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_ia64.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_ia64.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_ia64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_ia64.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_ia64.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -697,123 +735,124 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_ia64.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_ia64.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_ia64.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_ia64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_ia64.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_ia64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_ia64.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_ia64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_ia64.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_ia64.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_ia64.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_ia64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_ia64.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_ia64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_ia64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_ia64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_ia64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-4) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
@@ -848,7 +887,7 @@ I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
Checking correctness of dependencies...
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
@@ -881,8 +920,8 @@ I: This option will be removed in the future; please update your configuration
W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
I: This option will be removed in the future; please update your configuration
Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-6
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6.1_2.13-21 libc6.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-6 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-4 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6.1-dev_2.13-26 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.1.1-1
+Package versions: apt_0.8.15.10 base-files_6.5 base-passwd_3.5.24 bash_4.1-3 binutils_2.22-4 bsdmainutils_9.0.1 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.1-1 file_5.10-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-1 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-2 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.13 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6.1_2.13-26 libc6.1-dev_2.13-26 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-3 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-2 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13 sysvinit-utils_2.88dsf-13.13 tar_1.26-3 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -923,12 +962,12 @@ I: This option will be removed in the future; please update your configuration
W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
I: This option will be removed in the future; please update your configuration
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -968,8 +1007,8 @@ I: This option will be removed in the future; please update your configuration
W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
I: This option will be removed in the future; please update your configuration
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -977,9 +1016,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -990,6 +1029,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -1000,47 +1052,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -1052,18 +1110,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -1071,12 +1131,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -1085,31 +1150,57 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../r-bioc-limma_3.10.0-1_ia64.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../r-bioc-limma_3.10.3-1_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0540
+Build finished at 20120307-0841
-r-bioc-limma_3.10.0-1_ia64.changes:
+r-bioc-limma_3.10.3-1_ia64.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: ia64
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
Maintainer: ia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org>
@@ -1117,35 +1208,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- efe078c213aff21aaf003123a3cf04ccae3de5e5 1474804 r-bioc-limma_3.10.0-1_ia64.deb
+ 4282a891ca2fdcfc7a91ebe55ad477420b699671 1479082 r-bioc-limma_3.10.3-1_ia64.deb
Checksums-Sha256:
- 9b6454d579504eedc7e7b2252d0f9d897fe7cdf406442d46cc662ea3f412db82 1474804 r-bioc-limma_3.10.0-1_ia64.deb
+ 3b83c3ba71a0a3ef96a5d2f4c92f8cbb16edc7d5a412c1989bb3436f8409677b 1479082 r-bioc-limma_3.10.3-1_ia64.deb
Files:
- e2776ca0c6578d32d1b08d68f40b1ee3 1474804 gnu-r optional r-bioc-limma_3.10.0-1_ia64.deb
+ 8f117c737187c812d08e60af63605c6a 1479082 gnu-r optional r-bioc-limma_3.10.3-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_ia64.deb
+r-bioc-limma_3.10.3-1_ia64.deb
──────────────────────────────
new debian package, version 2.0.
- size 1474804 bytes: control archive= 1540 bytes.
- 769 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1479082 bytes: control archive= 1573 bytes.
+ 770 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1687
- Depends: libc6.1 (>= 2.2), r-base-core (>= 2.14.0~)
+ Installed-Size: 1693
+ Depends: libc6.1 (>= 2.2), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -1157,51 +1257,52 @@ r-bioc-limma_3.10.0-1_ia64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:39 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 05:39 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2011-11-04 05:39 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 969 2011-11-04 05:39 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1055 2011-11-04 05:39 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6023 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5603 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 216 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 518 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 23480 2011-11-04 05:40 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197382 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3783 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 87742 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 737661 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-11-04 05:40 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1984 2011-11-04 05:40 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1350 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 455665 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3270 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6221 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2392 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-11-04 05:40 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-04 05:40 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9458 2011-11-04 05:40 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2118 2011-11-04 05:39 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 329 2011-11-04 05:39 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2012-03-07 08:41 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 969 2012-03-07 08:41 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1054 2012-03-07 08:41 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6022 2012-03-07 08:41 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2012-03-07 08:41 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 08:41 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2012-03-07 08:41 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 08:41 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 23480 2012-03-07 08:41 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 08:41 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198251 2012-03-07 08:41 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3777 2012-03-07 08:41 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 89361 2012-03-07 08:41 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2012-03-07 08:41 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2012-03-07 08:41 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2012-03-07 08:41 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737677 2012-03-07 08:41 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2012-03-07 08:41 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 2173 2012-03-07 08:41 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1348 2012-03-07 08:41 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 458449 2012-03-07 08:41 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3268 2012-03-07 08:41 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2012-03-07 08:41 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2012-03-07 08:41 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2012-03-07 08:41 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-07 08:41 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2012-03-07 08:41 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 08:41 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 08:40 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2302 2012-03-07 08:40 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 08:40 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1215,7 +1316,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-760fea7e-9b1c-417b-b345-3599e8894c67/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-04365a86-caef-4932-beb7-e49fc4803c1e/build/buildd-r-bioc-limma_3.10.3-1-ia64-DLnicp
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
@@ -1279,7 +1380,7 @@ I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
I: This option will be removed in the future; please update your configuration
W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
@@ -1317,7 +1418,7 @@ The following packages will be REMOVED:
bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
+ libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgfortran3*
libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
@@ -1327,9 +1428,9 @@ The following packages will be REMOVED:
libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf*
unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 76 to remove and 4 not upgraded.
-After this operation, 186 MB disk space will be freed.
-(Reading database ... 14544 files and directories currently installed.)
+0 upgraded, 0 newly installed, 77 to remove and 40 not upgraded.
+After this operation, 182 MB disk space will be freed.
+(Reading database ... 14698 files and directories currently installed.)
Removing debhelper ...
Removing man-db ...
Purging configuration files for man-db ...
@@ -1381,12 +1482,14 @@ Removing libdatrie1 ...
Purging configuration files for libdatrie1 ...
Removing libexpat1 ...
Purging configuration files for libexpat1 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libffi5 ...
+Purging configuration files for libffi5 ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libgfortran3 ...
Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing libsm6 ...
@@ -1487,24 +1590,54 @@ W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
I: This option will be removed in the future; please update your configuration
W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: ia64
-Build-Space: 5324
-Build-Time: 38
+Build-Space: 5352
+Build-Time: 41
Distribution: sid
-Install-Time: 59
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 62
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 115
-Source-Version: 3.10.0-1
-Space: 5324
+Package-Time: 120
+Source-Version: 3.10.3-1
+Space: 5352
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0540
-Build needed 00:01:55, 5324k disc space
+Finished at 20120307-0841
+Build needed 00:02:00, 5352k disc space
diff --git a/info b/info
index e01f5a0..e534743 100644
--- a/info
+++ b/info
@@ -1,13 +1,13 @@
-ia64~1320385259~sid~successful
-powerpc~1320385321~sid~successful
-kfreebsd-amd64~1320385342~sid~successful
-i386~1320385349~sid~successful
-mipsel~1320385562~sid~successful
-kfreebsd-i386~1320385600~sid~successful
-armel~1320386736~sid~successful
-hurd-i386~1320387509~sid~successful
-s390~1320388676~sid~successful
-sparc~1320392170~sid~successful
-mips~1320425211~sid~successful
-s390x~1323010892~sid~successful
-armhf~1324969059~sid~successful
+powerpc~1331095611~sid~successful
+i386~1331095621~sid~successful
+s390~1331095732~sid~successful
+kfreebsd-i386~1331095817~sid~successful
+s390x~1331095853~sid~successful
+sparc~1331096389~sid~successful
+armel~1331096691~sid~successful
+kfreebsd-amd64~1331096951~sid~successful
+mips~1331097741~sid~successful
+mipsel~1331100454~sid~successful
+armhf~1331100759~sid~successful
+hurd-i386~1331103281~sid~successful
+ia64~1331109721~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index c759729..58f78c4 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,4 +1,4 @@
-From buildd at fano.debian.org Fri Nov 04 05:42:22 2011
+From buildd at fano.debian.org Wed Mar 07 05:09:11 2012
Return-path: <buildd at fano.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,44 +6,43 @@ Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at fano.debian.org>)
- id 1RMCXl-0006vp-Th
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:22 +0000
+ id 1S597f-0008Em-4r
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 05:09:11 +0000
Received: from fano.debian.org ([206.12.19.110])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at fano.debian.org>)
- id 1RMCXj-0001LO-SW; Fri, 04 Nov 2011 05:42:20 +0000
+ id 1S597d-0007VX-Si; Wed, 07 Mar 2012 05:09:10 +0000
Received: from buildd by fano.debian.org with local (Exim 4.72)
(envelope-from <buildd at fano.debian.org>)
- id 1RMCXh-0006S1-5z; Fri, 04 Nov 2011 05:42:17 +0000
-Message-Id: <E1RMCXh-0006S1-5z at fano.debian.org>
+ id 1S597b-000Moi-Oy; Wed, 07 Mar 2012 05:09:07 +0000
+Message-Id: <E1S597b-000Moi-Oy at fano.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Fri, 4 Nov 2011 05:42:17 +0000
+Date: Wed, 7 Mar 2012 05:09:07 +0000
From: buildd on fano <buildd at fano.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on kfreebsd-amd64
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on kfreebsd-amd64
(dist=sid)
-Key-Id: D33FE1D8
+Key-Id: B22267E5
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (kfreebsd-amd64) 04 Nov 2011 05:38 ║
+║ r-bioc-limma 3.10.3-1 (kfreebsd-amd64) 07 Mar 2012 05:00 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: kfreebsd-amd64
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
Get:1 http://incoming.debian.org Release.gpg [836 B]
Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Get:2 http://mirror-ubc.debian.org sid InRelease [146 kB]
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
@@ -52,32 +51,35 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Get:3 http://mirror-ubc.debian.org sid/main Sources/DiffIndex [2038 B]
-Get:4 http://incoming.debian.org Release [1604 B]
+Get:2 http://mirror-ubc.debian.org sid InRelease [197 kB]
+Get:3 http://incoming.debian.org Release [1616 B]
Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
+Hit http://incoming.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Translation-en
+Hit http://incoming.debian.org sid/non-free Translation-en
+Get:4 http://mirror-ubc.debian.org sid/main Sources/DiffIndex [4123 B]
+Get:5 http://incoming.debian.org Sources [63.4 kB]
+Get:6 http://incoming.debian.org Packages [849 kB]
Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
-Get:5 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex [2038 B]
-Get:6 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex [2023 B]
+Get:7 http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex [2851 B]
+Get:8 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex [4123 B]
+Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
-Get:7 http://mirror-ubc.debian.org sid/main TranslationIndex [2045 B]
+Get:9 http://mirror-ubc.debian.org sid/main TranslationIndex [2154 B]
Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
-Get:8 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
-Get:9 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2011-11-04-0214.23.pdiff [19.9 kB]
-Get:10 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 2011-11-04-0214.23.pdiff [272 B]
-Get:11 http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages [87.5 kB]
-Get:12 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
-Get:13 http://incoming.debian.org Sources [31.6 kB]
-Ign http://mirror-ubc.debian.org sid/contrib Translation-en
-Ign http://mirror-ubc.debian.org sid/non-free Translation-en
-Get:14 http://incoming.debian.org Packages [571 kB]
-Get:15 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2011-11-04-0214.23.pdiff [19.9 kB]
-Ign http://incoming.debian.org sid/contrib Translation-en
-Ign http://incoming.debian.org sid/non-free Translation-en
+Get:10 http://mirror-ubc.debian.org sid/main 2012-03-07-0216.29.pdiff [16.4 kB]
+Get:11 http://mirror-ubc.debian.org sid/main 2012-03-07-0216.29.pdiff [16.4 kB]
+Get:12 http://mirror-ubc.debian.org sid/non-free 2012-03-07-0216.29.pdiff [831 B]
+Get:13 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2012-03-07-0216.29.pdiff [24.1 kB]
Ign http://incoming.debian.org Translation-en
-Get:16 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 2011-11-04-0214.23.pdiff [272 B]
-Fetched 877 kB in 7s (111 kB/s)
+Get:14 http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages [55.4 kB]
+Get:15 http://mirror-ubc.debian.org sid/contrib Translation-en [37.1 kB]
+Get:16 http://mirror-ubc.debian.org sid/main Translation-en [3906 kB]
+Get:17 http://mirror-ubc.debian.org sid/non-free Translation-en [69.7 kB]
+Get:18 http://mirror-ubc.debian.org sid/non-free 2012-03-07-0216.29.pdiff [831 B]
+Get:19 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2012-03-07-0216.29.pdiff [24.1 kB]
+Fetched 5235 kB in 31s (164 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -98,11 +100,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (576 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (663 kB/s)
Download complete and in download only mode
Check arch
@@ -116,60 +118,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-files: already installed (6.7)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
-findutils: already installed (4.4.2-1)
-freebsd-utils: already installed (8.2+ds2-5)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-2)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42.1-2)
+findutils: already installed (4.4.2-4)
+freebsd-utils: already installed (9.0-2)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-3)
+hostname: already installed (3.11)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.12)
-sysvinit: already installed (2.88dsf-13.12)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-5)
-util-linux: already installed (2.19.1-5)
+login: already installed (1:4.1.5-1)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-4)
+util-linux: already installed (2.20.1-4)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -178,107 +180,115 @@ Reading state information...
The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf libbz2-dev
- libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
- libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
- libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg ncurses-doc
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp groff less www-browser libmail-box-perl r-doc-info
- r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
- liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
- libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
- ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded.
+Need to get 20.3 MB/56.8 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ sid/main r-base-core kfreebsd-amd64 2.14.2-1 [20.3 MB]
+Get:2 http://mirror-ubc.debian.org/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 71 newly installed, 0 to remove and 7 not upgraded.
-Need to get 0 B/55.3 MB of archives.
-After this operation, 120 MB of additional disk space will be used.
+Fetched 20.3 MB in 16s (1257 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 12291 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-amd64.deb) ...
+(Reading database ... 11910 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_kfreebsd-amd64.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_kfreebsd-amd64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-amd64.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-amd64.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_kfreebsd-amd64.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-amd64.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_kfreebsd-amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxext6.
@@ -288,15 +298,13 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_kfreebsd-amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.09-2_kfreebsd-amd64.deb) ...
+Unpacking file (from .../file_5.10-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
Selecting previously unselected package gettext.
@@ -304,31 +312,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_kfreebsd-amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_kfreebsd-amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_kfreebsd-amd64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-amd64.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_kfreebsd-amd64.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_kfreebsd-amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -336,125 +344,125 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-amd64.deb
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_kfreebsd-amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_kfreebsd-amd64.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_kfreebsd-amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_kfreebsd-amd64.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../zip_3.0-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_kfreebsd-amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 kfreebsd-kernel-headers_0.57 libc0.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-11 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.57 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.1_2.13-21 libc0.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libgssglue1_0.3-3.1 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libsbuf0_8.2+ds1-4 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 kfreebsd-kernel-headers_0.77 libc0.1-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1
+Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 freebsd-utils_9.0-2 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-14 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-3 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0-2 kfreebsd-kernel-headers_0.77 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc0.1_2.13-27 libc0.1-dev_2.13-27 libcairo2_1.10.2-7 libcam6_9.0+ds1-1 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgeom1_9.0+ds1-1 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgnutls26_2.12.16-1 libgomp1_4.6.3-1 libgpg-error0_1.10-3 libgssglue1_0.3-4 libice6_2:1.0.7-2 libjail1_9.0+ds1-1 libjpeg8_8d-1 libjpeg8-dev_8d-1 libkiconv4_9.0+ds1-1 libkvm0_9.0+ds1-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.28-1.1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libncursesw5_5.9-4 libp11-kit0_0.11-3 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libprocps0_1:3.3.2-3 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libsasl2-2_2.1.25.dfsg1-4 libsbuf6_9.0+ds1-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtasn1-3_2.11-1 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.5-1 lsb-base_3.2+Debian30 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 netbase_4.47 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 psmisc_22.16-1 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -465,12 +473,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -480,18 +488,18 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture kfreebsd-amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -502,6 +510,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -512,47 +533,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
-
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -564,18 +591,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-l
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -583,12 +612,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -597,31 +631,57 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-limma_3.10.0-1_kfreebsd-amd64.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-limma_3.10.3-1_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0541
+Build finished at 20120307-0507
-r-bioc-limma_3.10.0-1_kfreebsd-amd64.changes:
+r-bioc-limma_3.10.3-1_kfreebsd-amd64.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-amd64
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
@@ -629,35 +689,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
+ .
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 55a4e3a8b1e3333f66145d763c6c5d9aa042272c 1471396 r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
+ 6717fb132020393b8251744a8d915054bbb13049 1477774 r-bioc-limma_3.10.3-1_kfreebsd-amd64.deb
Checksums-Sha256:
- f949b9ae9f7d8b8e1970b56b6baa2cec72d4262fad466e8c4d6b35d15d022513 1471396 r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
+ 67225fa743e1e8406622b9eda57b9e1a1359a8f065a803b22becda90f87ae6bb 1477774 r-bioc-limma_3.10.3-1_kfreebsd-amd64.deb
Files:
- 53191801931c1b6f0735d4823ce17a59 1471396 gnu-r optional r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
+ a45350e81719b590fdf1b1ebf760c681 1477774 gnu-r optional r-bioc-limma_3.10.3-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
+r-bioc-limma_3.10.3-1_kfreebsd-amd64.deb
────────────────────────────────────────
new debian package, version 2.0.
- size 1471396 bytes: control archive= 1548 bytes.
- 779 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1477774 bytes: control archive= 1574 bytes.
+ 780 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1621
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.0~)
+ Installed-Size: 1627
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -669,51 +738,52 @@ r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 969 2011-11-04 05:41 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1055 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6023 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5603 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 216 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 518 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10904 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197389 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3783 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 87742 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 737661 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-11-04 05:41 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1984 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1337 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 457755 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3277 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6221 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2392 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9458 2011-11-04 05:41 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2118 2011-11-04 05:40 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 329 2011-11-04 05:40 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2012-03-07 05:07 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 969 2012-03-07 05:07 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1057 2012-03-07 05:07 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6022 2012-03-07 05:07 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2012-03-07 05:07 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 05:07 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2012-03-07 05:07 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 05:07 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10904 2012-03-07 05:07 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 05:07 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198264 2012-03-07 05:07 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3774 2012-03-07 05:07 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 89361 2012-03-07 05:07 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2012-03-07 05:07 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2012-03-07 05:07 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2012-03-07 05:07 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737677 2012-03-07 05:07 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2012-03-07 05:07 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 2173 2012-03-07 05:07 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1337 2012-03-07 05:07 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 460904 2012-03-07 05:07 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3271 2012-03-07 05:07 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2012-03-07 05:07 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2012-03-07 05:07 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2012-03-07 05:07 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-07 05:07 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2012-03-07 05:07 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 05:07 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 05:07 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2302 2012-03-07 05:07 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 05:07 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -727,11 +797,11 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1320385134-22158/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1331096442-84873/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-amd64-UO3AMY
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
@@ -739,18 +809,18 @@ The following packages will be REMOVED:
cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
gettext-base* gfortran* gfortran-4.6* html2text* intltool-debian*
libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3* libdatrie1*
- libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6* libjpeg8*
- libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1* libncurses5-dev*
- libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0*
- libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
+ libffi5* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6*
+ libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
+ libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev*
libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 71 to remove and 7 not upgraded.
-After this operation, 120 MB disk space will be freed.
-(Reading database ... 15979 files and directories currently installed.)
+ ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 71 to remove and 0 not upgraded.
+After this operation, 119 MB disk space will be freed.
+(Reading database ... 15647 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -794,12 +864,14 @@ Removing libthai0 ...
Purging configuration files for libthai0 ...
Removing libdatrie1 ...
Purging configuration files for libdatrie1 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libffi5 ...
+Purging configuration files for libffi5 ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libgfortran3 ...
Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing libsm6 ...
@@ -856,8 +928,6 @@ Purging configuration files for libxml2 ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
Removing unzip ...
Purging configuration files for unzip ...
Removing x11-common ...
@@ -874,18 +944,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-amd64
-Build-Space: 5032
-Build-Time: 40
+Build-Space: 5086
+Build-Time: 35
Distribution: sid
-Install-Time: 100
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 328
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 158
-Source-Version: 3.10.0-1
-Space: 5032
+Package-Time: 431
+Source-Version: 3.10.3-1
+Space: 5086
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0541
-Build needed 00:02:38, 5032k disc space
-Signature with key 'D33FE1D8' requested:
+Finished at 20120307-0507
+Build needed 00:07:11, 5086k disc space
+Signature with key 'B22267E5' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index 518fc5a..6dedeed 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,4 +1,4 @@
-From buildd at finzi.debian.org Fri Nov 04 05:46:39 2011
+From buildd at finzi.debian.org Wed Mar 07 04:50:17 2012
Return-path: <buildd at finzi.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,42 +6,42 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
- id 1RMCbv-0007Tb-QX
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:46:39 +0000
+ id 1S58pM-0004MD-TV
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:50:17 +0000
Received: from finzi.debian.org ([206.12.19.111])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
- id 1RMCbt-0007Z8-Cr; Fri, 04 Nov 2011 05:46:38 +0000
+ id 1S58pL-0007QN-Gs; Wed, 07 Mar 2012 04:50:16 +0000
Received: from buildd by finzi.debian.org with local (Exim 4.72)
(envelope-from <buildd at finzi.debian.org>)
- id 1RMCbp-000Hnl-R1; Fri, 04 Nov 2011 05:46:33 +0000
-Message-Id: <E1RMCbp-000Hnl-R1 at finzi.debian.org>
+ id 1S58pI-000E3l-VZ; Wed, 07 Mar 2012 04:50:13 +0000
+Message-Id: <E1S58pI-000E3l-VZ at finzi.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Fri, 4 Nov 2011 05:46:33 +0000
+Date: Wed, 7 Mar 2012 04:50:12 +0000
From: buildd on finzi <buildd at finzi.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on kfreebsd-i386
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on kfreebsd-i386
(dist=sid)
-Key-Id: D859A500
+Key-Id: 76BB3C42
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (kfreebsd-i386) 04 Nov 2011 05:43 ║
+║ r-bioc-limma 3.10.3-1 (kfreebsd-i386) 07 Mar 2012 04:44 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: kfreebsd-i386
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://incoming.debian.org Release.gpg
Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
@@ -51,31 +51,26 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Get:2 http://mirror-ubc.debian.org sid InRelease [146 kB]
-Get:3 http://incoming.debian.org Release [1604 B]
-Get:4 http://mirror-ubc.debian.org sid/main Sources/DiffIndex [2038 B]
+Hit http://mirror-ubc.debian.org sid InRelease
+Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Translation-en
Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
-Get:5 http://mirror-ubc.debian.org sid/main kfreebsd-i386 Packages/DiffIndex [2038 B]
-Get:6 http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex [2023 B]
+Hit http://mirror-ubc.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
+Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
Hit http://mirror-ubc.debian.org sid/main TranslationIndex
Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
-Get:7 http://incoming.debian.org Sources [31.6 kB]
-Get:8 http://incoming.debian.org Packages [571 kB]
-Get:9 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
-Get:10 http://mirror-ubc.debian.org sid/main kfreebsd-i386 2011-11-04-0214.23.pdiff [21.0 kB]
-Get:11 http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 2011-11-04-0214.23.pdiff [272 B]
-Get:12 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
-Ign http://mirror-ubc.debian.org sid/contrib Translation-en
-Ign http://mirror-ubc.debian.org sid/non-free Translation-en
-Ign http://incoming.debian.org sid/contrib Translation-en
-Ign http://incoming.debian.org sid/non-free Translation-en
-Get:13 http://mirror-ubc.debian.org sid/main kfreebsd-i386 2011-11-04-0214.23.pdiff [21.0 kB]
+Hit http://mirror-ubc.debian.org sid/contrib Translation-en
+Hit http://mirror-ubc.debian.org sid/main Translation-en
+Hit http://mirror-ubc.debian.org sid/non-free Translation-en
+Hit http://incoming.debian.org sid/non-free Translation-en
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
Ign http://incoming.debian.org Translation-en
-Get:14 http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 2011-11-04-0214.23.pdiff [272 B]
-Fetched 789 kB in 7s (101 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -96,11 +91,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (635 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (574 kB/s)
Download complete and in download only mode
Check arch
@@ -114,60 +109,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-files: already installed (6.7)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
-findutils: already installed (4.4.2-1)
-freebsd-utils: already installed (8.2+ds2-5)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-2)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42.1-2)
+findutils: already installed (4.4.2-4)
+freebsd-utils: already installed (9.0-2)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-3)
+hostname: already installed (3.11)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.12)
-sysvinit: already installed (2.88dsf-13.12)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-5)
-util-linux: already installed (2.19.1-5)
+login: already installed (1:4.1.5-1)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-4)
+util-linux: already installed (2.20.1-4)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -176,107 +171,116 @@ Reading state information...
The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf libbz2-dev
- libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
- libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
- libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-doc gfortran-4.6-doc
libgfortran3-dbg ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp groff less
www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html
- tclreadline gvfs-bin
+ texlive-base texlive-latex-base texlive-generic-recommended
+ texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
+ texlive-latex-recommended texlive-latex-extra texinfo texi2html tclreadline
+ gvfs-bin
Recommended packages:
patchutils autopoint libglib2.0-data shared-mime-info x-ttcidfont-conf
xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
- liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
- libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
- ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded.
+Need to get 20.1 MB/53.2 MB of archives.
+After this operation, 110 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ sid/main r-base-core kfreebsd-i386 2.14.2-1 [20.1 MB]
+Get:3 http://mirror-ubc.debian.org/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 71 newly installed, 0 to remove and 7 not upgraded.
-Need to get 0 B/51.8 MB of archives.
-After this operation, 111 MB of additional disk space will be used.
+Fetched 20.1 MB in 1s (15.1 MB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 14032 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_kfreebsd-i386.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_kfreebsd-i386.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_kfreebsd-i386.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-i386.deb) ...
+(Reading database ... 11921 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_kfreebsd-i386.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-i386.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_kfreebsd-i386.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-i386.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_kfreebsd-i386.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_kfreebsd-i386.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-i386.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-i386.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-i386.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_kfreebsd-i386.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-i386.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-i386.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-i386.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-i386.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-i386.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-i386.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_kfreebsd-i386.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_kfreebsd-i386.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
Selecting previously unselected package libxext6.
@@ -286,15 +290,13 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-i386.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_kfreebsd-i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_kfreebsd-i386.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.09-2_kfreebsd-i386.deb) ...
+Unpacking file (from .../file_5.10-1_kfreebsd-i386.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-i386.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
Selecting previously unselected package gettext.
@@ -302,31 +304,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-i386.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_kfreebsd-i386.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_kfreebsd-i386.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_kfreebsd-i386.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_kfreebsd-i386.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-i386.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_kfreebsd-i386.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-i386.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_kfreebsd-i386.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_kfreebsd-i386.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-i386.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -334,125 +336,125 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-i386.deb)
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-i386.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_kfreebsd-i386.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_kfreebsd-i386.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_kfreebsd-i386.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_kfreebsd-i386.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../zip_3.0-4_kfreebsd-i386.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_kfreebsd-i386.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-i386.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_kfreebsd-i386.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-i386.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_kfreebsd-i386.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_kfreebsd-i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_kfreebsd-i386.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 kfreebsd-kernel-headers_0.57 libc0.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3
-Package versions: apt_0.8.15.9 autotools-dev_20110511.1 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.57 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.1_2.13-21 libc0.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgnutls26_2.12.12-1 libgomp1_4.6.2-3 libgpg-error0_1.10-1 libgssglue1_0.3-3.1 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-4 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libp11-kit0_0.7-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libsasl2-2_2.1.25.dfsg1-2 libsbuf0_8.2+ds1-4 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libtasn1-3_2.10-1 libtext-charwidth-perl_0.04-7 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 netbase_4.47 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 vim_2:7.3.346-1 vim-common_2:7.3.346-1 vim-runtime_2:7.3.346-1 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 kfreebsd-kernel-headers_0.77 libc0.1-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1
+Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 freebsd-utils_9.0-2 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-3 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0-2 kfreebsd-kernel-headers_0.77 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc0.1_2.13-27 libc0.1-dev_2.13-27 libcairo2_1.10.2-7 libcam6_9.0+ds1-1 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgeom1_9.0+ds1-1 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgnutls26_2.12.16-1 libgomp1_4.6.3-1 libgpg-error0_1.10-3 libgssglue1_0.3-4 libice6_2:1.0.7-2 libjail1_9.0+ds1-1 libjpeg8_8d-1 libjpeg8-dev_8d-1 libkiconv4_9.0+ds1-1 libkvm0_9.0+ds1-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.28-1.1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libncursesw5_5.9-4 libp11-kit0_0.11-3 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libprocps0_1:3.3.2-3 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libsasl2-2_2.1.25.dfsg1-4 libsbuf6_9.0+ds1-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtasn1-3_2.11-1 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.5-1 lsb-base_3.2+Debian30 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 netbase_4.47 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 psmisc_22.16-1 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -463,12 +465,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -478,18 +480,18 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture kfreebsd-i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3'
+
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -500,6 +502,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -510,47 +525,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3'
WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -562,18 +583,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-li
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -581,12 +604,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -595,31 +623,57 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../r-bioc-limma_3.10.0-1_kfreebsd-i386.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../r-bioc-limma_3.10.3-1_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0545
+Build finished at 20120307-0449
-r-bioc-limma_3.10.0-1_kfreebsd-i386.changes:
+r-bioc-limma_3.10.3-1_kfreebsd-i386.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-i386
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
@@ -627,35 +681,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
+ .
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 915161a2756b69d65a8ce0c91e68c6595241d8b6 1472518 r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
+ 3bcc23f2fbff65c9eca65d314d0b9855de9fbc9f 1477826 r-bioc-limma_3.10.3-1_kfreebsd-i386.deb
Checksums-Sha256:
- ff5d647d9c9080cf682394a799d7dc845c2ddf7218189cd2507ccf0362f88af6 1472518 r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
+ 490f870af56a874ba1f665615d708b8b83bf382f95712abfd3e5e2d3c61438a3 1477826 r-bioc-limma_3.10.3-1_kfreebsd-i386.deb
Files:
- f7db9a27b3d28e93256a4b28097aa89e 1472518 gnu-r optional r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
+ 16eef5e616e0d3073c0b81da769812ab 1477826 gnu-r optional r-bioc-limma_3.10.3-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
+r-bioc-limma_3.10.3-1_kfreebsd-i386.deb
───────────────────────────────────────
new debian package, version 2.0.
- size 1472518 bytes: control archive= 1544 bytes.
- 778 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1477826 bytes: control archive= 1581 bytes.
+ 779 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1618
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.0~)
+ Installed-Size: 1625
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -667,51 +730,52 @@ r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2011-11-04 05:45 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 967 2011-11-04 05:45 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1054 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6023 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5603 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 216 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 518 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197390 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3789 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 87742 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 737661 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-11-04 05:45 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1984 2011-11-04 05:45 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1348 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 457763 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3270 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6221 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2392 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9458 2011-11-04 05:45 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2118 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 329 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2012-03-07 04:48 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 967 2012-03-07 04:48 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1052 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6022 2012-03-07 04:49 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2012-03-07 04:49 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 04:49 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2012-03-07 04:49 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 04:49 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2012-03-07 04:49 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 04:49 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198260 2012-03-07 04:49 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3772 2012-03-07 04:49 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 89361 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737677 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2012-03-07 04:48 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 2173 2012-03-07 04:48 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1349 2012-03-07 04:49 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 460744 2012-03-07 04:49 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3259 2012-03-07 04:49 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2012-03-07 04:49 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2012-03-07 04:49 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2012-03-07 04:49 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-07 04:49 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2012-03-07 04:49 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 04:49 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 04:48 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2302 2012-03-07 04:48 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 04:48 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -725,11 +789,11 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1320385413-65390/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1331095495-50163/build/buildd-r-bioc-limma_3.10.3-1-kfreebsd-i386-Gx31Qi
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
@@ -737,18 +801,18 @@ The following packages will be REMOVED:
cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
gettext-base* gfortran* gfortran-4.6* html2text* intltool-debian*
libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3* libdatrie1*
- libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6* libjpeg8*
- libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1* libncurses5-dev*
- libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0*
- libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
+ libffi5* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6*
+ libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
+ libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev*
libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 71 to remove and 7 not upgraded.
-After this operation, 111 MB disk space will be freed.
-(Reading database ... 17718 files and directories currently installed.)
+ ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 71 to remove and 0 not upgraded.
+After this operation, 110 MB disk space will be freed.
+(Reading database ... 15656 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -792,12 +856,14 @@ Removing libthai0 ...
Purging configuration files for libthai0 ...
Removing libdatrie1 ...
Purging configuration files for libdatrie1 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libffi5 ...
+Purging configuration files for libffi5 ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libgfortran3 ...
Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing libsm6 ...
@@ -854,8 +920,6 @@ Purging configuration files for libxml2 ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
Removing unzip ...
Purging configuration files for unzip ...
Removing x11-common ...
@@ -872,18 +936,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-i386
-Build-Space: 5028
-Build-Time: 30
+Build-Space: 5082
+Build-Time: 36
Distribution: sid
-Install-Time: 90
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 203
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 140
-Source-Version: 3.10.0-1
-Space: 5028
+Package-Time: 261
+Source-Version: 3.10.3-1
+Space: 5082
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0545
-Build needed 00:02:20, 5028k disc space
-Signature with key 'D859A500' requested:
+Finished at 20120307-0449
+Build needed 00:04:21, 5082k disc space
+Signature with key '76BB3C42' requested:
diff --git a/mips.log b/mips.log
index c6a65a8..a281159 100644
--- a/mips.log
+++ b/mips.log
@@ -1,68 +1,69 @@
-From buildd2 at lucatelli.debian.org Fri Nov 04 16:46:50 2011
-Return-path: <buildd2 at lucatelli.debian.org>
+From buildd2 at corelli.debian.org Wed Mar 07 05:22:21 2012
+Return-path: <buildd2 at corelli.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=kokkonen.debian.org,
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
- id 1RMMuo-0005rQ-Ax
- for logs at buildd.debian.org; Fri, 04 Nov 2011 16:46:50 +0000
-Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
+ (Exim 4.72) (envelope-from <buildd2 at corelli.debian.org>)
+ id 1S59KO-0001Pp-OU
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 05:22:21 +0000
+Received: from corelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4489])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=lucatelli.debian.org,
- EMAIL=hostmaster at lucatelli.debian.org (verified)
+ CN=corelli.debian.org, EMAIL=hostmaster at corelli.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
- id 1RMMum-0006sG-V8
- for logs at buildd.debian.org; Fri, 04 Nov 2011 16:46:49 +0000
-Received: from buildd2 by lucatelli.debian.org with local (Exim 4.69)
- (envelope-from <buildd2 at lucatelli.debian.org>) id 1RMChd-0005Dg-L9
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:52:33 +0000
-From: buildd on lucatelli <buildd2 at lucatelli.debian.org>
+ (Exim 4.72) (envelope-from <buildd2 at corelli.debian.org>)
+ id 1S59KN-0007st-2K
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 05:22:19 +0000
+Received: from buildd2 by corelli.debian.org with local (Exim 4.72)
+ (envelope-from <buildd2 at corelli.debian.org>) id 1S59KK-0004AV-Gi
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 05:22:16 +0000
+Date: Wed, 07 Mar 2012 05:22:16 +0000
+Message-Id: <E1S59KK-0004AV-Gi at corelli.debian.org>
+From: buildd on corelli <buildd2 at corelli.debian.org>
To: logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on mips (dist=sid)
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on mips (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1RMChd-0005Dg-L9 at lucatelli.debian.org>
-Date: Fri, 04 Nov 2011 05:52:33 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on corelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (mips) 04 Nov 2011 05:40 ║
+║ r-bioc-limma 3.10.3-1 (mips) 07 Mar 2012 05:12 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: mips
-Get:1 http://mirror-ubc.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://mirror-ubc.debian.org unstable/main Sources [5890 kB]
+Get:1 http://mirror-ubc.debian.org unstable InRelease [197 kB]
+Get:2 http://incoming.debian.org unstable InRelease [197 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [6231 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1604 B]
-Get:6 http://incoming.debian.org unstable/main Sources [5890 kB]
-Get:7 http://mirror-ubc.debian.org unstable/contrib Sources [56.9 kB]
-Get:8 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
-Get:9 http://mirror-ubc.debian.org unstable/main mips Packages [7603 kB]
-Get:10 http://mirror-ubc.debian.org unstable/contrib mips Packages [55.8 kB]
+Get:5 http://incoming.debian.org Release [1616 B]
+Get:6 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:7 http://mirror-ubc.debian.org unstable/contrib Sources [55.0 kB]
+Get:8 http://mirror-ubc.debian.org unstable/non-free Sources [98.8 kB]
+Get:9 http://mirror-ubc.debian.org unstable/main mips Packages [5706 kB]
+Get:10 http://mirror-ubc.debian.org unstable/contrib mips Packages [37.3 kB]
Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
-Get:11 http://mirror-ubc.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
-Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
-Get:14 http://incoming.debian.org unstable/main mips Packages [7603 kB]
-Get:15 http://incoming.debian.org unstable/contrib mips Packages [55.8 kB]
+Get:11 http://mirror-ubc.debian.org unstable/main TranslationIndex [2154 B]
+Get:12 http://mirror-ubc.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:13 http://mirror-ubc.debian.org unstable/main Translation-en [3906 kB]
+Get:14 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:15 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:16 http://incoming.debian.org unstable/main mips Packages [5706 kB]
+Get:17 http://incoming.debian.org unstable/contrib mips Packages [37.3 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:17 http://incoming.debian.org Sources [31.6 kB]
-Get:18 http://incoming.debian.org Packages [571 kB]
+Get:18 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:19 http://incoming.debian.org Sources [63.2 kB]
+Get:20 http://incoming.debian.org Packages [861 kB]
+Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:22 http://incoming.debian.org unstable/main Translation-en [3906 kB]
Ign http://incoming.debian.org Translation-en
-Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 28.3 MB in 1min 44s (272 kB/s)
+Fetched 33.5 MB in 1min 32s (364 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,11 +84,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (836 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (840 kB/s)
Download complete and in download only mode
Check arch
@@ -101,60 +102,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-09-1)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42-1)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.10)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-7)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.26-2)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-1.2)
+mount: already installed (2.20.1-1.2)
+util-linux: already installed (2.20.1-1.2)
+libc6-dev: already installed (2.13-26)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -164,16 +165,16 @@ The following extra packages will be installed:
bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcc1
libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip
+ x11-common xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
@@ -182,213 +183,220 @@ Suggested packages:
gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 77 newly installed, 0 to remove and 26 not upgraded.
-Need to get 71.3 MB of archives.
-After this operation, 123 MB of additional disk space will be used.
-Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 mips 4.6.2-3 [26.2 kB]
-Get:2 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.2-3 [137 kB]
-Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.2-3 [69.5 kB]
-Get:4 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.2-3 [3760 kB]
-Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.2-3 [1724 kB]
-Get:6 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 mips 4.6.2-3 [6294 kB]
-Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.2-3 [4027 kB]
-Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 mips 4.6.2-3 [301 kB]
-Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-4 [35.3 kB]
-Get:10 http://mirror-ubc.debian.org/debian/ unstable/main liblzma5 mips 5.1.1alpha+20110809-3 [204 kB]
-Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-4 [227 kB]
-Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.8-1 [1565 kB]
-Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-5 [858 kB]
-Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-2 [104 kB]
-Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-3 [27.0 kB]
-Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7.2 [143 kB]
-Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.7-2 [421 kB]
-Get:18 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:19 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:20 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3 [286 kB]
-Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.2-3 [231 kB]
-Get:23 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-2 [50.6 kB]
-Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.23.8-1 [364 kB]
-Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.46-3 [183 kB]
-Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-3 [16.6 kB]
-Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-3 [22.3 kB]
-Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-3 [38.0 kB]
-Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
-Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-2 [858 kB]
-Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-3 [14.5 kB]
-Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-3 [9354 B]
-Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
-Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6.1 [952 kB]
-Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-2 [41.8 kB]
-Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
-Get:39 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3 [334 kB]
-Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.29.4-2 [434 kB]
-Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-4 [113 kB]
-Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-2 [28.2 kB]
-Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8c-2 [144 kB]
-Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-2 [190 kB]
-Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
-Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
-Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-2 [16.5 kB]
-Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
-Get:49 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.3 [206 kB]
-Get:50 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-6 [1152 kB]
-Get:51 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-2 [990 kB]
-Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.09-2 [249 kB]
-Get:53 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.09-2 [51.8 kB]
+ libstdc++6-4.6-dev zlib1g
+9 upgraded, 76 newly installed, 0 to remove and 35 not upgraded.
+Need to get 72.6 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 mips 4.6.3-1 [26.2 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.3-1 [139 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.3-1 [69.5 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.3-1 [3771 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.3-1 [1725 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 mips 4.6.3-1 [6309 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.3-1 [4045 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 mips 4.6.3-1 [301 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g mips 1:1.2.6.dfsg-2 [85.3 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.1-1 [36.7 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.10-1 [252 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-4 [227 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7.2 [143 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.8-1 [423 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3.1 [286 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.24.4-1 [362 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.47-1 [184 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-4 [16.8 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-4 [22.4 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.8-2 [41.3 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-4 [859 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.8-2 [16.1 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.8-2 [9934 B]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-7 [926 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libffi5 mips 3.0.10-3 [23.0 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.30.2-6 [1751 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-7 [859 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.4-2 [139 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.5-3 [28.1 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.3-1 [231 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-2 [50.6 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8d-1 [146 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.17-1 [43.7 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3.1 [334 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.29.4-2 [434 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-4 [113 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-2 [28.2 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.6-1 [191 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-2 [16.5 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 9.0.1 [207 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-6 [1152 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.1-1 [1027 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.10-1 [52.8 kB]
Get:54 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-5 [136 kB]
-Get:55 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
Get:56 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
Get:57 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-5 [2032 kB]
Get:58 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:59 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:60 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
-Get:61 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:62 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.2-3 [4365 kB]
-Get:63 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.1-3 [1132 B]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.3-1 [4376 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.2-4 [1136 B]
Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2.20110419-2 [203 kB]
Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-2 [243 kB]
-Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-7 [37.3 kB]
-Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8c-2 [257 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.6-1 [37.3 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8d-1 [258 kB]
Get:68 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.1-1 [4250 kB]
Get:69 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.1-1 [4908 kB]
-Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev mips 5.9-2 [71.9 kB]
-Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-2 [438 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev mips 5.9-4 [104 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-4 [406 kB]
Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-4 [318 kB]
-Get:75 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
-Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.46-3 [275 kB]
-Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-7 [271 kB]
-Get:78 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-7 [890 B]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.6.dfsg-2 [211 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.47-1 [276 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-8 [270 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-8 [890 B]
Get:79 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-4 [332 kB]
Get:80 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-5 [189 kB]
-Get:81 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.10-1 [1610 kB]
-Get:83 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.10-1 [1172 kB]
-Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.14.0-1 [18.6 MB]
-Get:85 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.11-1 [1613 kB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.11-1 [1173 kB]
+Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.14.2-1 [19.7 MB]
+Get:85 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 71.3 MB in 13s (5316 kB/s)
-(Reading database ... 10544 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-3_mips.deb) ...
+Fetched 72.6 MB in 17s (4075 kB/s)
+(Reading database ... 10667 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.2-12 (using .../libgomp1_4.6.3-1_mips.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-3_mips.deb) ...
+Preparing to replace gcc-4.6-base 4.6.2-12 (using .../gcc-4.6-base_4.6.3-1_mips.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.2-3) ...
-(Reading database ... 10545 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-3_mips.deb) ...
+Setting up gcc-4.6-base (4.6.3-1) ...
+(Reading database ... 10668 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.2-12 (using .../libgcc1_1%3a4.6.3-1_mips.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.2-3) ...
-(Reading database ... 10545 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-3_mips.deb) ...
+Setting up libgcc1 (1:4.6.3-1) ...
+(Reading database ... 10668 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.2-12 (using .../cpp-4.6_4.6.3-1_mips.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-3_mips.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.2-12 (using .../libstdc++6-4.6-dev_4.6.3-1_mips.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-3_mips.deb) ...
+Preparing to replace g++-4.6 4.6.2-12 (using .../g++-4.6_4.6.3-1_mips.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-3_mips.deb) ...
+Preparing to replace gcc-4.6 4.6.2-12 (using .../gcc-4.6_4.6.3-1_mips.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-3_mips.deb) ...
+Preparing to replace libstdc++6 4.6.2-12 (using .../libstdc++6_4.6.3-1_mips.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.2-3) ...
+Setting up libstdc++6 (4.6.3-1) ...
+(Reading database ... 10668 files and directories currently installed.)
+Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_mips.deb) ...
+Unpacking replacement zlib1g ...
+Setting up zlib1g (1:1.2.6.dfsg-2) ...
Selecting previously unselected package libpipeline1.
-(Reading database ... 10545 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mips.deb) ...
-Selecting previously unselected package liblzma5.
-Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mips.deb) ...
+(Reading database ... 10668 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mips.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_mips.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_mips.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mips.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mips.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mips.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mips.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_mips.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mips.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_mips.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mips.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_mips.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mips.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_mips.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mips.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_mips.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mips.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_mips.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mips.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_mips.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mips.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_mips.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_mips.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_mips.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mips.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_mips.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mips.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_mips.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mips.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_mips.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mips.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mips.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_mips.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_mips.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_mips.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_mips.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_mips.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_mips.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_mips.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mips.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_mips.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_mips.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_mips.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mips.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_mips.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_mips.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mips.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mips.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mips.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mips.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mips.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_mips.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mips.deb) ...
Selecting previously unselected package libxext6.
@@ -398,19 +406,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mips.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mips.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mips.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_mips.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mips.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_mips.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_mips.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_mips.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_mips.deb) ...
+Unpacking file (from .../archives/file_5.10-1_mips.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mips.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
Selecting previously unselected package gettext.
@@ -418,31 +424,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_mips.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_mips.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_mips.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mips.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_mips.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mips.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mips.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mips.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_mips.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mips.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_mips.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mips.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mips.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mips.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_mips.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mips.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_mips.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mips.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -450,138 +456,137 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mips.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mips.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_mips.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mips.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_mips.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mips.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_mips.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mips.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_mips.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mips.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_mips.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mips.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_mips.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mips.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_mips.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_mips.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_mips.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libgomp1 (4.6.2-3) ...
-Setting up cpp-4.6 (4.6.2-3) ...
-Setting up gcc-4.6 (4.6.2-3) ...
-Setting up libpipeline1 (1.2.0-4) ...
-Setting up liblzma5 (5.1.1alpha+20110809-3) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libgomp1 (4.6.3-1) ...
+Setting up cpp-4.6 (4.6.3-1) ...
+Setting up gcc-4.6 (4.6.3-1) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
-Setting up libstdc++6-4.6-dev (4.6.2-3) ...
-Setting up g++-4.6 (4.6.2-3) ...
+Setting up r-base-dev (2.14.2-1) ...
+Setting up libstdc++6-4.6-dev (4.6.3-1) ...
+Setting up g++-4.6 (4.6.3-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
-Toolchain package versions: binutils_2.21.90.20111004-2 dpkg-dev_1.16.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.8 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 3.2.0-0.bpo.1-octeon mips (mips64)
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-26 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.4-1
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6_2.13-26 libc6-dev_2.13-26 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.3+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.4-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-4 netbase_4.47 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -592,12 +597,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd2/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -606,14 +611,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture mips
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -621,9 +621,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -634,6 +634,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -644,10 +657,10 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -655,36 +668,42 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
-installing to /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/src'
+installing to /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -696,18 +715,20 @@ installing to /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -715,12 +736,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -729,67 +755,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ cd '/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_mips.deb'.
- dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../r-bioc-limma_3.10.0-1_mips.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (corelli) <buildd_mips-corelli2 at buildd.debian.org> >../r-bioc-limma_3.10.3-1_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0552
+Build finished at 20120307-0522
-r-bioc-limma_3.10.0-1_mips.changes:
+r-bioc-limma_3.10.3-1_mips.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mips
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
-Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org>
+Maintainer: mips Build Daemon (corelli) <buildd_mips-corelli2 at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 91c854d243f07a3ca8525d61533d2c8dc3a9a811 1469808 r-bioc-limma_3.10.0-1_mips.deb
+ 63dcf853a5867956e3aadec7b331ebca78f3ce5f 1474740 r-bioc-limma_3.10.3-1_mips.deb
Checksums-Sha256:
- 84c9d39332e7c5da319bba2a26ebe2638493c80a666fde6000bee12f46f9d69a 1469808 r-bioc-limma_3.10.0-1_mips.deb
+ 02fd5412d21c3ed0e4c198e5337f7a1141e8d208bdf2ca6eec651a4b49f24880 1474740 r-bioc-limma_3.10.3-1_mips.deb
Files:
- 4ffca6989ce4106a37e99bd88b4a043b 1469808 gnu-r optional r-bioc-limma_3.10.0-1_mips.deb
+ fed7f519488d4793c1eb6618e987edee 1474740 gnu-r optional r-bioc-limma_3.10.3-1_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_mips.deb
+r-bioc-limma_3.10.3-1_mips.deb
──────────────────────────────
new debian package, version 2.0.
- size 1469808 bytes: control archive= 1544 bytes.
- 767 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1474740 bytes: control archive= 1570 bytes.
+ 768 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1675
- Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
+ Installed-Size: 1681
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -801,51 +862,52 @@ r-bioc-limma_3.10.0-1_mips.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:51 ./
-drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:49 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 05:49 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2011-11-04 05:49 ./usr/lib/R/site-library/limma/NAMESPACE
--rwxr-xr-x root/root 1230 2011-11-04 05:49 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3787 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 383 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197383 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/limma.rdb
-drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 6221 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3285 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2392 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1351 2011-11-04 05:49 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 455940 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/limma.rdb
-drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-11-04 05:50 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34556 2011-11-04 05:50 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1984 2011-11-04 05:49 ./usr/lib/R/site-library/limma/NEWS.Rd
--rw-r--r-- root/root 969 2011-11-04 05:49 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 737661 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 673 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 87742 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2011-11-04 05:51 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9458 2011-11-04 05:50 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 2886 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 216 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1054 2011-11-04 05:49 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 518 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 5603 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 6023 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/Rd.rds
-drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 329 2011-11-04 05:47 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2118 2011-11-04 05:47 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 05:18 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 264 2012-03-07 05:18 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2302 2012-03-07 05:18 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2012-03-07 05:19 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 05:19 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2012-03-07 05:21 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 969 2012-03-07 05:19 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 1901 2012-03-07 05:19 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2012-03-07 05:19 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 05:20 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2012-03-07 05:20 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2012-03-07 05:20 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2012-03-07 05:20 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1350 2012-03-07 05:20 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 458605 2012-03-07 05:20 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3272 2012-03-07 05:20 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2012-03-07 05:20 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2012-03-07 05:20 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2012-03-07 05:19 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 198254 2012-03-07 05:19 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 383 2012-03-07 05:19 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3775 2012-03-07 05:19 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 216 2012-03-07 05:21 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 2886 2012-03-07 05:21 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5603 2012-03-07 05:21 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 6022 2012-03-07 05:20 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1054 2012-03-07 05:19 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 518 2012-03-07 05:21 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2012-03-07 05:21 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 89361 2012-03-07 05:19 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 737677 2012-03-07 05:19 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2012-03-07 05:19 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 673 2012-03-07 05:19 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2012-03-07 05:19 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 9458 2012-03-07 05:21 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 2173 2012-03-07 05:19 ./usr/lib/R/site-library/limma/NEWS.Rd
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -859,7 +921,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mips-sbuild-b5bbb0be-56f7-48bb-b5ee-eb569ab91352/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow
+Purging /var/lib/schroot/mount/sid-mips-sbuild-7fb8acfd-bd20-4418-8fb0-00d0ea702eba/build/buildd2-r-bioc-limma_3.10.3-1-mips-ohdEUL
Not cleaning session: cloned chroot in use
Can't open average time db /var/lib/sbuild/avg-build-times
Can't open average space db /var/lib/sbuild/avg-build-space
@@ -869,78 +931,193 @@ Can't open average space db /var/lib/sbuild/avg-build-space
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mips
-Build-Space: 5304
-Build-Time: 292
+Build-Space: 5336
+Build-Time: 224
Distribution: sid
-Install-Time: 276
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 195
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 731
-Source-Version: 3.10.0-1
-Space: 5304
+Package-Time: 566
+Source-Version: 3.10.3-1
+Space: 5336
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0552
-Build needed 00:12:11, 5304k disc space
-Signature with key 'FDFDA76A' requested:
-
-From buildd at phrixos.ayous.org Fri Nov 04 05:46:01 2011
-Return-path: <buildd at phrixos.ayous.org>
-Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
- helo=alius.ayous.org)
+Finished at 20120307-0522
+Build needed 00:09:26, 5336k disc space
+Signature with key 'B5319330' requested:
+
+From buildd at mayer.debian.org Wed Mar 07 06:07:33 2012
+Return-path: <buildd at mayer.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
- id 1RMCbH-0007MT-OE
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:46:01 +0000
-Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
- (envelope-from <buildd at phrixos.ayous.org>)
- id 1RMCbE-0007oP-Dp; Fri, 04 Nov 2011 05:45:56 +0000
-Date: Fri, 04 Nov 2011 05:45:56 +0000
-Message-Id: <E1RMCbE-0007oP-Dp at phrixos.ayous.org>
-From: buildd on phrixos <buildd at phrixos.ayous.org>
-To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on mipsel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1S5A29-00085g-CU
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:07:33 +0000
+Received: from mayer.debian.org ([140.211.166.78])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1S5A27-00020P-EJ
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:07:32 +0000
+Received: from buildd by mayer.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at mayer.debian.org>) id 1S5A25-0007NC-7p
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:07:29 +0000
+Date: Wed, 07 Mar 2012 06:07:29 +0000
+Message-Id: <E1S5A25-0007NC-7p at mayer.debian.org>
+From: buildd on mayer <buildd at mayer.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (mipsel) 04 Nov 2011 05:38 ║
+║ r-bioc-limma 3.10.3-1 (mipsel) 07 Mar 2012 06:02 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-4f696010-c1aa-4162-8960-af4b53592dfb/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14
-Start Time: 20111104-0538
-Get:1 http://incoming.debian.org unstable InRelease [146 kB]
-Get:2 http://mirror.ayous.org unstable InRelease [146 kB]
-Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:3 http://mirror.ayous.org unstable/main TranslationIndex [2045 B]
-Get:4 http://mirror.ayous.org unstable/main Sources [7421 kB]
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Hit http://debian.oregonstate.edu sid InRelease
+Hit http://debian.oregonstate.edu sid/main Sources
+Hit http://debian.oregonstate.edu sid/contrib Sources
+Hit http://debian.oregonstate.edu sid/main mipsel Packages
+Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
+Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
+Hit http://debian.oregonstate.edu sid/main TranslationIndex
+Hit http://debian.oregonstate.edu sid/contrib Translation-en
+Hit http://debian.oregonstate.edu sid/main Translation-en
+Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:5 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:6 http://incoming.debian.org Release.gpg [836 B]
-Get:7 http://incoming.debian.org unstable/main Sources [7421 kB]
-Get:8 http://mirror.ayous.org unstable/contrib Sources [67.4 kB]
-Get:9 http://mirror.ayous.org unstable/non-free Sources [124 kB]
-Get:10 http://mirror.ayous.org unstable/main mipsel Packages [9966 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [67.4 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [124 kB]
-Get:13 http://incoming.debian.org unstable/main mipsel Packages [9966 kB]
-Get:14 http://mirror.ayous.org unstable/contrib mipsel Packages [68.1 kB]
-Ign http://mirror.ayous.org unstable/contrib Translation-en
-Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [68.1 kB]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [36.6 kB]
-Get:18 http://incoming.debian.org Packages [875 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources
+Hit http://incoming.debian.org sid/contrib Sources
+Hit http://incoming.debian.org sid/main mipsel Packages
+Hit http://incoming.debian.org sid/contrib mipsel Packages
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Translation-en
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
Ign http://incoming.debian.org Translation-en
-Fetched 36.5 MB in 1min 3s (576 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -952,272 +1129,567 @@ Check APT
─────────
Checking available source versions...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Download source files with APT
──────────────────────────────
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 3s (289 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (698 kB/s)
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──────────
-** Using build dependencies supplied by package:
-Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+build-essential: already installed (11.5)
+fakeroot: already installed (1.18.2-1)
+Checking for dependency conflicts...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Installing positive dependencies:
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+Removing negative dependencies:
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+Checking correctness of dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Checking for already installed dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42.1-2)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.10)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-1.2)
+mount: already installed (2.20.1-1.2)
+util-linux: already installed (2.20.1-1.2)
+libc6-dev: already installed (2.13-27)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
-Checking for source dependency conflicts...
+Using default version 2.14.2-1
+Checking for dependency conflicts...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Installing positive dependencies: debhelper cdbs r-base-dev
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 77 newly installed, 0 to remove and 22 not upgraded.
-Need to get 71.1 MB of archives.
-After this operation, 123 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.2-3 [26.2 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.2-3 [136 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.2-3 [68.3 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.2-3 [3778 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.2-3 [1716 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.2-3 [6168 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.2-3 [4041 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.2-3 [295 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-4 [35.2 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main liblzma5 mipsel 5.1.1alpha+20110809-3 [204 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.8-1 [1561 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-5 [858 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-2 [103 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7.2 [142 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.7-2 [422 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.2-3 [230 kB]
-Get:23 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:24 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
-Get:25 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.23.8-1 [363 kB]
-Get:26 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
-Get:27 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
-Get:28 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
-Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
-Get:30 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
-Get:31 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-2 [858 kB]
-Get:32 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
-Get:33 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
-Get:34 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:35 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
-Get:36 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:37 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
-Get:38 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:39 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
-Get:40 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.29.4-2 [434 kB]
-Get:41 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
-Get:42 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
-Get:43 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
-Get:44 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-2 [191 kB]
-Get:45 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
-Get:46 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:47 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
-Get:48 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:49 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
-Get:50 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
-Get:51 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
-Get:52 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.09-2 [247 kB]
-Get:53 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.09-2 [52.0 kB]
-Get:54 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
-Get:55 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
-Get:56 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:57 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
-Get:58 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:59 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:60 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
-Get:61 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:62 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.2-3 [4378 kB]
-Get:63 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-3 [1134 B]
-Get:64 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
-Get:65 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
-Get:66 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-7 [37.9 kB]
-Get:67 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
-Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
-Get:69 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
-Get:70 http://mirror.ayous.org/debian/ unstable/main libtinfo-dev mipsel 5.9-2 [70.2 kB]
-Get:71 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-2 [435 kB]
-Get:72 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:73 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:74 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
-Get:75 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-Get:76 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
-Get:77 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-7 [270 kB]
-Get:78 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-7 [888 B]
-Get:79 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:80 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
-Get:81 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:82 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
-Get:83 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
-Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.14.0-1 [18.6 MB]
-Get:85 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
+ zlib1g-dev
+0 upgraded, 73 newly installed, 0 to remove and 20 not upgraded.
+Need to get 19.7 MB/55.5 MB of archives.
+After this operation, 120 MB of additional disk space will be used.
+Get:1 http://debian.oregonstate.edu/debian/ sid/main r-base-core mipsel 2.14.2-1 [19.7 MB]
+Get:2 http://debian.oregonstate.edu/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 71.1 MB in 45s (1572 kB/s)
-(Reading database ... 10569 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-3_mipsel.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-3_mipsel.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.2-3) ...
-(Reading database ... 10570 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-3_mipsel.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.2-3) ...
-(Reading database ... 10570 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-3_mipsel.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.2-3) ...
+Fetched 19.7 MB in 2s (9562 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10570 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mipsel.deb) ...
-Selecting previously unselected package liblzma5.
-Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mipsel.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-4_mipsel.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mipsel.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mipsel.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mipsel.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mipsel.deb) ...
+(Reading database ... 11108 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_mipsel.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_mipsel.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mipsel.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_mipsel.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mipsel.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_mipsel.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_mipsel.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mipsel.deb) ...
-Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mipsel.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_mipsel.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mipsel.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_mipsel.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mipsel.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_mipsel.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_mipsel.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_mipsel.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mipsel.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_mipsel.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mipsel.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_mipsel.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_mipsel.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mipsel.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mipsel.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_mipsel.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_mipsel.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_mipsel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_mipsel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_mipsel.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_mipsel.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_mipsel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_mipsel.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_mipsel.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_mipsel.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mipsel.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_mipsel.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_mipsel.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mipsel.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mipsel.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mipsel.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mipsel.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_mipsel.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mipsel.deb) ...
Selecting previously unselected package libxext6.
@@ -1226,20 +1698,16 @@ Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mipsel.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mipsel.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mipsel.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mipsel.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_mipsel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_mipsel.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_mipsel.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.09-2_mipsel.deb) ...
+Unpacking file (from .../file_5.10-1_mipsel.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mipsel.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
Selecting previously unselected package gettext.
@@ -1247,31 +1715,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_mipsel.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_mipsel.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_mipsel.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mipsel.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_mipsel.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mipsel.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mipsel.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mipsel.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_mipsel.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mipsel.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_mipsel.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mipsel.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mipsel.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mipsel.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_mipsel.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mipsel.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_mipsel.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -1279,134 +1747,199 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mipsel.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_mipsel.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mipsel.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_mipsel.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mipsel.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_mipsel.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mipsel.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_mipsel.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mipsel.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_mipsel.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mipsel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_mipsel.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mipsel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_mipsel.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_mipsel.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_mipsel.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libgomp1 (4.6.2-3) ...
-Setting up cpp-4.6 (4.6.2-3) ...
-Setting up gcc-4.6 (4.6.2-3) ...
-Setting up libpipeline1 (1.2.0-4) ...
-Setting up liblzma5 (5.1.1alpha+20110809-3) ...
-Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
-Setting up libstdc++6-4.6-dev (4.6.2-3) ...
-Setting up g++-4.6 (4.6.2-3) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
-Toolchain package versions: libc6-dev_2.13-21 dpkg-dev_1.16.1.1 linux-libc-dev_3.0.0-5 gcc-4.6_4.6.2-3 g++-4.6_4.6.2-3 binutils_2.21.90.20111004-2 libstdc++6-4.6-dev_4.6.2-3 libstdc++6_4.6.2-3
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+Checking correctness of dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.4-1
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dmsetup_2:1.02.67-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-3 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdevmapper1.02.1_2:1.02.67-2 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-3 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libprocps0_1:3.3.2-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libudev0_175-3.1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.4-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 module-init-tools_3.16-1 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 udev_175-3.1 unzip_6.0-5 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1416,13 +1949,49 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -1431,19 +2000,55 @@ Check disc space
dpkg-buildpackage
─────────────────
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture mipsel
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1454,6 +2059,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -1464,10 +2082,10 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1475,36 +2093,42 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
- /usr/bin/fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
+ fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -1516,18 +2140,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.1
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -1535,12 +2161,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -1549,67 +2180,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-limma_3.10.0-1_mipsel.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../r-bioc-limma_3.10.3-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0545
+Build finished at 20120307-0606
-r-bioc-limma_3.10.0-1_mipsel.changes:
+r-bioc-limma_3.10.3-1_mipsel.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 627948648393c18bc0462b41103a2a9aca17e70a 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
+ 481412812c83e1f08fdd33f7f5a2feabc972c3e6 1473698 r-bioc-limma_3.10.3-1_mipsel.deb
Checksums-Sha256:
- a972b874ff9410f0f4afebf824de0e7212871f14652938f8814b5ef972211445 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
+ b5835ee2a9aa2aa1d3a341902f1d5c9f63c95bf12ad9e5ffee322948964fb29a 1473698 r-bioc-limma_3.10.3-1_mipsel.deb
Files:
- a591488e1d766bdc6fb0dd7957c0f539 1469010 gnu-r optional r-bioc-limma_3.10.0-1_mipsel.deb
+ d11b0c0b5d0de907207bbd47cda82e08 1473698 gnu-r optional r-bioc-limma_3.10.3-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_mipsel.deb
+r-bioc-limma_3.10.3-1_mipsel.deb
────────────────────────────────
new debian package, version 2.0.
- size 1469010 bytes: control archive= 1539 bytes.
- 769 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1473698 bytes: control archive= 1569 bytes.
+ 770 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1674
- Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
+ Installed-Size: 1681
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -1621,51 +2287,52 @@ r-bioc-limma_3.10.0-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/
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+-rw-r--r-- root/root 9458 2012-03-07 06:06 ./usr/lib/R/site-library/limma/INDEX
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+-rw-r--r-- root/root 2302 2012-03-07 06:04 ./usr/share/doc/r-bioc-limma/copyright
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┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1674,9 +2341,354 @@ drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/M
Built successfully
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-Not removing build depends: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
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+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
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+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
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+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
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+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
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+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
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+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
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+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
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+I: This option will be removed in the future; please update your configuration
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+I: This option will be removed in the future; please update your configuration
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+I: This option will be removed in the future; please update your configuration
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+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
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+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
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+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
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+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
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+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mipsel
+Build-Space: 5332
+Build-Time: 115
+Distribution: sid
+Install-Time: 112
+Job: r-bioc-limma_3.10.3-1
+Package: r-bioc-limma
+Package-Time: 261
+Source-Version: 3.10.3-1
+Space: 5332
+Status: successful
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0545
-Build needed 00:07:38, 5304k disc space
+Finished at 20120307-0606
+Build needed 00:04:21, 5332k disc space
+Signature with key '8C9FAB20' requested:
diff --git a/mipsel.log b/mipsel.log
index f846dba..13224dc 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,59 +1,174 @@
-From buildd at phrixos.ayous.org Fri Nov 04 05:46:01 2011
-Return-path: <buildd at phrixos.ayous.org>
-Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
- helo=alius.ayous.org)
+From buildd at mayer.debian.org Wed Mar 07 06:07:33 2012
+Return-path: <buildd at mayer.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
- id 1RMCbH-0007MT-OE
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:46:01 +0000
-Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
- (envelope-from <buildd at phrixos.ayous.org>)
- id 1RMCbE-0007oP-Dp; Fri, 04 Nov 2011 05:45:56 +0000
-Date: Fri, 04 Nov 2011 05:45:56 +0000
-Message-Id: <E1RMCbE-0007oP-Dp at phrixos.ayous.org>
-From: buildd on phrixos <buildd at phrixos.ayous.org>
-To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on mipsel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1S5A29-00085g-CU
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:07:33 +0000
+Received: from mayer.debian.org ([140.211.166.78])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
+ id 1S5A27-00020P-EJ
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:07:32 +0000
+Received: from buildd by mayer.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at mayer.debian.org>) id 1S5A25-0007NC-7p
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 06:07:29 +0000
+Date: Wed, 07 Mar 2012 06:07:29 +0000
+Message-Id: <E1S5A25-0007NC-7p at mayer.debian.org>
+From: buildd on mayer <buildd at mayer.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (mipsel) 04 Nov 2011 05:38 ║
+║ r-bioc-limma 3.10.3-1 (mipsel) 07 Mar 2012 06:02 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-4f696010-c1aa-4162-8960-af4b53592dfb/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14
-Start Time: 20111104-0538
-Get:1 http://incoming.debian.org unstable InRelease [146 kB]
-Get:2 http://mirror.ayous.org unstable InRelease [146 kB]
-Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:3 http://mirror.ayous.org unstable/main TranslationIndex [2045 B]
-Get:4 http://mirror.ayous.org unstable/main Sources [7421 kB]
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Hit http://debian.oregonstate.edu sid InRelease
+Hit http://debian.oregonstate.edu sid/main Sources
+Hit http://debian.oregonstate.edu sid/contrib Sources
+Hit http://debian.oregonstate.edu sid/main mipsel Packages
+Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
+Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
+Hit http://debian.oregonstate.edu sid/main TranslationIndex
+Hit http://debian.oregonstate.edu sid/contrib Translation-en
+Hit http://debian.oregonstate.edu sid/main Translation-en
+Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:5 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:6 http://incoming.debian.org Release.gpg [836 B]
-Get:7 http://incoming.debian.org unstable/main Sources [7421 kB]
-Get:8 http://mirror.ayous.org unstable/contrib Sources [67.4 kB]
-Get:9 http://mirror.ayous.org unstable/non-free Sources [124 kB]
-Get:10 http://mirror.ayous.org unstable/main mipsel Packages [9966 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [67.4 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [124 kB]
-Get:13 http://incoming.debian.org unstable/main mipsel Packages [9966 kB]
-Get:14 http://mirror.ayous.org unstable/contrib mipsel Packages [68.1 kB]
-Ign http://mirror.ayous.org unstable/contrib Translation-en
-Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [68.1 kB]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [36.6 kB]
-Get:18 http://incoming.debian.org Packages [875 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources
+Hit http://incoming.debian.org sid/contrib Sources
+Hit http://incoming.debian.org sid/main mipsel Packages
+Hit http://incoming.debian.org sid/contrib mipsel Packages
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Translation-en
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
Ign http://incoming.debian.org Translation-en
-Fetched 36.5 MB in 1min 3s (576 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -65,272 +180,567 @@ Check APT
─────────
Checking available source versions...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Download source files with APT
──────────────────────────────
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 3s (289 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 1s (698 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+build-essential: already installed (11.5)
+fakeroot: already installed (1.18.2-1)
+Checking for dependency conflicts...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Installing positive dependencies:
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+Removing negative dependencies:
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+Checking correctness of dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Checking for already installed dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42.1-2)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.10)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-1.2)
+mount: already installed (2.20.1-1.2)
+util-linux: already installed (2.20.1-1.2)
+libc6-dev: already installed (2.13-27)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
-Checking for source dependency conflicts...
+Using default version 2.14.2-1
+Checking for dependency conflicts...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Installing positive dependencies: debhelper cdbs r-base-dev
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 77 newly installed, 0 to remove and 22 not upgraded.
-Need to get 71.1 MB of archives.
-After this operation, 123 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.2-3 [26.2 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.2-3 [136 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.2-3 [68.3 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.2-3 [3778 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.2-3 [1716 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.2-3 [6168 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.2-3 [4041 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.2-3 [295 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-4 [35.2 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main liblzma5 mipsel 5.1.1alpha+20110809-3 [204 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.8-1 [1561 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-5 [858 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-2 [103 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7.2 [142 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.7-2 [422 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.2-3 [230 kB]
-Get:23 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:24 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
-Get:25 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.23.8-1 [363 kB]
-Get:26 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
-Get:27 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
-Get:28 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
-Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
-Get:30 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
-Get:31 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-2 [858 kB]
-Get:32 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
-Get:33 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
-Get:34 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:35 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
-Get:36 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:37 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
-Get:38 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:39 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
-Get:40 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.29.4-2 [434 kB]
-Get:41 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
-Get:42 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
-Get:43 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
-Get:44 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-2 [191 kB]
-Get:45 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
-Get:46 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:47 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
-Get:48 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:49 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
-Get:50 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
-Get:51 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
-Get:52 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.09-2 [247 kB]
-Get:53 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.09-2 [52.0 kB]
-Get:54 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
-Get:55 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
-Get:56 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:57 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
-Get:58 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:59 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:60 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
-Get:61 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:62 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.2-3 [4378 kB]
-Get:63 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-3 [1134 B]
-Get:64 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
-Get:65 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
-Get:66 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-7 [37.9 kB]
-Get:67 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
-Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
-Get:69 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
-Get:70 http://mirror.ayous.org/debian/ unstable/main libtinfo-dev mipsel 5.9-2 [70.2 kB]
-Get:71 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-2 [435 kB]
-Get:72 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:73 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:74 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
-Get:75 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-Get:76 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
-Get:77 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-7 [270 kB]
-Get:78 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-7 [888 B]
-Get:79 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:80 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
-Get:81 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:82 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
-Get:83 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
-Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.14.0-1 [18.6 MB]
-Get:85 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
+ zlib1g-dev
+0 upgraded, 73 newly installed, 0 to remove and 20 not upgraded.
+Need to get 19.7 MB/55.5 MB of archives.
+After this operation, 120 MB of additional disk space will be used.
+Get:1 http://debian.oregonstate.edu/debian/ sid/main r-base-core mipsel 2.14.2-1 [19.7 MB]
+Get:2 http://debian.oregonstate.edu/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 71.1 MB in 45s (1572 kB/s)
-(Reading database ... 10569 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-3_mipsel.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-3_mipsel.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.2-3) ...
-(Reading database ... 10570 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-3_mipsel.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.2-3) ...
-(Reading database ... 10570 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-3_mipsel.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-3_mipsel.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.2-3) ...
+Fetched 19.7 MB in 2s (9562 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10570 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mipsel.deb) ...
-Selecting previously unselected package liblzma5.
-Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mipsel.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-4_mipsel.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mipsel.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mipsel.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mipsel.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mipsel.deb) ...
+(Reading database ... 11108 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_mipsel.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_mipsel.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mipsel.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_mipsel.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mipsel.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_mipsel.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_mipsel.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mipsel.deb) ...
-Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mipsel.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_mipsel.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mipsel.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_mipsel.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mipsel.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_mipsel.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_mipsel.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_mipsel.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mipsel.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_mipsel.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mipsel.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_mipsel.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_mipsel.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mipsel.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mipsel.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_mipsel.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_mipsel.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_mipsel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_mipsel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_mipsel.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_mipsel.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_mipsel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_mipsel.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_mipsel.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_mipsel.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mipsel.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_mipsel.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_mipsel.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mipsel.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mipsel.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mipsel.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mipsel.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_mipsel.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mipsel.deb) ...
Selecting previously unselected package libxext6.
@@ -339,20 +749,16 @@ Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mipsel.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mipsel.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mipsel.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mipsel.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_mipsel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_mipsel.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_mipsel.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.09-2_mipsel.deb) ...
+Unpacking file (from .../file_5.10-1_mipsel.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mipsel.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
Selecting previously unselected package gettext.
@@ -360,31 +766,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_mipsel.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_mipsel.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_mipsel.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mipsel.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_mipsel.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mipsel.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mipsel.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mipsel.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_mipsel.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mipsel.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_mipsel.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mipsel.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mipsel.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mipsel.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_mipsel.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mipsel.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_mipsel.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -392,134 +798,199 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mipsel.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_mipsel.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mipsel.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_mipsel.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mipsel.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_mipsel.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mipsel.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_mipsel.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mipsel.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_mipsel.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mipsel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_mipsel.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mipsel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_mipsel.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_mipsel.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_mipsel.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libgomp1 (4.6.2-3) ...
-Setting up cpp-4.6 (4.6.2-3) ...
-Setting up gcc-4.6 (4.6.2-3) ...
-Setting up libpipeline1 (1.2.0-4) ...
-Setting up liblzma5 (5.1.1alpha+20110809-3) ...
-Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
-Setting up libstdc++6-4.6-dev (4.6.2-3) ...
-Setting up g++-4.6 (4.6.2-3) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
-Toolchain package versions: libc6-dev_2.13-21 dpkg-dev_1.16.1.1 linux-libc-dev_3.0.0-5 gcc-4.6_4.6.2-3 g++-4.6_4.6.2-3 binutils_2.21.90.20111004-2 libstdc++6-4.6-dev_4.6.2-3 libstdc++6_4.6.2-3
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+Checking correctness of dependencies...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.4-1
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dmsetup_2:1.02.67-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-3 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdevmapper1.02.1_2:1.02.67-2 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-3 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libprocps0_1:3.3.2-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libudev0_175-3.1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.4-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 module-init-tools_3.16-1 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 udev_175-3.1 unzip_6.0-5 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -529,13 +1000,49 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -544,19 +1051,55 @@ Check disc space
dpkg-buildpackage
─────────────────
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture mipsel
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -567,6 +1110,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -577,10 +1133,10 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -588,36 +1144,42 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
- /usr/bin/fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
+ fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -629,18 +1191,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.1
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -648,12 +1212,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -662,67 +1231,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-limma_3.10.0-1_mipsel.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../r-bioc-limma_3.10.3-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0545
+Build finished at 20120307-0606
-r-bioc-limma_3.10.0-1_mipsel.changes:
+r-bioc-limma_3.10.3-1_mipsel.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
+ .
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 627948648393c18bc0462b41103a2a9aca17e70a 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
+ 481412812c83e1f08fdd33f7f5a2feabc972c3e6 1473698 r-bioc-limma_3.10.3-1_mipsel.deb
Checksums-Sha256:
- a972b874ff9410f0f4afebf824de0e7212871f14652938f8814b5ef972211445 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
+ b5835ee2a9aa2aa1d3a341902f1d5c9f63c95bf12ad9e5ffee322948964fb29a 1473698 r-bioc-limma_3.10.3-1_mipsel.deb
Files:
- a591488e1d766bdc6fb0dd7957c0f539 1469010 gnu-r optional r-bioc-limma_3.10.0-1_mipsel.deb
+ d11b0c0b5d0de907207bbd47cda82e08 1473698 gnu-r optional r-bioc-limma_3.10.3-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_mipsel.deb
+r-bioc-limma_3.10.3-1_mipsel.deb
────────────────────────────────
new debian package, version 2.0.
- size 1469010 bytes: control archive= 1539 bytes.
- 769 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1473698 bytes: control archive= 1569 bytes.
+ 770 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1674
- Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
+ Installed-Size: 1681
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -734,51 +1338,52 @@ r-bioc-limma_3.10.0-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/
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+-rw-r--r-- root/root 9458 2012-03-07 06:06 ./usr/lib/R/site-library/limma/INDEX
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+-rw-r--r-- root/root 2302 2012-03-07 06:04 ./usr/share/doc/r-bioc-limma/copyright
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┌──────────────────────────────────────────────────────────────────────────────┐
@@ -787,9 +1392,354 @@ drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/M
Built successfully
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-Not removing build depends: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-9712b38b-1667-4959-b9f7-703d458fdd7b/build/buildd-r-bioc-limma_3.10.3-1-mipsel-iphN8c
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+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
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+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
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+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
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+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
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+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
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+I: This option will be removed in the future; please update your configuration
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+I: This option will be removed in the future; please update your configuration
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+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
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+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
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+I: This option will be removed in the future; please update your configuration
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+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
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+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
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+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [wheezy-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [wheezy-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [wheezy-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-mipsel-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-mipsel-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-mipsel-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mipsel
+Build-Space: 5332
+Build-Time: 115
+Distribution: sid
+Install-Time: 112
+Job: r-bioc-limma_3.10.3-1
+Package: r-bioc-limma
+Package-Time: 261
+Source-Version: 3.10.3-1
+Space: 5332
+Status: successful
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0545
-Build needed 00:07:38, 5304k disc space
+Finished at 20120307-0606
+Build needed 00:04:21, 5332k disc space
+Signature with key '8C9FAB20' requested:
diff --git a/powerpc.log b/powerpc.log
index 14d6190..6f13bef 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,29 +1,29 @@
-From buildd at praetorius.debian.org Fri Nov 04 05:42:01 2011
+From buildd at praetorius.debian.org Wed Mar 07 04:46:51 2012
Return-path: <buildd at praetorius.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at praetorius.debian.org>)
- id 1RMCXQ-0006u0-Sz
- for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:01 +0000
+ id 1S58m2-00042Q-OD
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:46:51 +0000
Received: from [2001:6b0:e:2a18:214:5eff:fe97:268a]
(helo=praetorius.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=praetorius.debian.org,
EMAIL=hostmaster at praetorius.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at praetorius.debian.org>)
- id 1RMCXP-0001LD-Ou; Fri, 04 Nov 2011 05:42:00 +0000
+ id 1S58m1-0007CK-J8; Wed, 07 Mar 2012 04:46:49 +0000
Received: from buildd by praetorius.debian.org with local (Exim 4.72)
(envelope-from <buildd at praetorius.debian.org>)
- id 1RMCXO-0004De-Lx; Fri, 04 Nov 2011 05:41:58 +0000
-Date: Fri, 04 Nov 2011 05:41:58 +0000
-Message-Id: <E1RMCXO-0004De-Lx at praetorius.debian.org>
+ id 1S58m0-00089P-NZ; Wed, 07 Mar 2012 04:46:48 +0000
+Date: Wed, 07 Mar 2012 04:46:48 +0000
+Message-Id: <E1S58m0-00089P-NZ at praetorius.debian.org>
From: buildd on praetorius <buildd at praetorius.debian.org>
To: wouter at debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on powerpc
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on powerpc
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
@@ -32,38 +32,40 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on praetorius.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (powerpc) 04 Nov 2011 05:38 ║
+║ r-bioc-limma 3.10.3-1 (powerpc) 07 Mar 2012 04:42 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: powerpc
-Get:1 http://ftp.se.debian.org unstable InRelease [146 kB]
-Get:2 http://ftp.se.debian.org unstable/main Sources [5890 kB]
-Get:3 http://incoming.debian.org unstable InRelease [146 kB]
-Get:4 http://ftp.se.debian.org unstable/contrib Sources [56.9 kB]
-Get:5 http://ftp.se.debian.org unstable/non-free Sources [103 kB]
-Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [7704 kB]
-Ign http://incoming.debian.org InRelease
-Get:7 http://ftp.se.debian.org unstable/contrib powerpc Packages [55.5 kB]
+Get:1 http://ftp.se.debian.org unstable InRelease [197 kB]
+Get:2 http://ftp.se.debian.org unstable/main Sources [6225 kB]
+Get:3 http://incoming.debian.org unstable InRelease [197 kB]
+Get:4 http://ftp.se.debian.org unstable/contrib Sources [55.0 kB]
+Get:5 http://ftp.se.debian.org unstable/non-free Sources [98.5 kB]
+Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [5806 kB]
+Get:7 http://ftp.se.debian.org unstable/contrib powerpc Packages [37.0 kB]
Ign http://ftp.se.debian.org unstable/contrib TranslationIndex
-Get:8 http://ftp.se.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://ftp.se.debian.org unstable/contrib Translation-en
-Get:9 http://incoming.debian.org Release.gpg [836 B]
-Get:10 http://incoming.debian.org unstable/main Sources [5890 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
-Get:13 http://incoming.debian.org unstable/main powerpc Packages [7704 kB]
-Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [55.5 kB]
+Get:8 http://ftp.se.debian.org unstable/main TranslationIndex [2154 B]
+Get:9 http://ftp.se.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:10 http://ftp.se.debian.org unstable/main Translation-en [3906 kB]
+Ign http://incoming.debian.org InRelease
+Get:11 http://incoming.debian.org Release.gpg [836 B]
+Get:12 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:15 http://incoming.debian.org unstable/main powerpc Packages [5808 kB]
+Get:16 http://incoming.debian.org unstable/contrib powerpc Packages [37.0 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [31.6 kB]
-Get:18 http://incoming.debian.org Packages [571 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:17 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:18 http://incoming.debian.org Release [1616 B]
+Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:20 http://incoming.debian.org unstable/main Translation-en [3906 kB]
+Get:21 http://incoming.debian.org Sources [64.3 kB]
+Get:22 http://incoming.debian.org Packages [853 kB]
Ign http://incoming.debian.org Translation-en
-Fetched 28.5 MB in 18s (1580 kB/s)
+Fetched 33.7 MB in 28s (1178 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +86,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (564 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 2s (484 kB/s)
Download complete and in download only mode
Check arch
@@ -102,95 +104,102 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
+debianutils: already installed (4.1)
diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42-1)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.10)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.12)
-sysvinit: already installed (2.88dsf-13.12)
-tar: already installed (1.26-2)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-18)
+sysvinit: already installed (2.88dsf-18)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-1.2)
+mount: already installed (2.20.1-1.2)
+util-linux: already installed (2.20.1-1.2)
+libc6-dev: already installed (2.13-24)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ binutils-gold gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
@@ -198,159 +207,202 @@ The following NEW packages will be installed:
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
-Need to get 55.1 MB of archives.
-After this operation, 119 MB of additional disk space will be used.
-Get:1 http://ftp.se.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-4 [37.2 kB]
-Get:2 http://ftp.se.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-4 [222 kB]
-Get:3 http://ftp.se.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.8-1 [1609 kB]
-Get:4 http://ftp.se.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-5 [837 kB]
-Get:5 http://ftp.se.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-2 [114 kB]
-Get:6 http://ftp.se.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-3 [26.5 kB]
-Get:7 http://ftp.se.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7.2 [138 kB]
-Get:8 http://ftp.se.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.7-2 [420 kB]
-Get:9 http://ftp.se.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:10 http://ftp.se.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:11 http://ftp.se.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:12 http://ftp.se.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3 [280 kB]
-Get:13 http://ftp.se.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.2-3 [281 kB]
-Get:14 http://ftp.se.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:15 http://ftp.se.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
-Get:16 http://ftp.se.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.23.8-1 [365 kB]
-Get:17 http://ftp.se.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.46-3 [184 kB]
-Get:18 http://ftp.se.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-3 [16.8 kB]
-Get:19 http://ftp.se.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-3 [22.8 kB]
-Get:20 http://ftp.se.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-3 [41.1 kB]
-Get:21 http://ftp.se.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
-Get:22 http://ftp.se.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-2 [868 kB]
-Get:23 http://ftp.se.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-3 [15.4 kB]
-Get:24 http://ftp.se.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-3 [9456 B]
-Get:25 http://ftp.se.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
-Get:26 http://ftp.se.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6.1 [937 kB]
-Get:27 http://ftp.se.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:28 http://ftp.se.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-2 [41.8 kB]
-Get:29 http://ftp.se.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
-Get:30 http://ftp.se.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-3 [334 kB]
-Get:31 http://ftp.se.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.29.4-2 [447 kB]
-Get:32 http://ftp.se.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-4 [113 kB]
-Get:33 http://ftp.se.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-2 [28.6 kB]
-Get:34 http://ftp.se.debian.org/debian/ unstable/main libjpeg8 powerpc 8c-2 [129 kB]
-Get:35 http://ftp.se.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-2 [199 kB]
-Get:36 http://ftp.se.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
-Get:37 http://ftp.se.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
-Get:38 http://ftp.se.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-2 [16.5 kB]
-Get:39 http://ftp.se.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
-Get:40 http://ftp.se.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.3 [207 kB]
-Get:41 http://ftp.se.debian.org/debian/ unstable/main groff-base powerpc 1.21-6 [1179 kB]
-Get:42 http://ftp.se.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-2 [1013 kB]
-Get:43 http://ftp.se.debian.org/debian/ unstable/main libmagic1 powerpc 5.09-2 [253 kB]
-Get:44 http://ftp.se.debian.org/debian/ unstable/main file powerpc 5.09-2 [52.0 kB]
-Get:45 http://ftp.se.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-5 [132 kB]
-Get:46 http://ftp.se.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
-Get:47 http://ftp.se.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:48 http://ftp.se.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-5 [2036 kB]
-Get:49 http://ftp.se.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:50 http://ftp.se.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:51 http://ftp.se.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
-Get:52 http://ftp.se.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:53 http://ftp.se.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.2-3 [5264 kB]
-Get:54 http://ftp.se.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.1-3 [1134 B]
-Get:55 http://ftp.se.debian.org/debian/ unstable/main libblas3gf powerpc 1.2.20110419-2 [192 kB]
-Get:56 http://ftp.se.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-2 [206 kB]
-Get:57 http://ftp.se.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-7 [34.3 kB]
-Get:58 http://ftp.se.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8c-2 [234 kB]
-Get:59 http://ftp.se.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.1-1 [3956 kB]
-Get:60 http://ftp.se.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.1-1 [4261 kB]
-Get:61 http://ftp.se.debian.org/debian/ unstable/main libtinfo-dev powerpc 5.9-2 [74.1 kB]
-Get:62 http://ftp.se.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-2 [422 kB]
-Get:63 http://ftp.se.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
-Get:64 http://ftp.se.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
-Get:65 http://ftp.se.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-4 [313 kB]
-Get:66 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
-Get:67 http://ftp.se.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.46-3 [265 kB]
-Get:68 http://ftp.se.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-7 [258 kB]
-Get:69 http://ftp.se.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-7 [892 B]
-Get:70 http://ftp.se.debian.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
-Get:71 http://ftp.se.debian.org/debian/ unstable/main unzip powerpc 6.0-5 [188 kB]
-Get:72 http://ftp.se.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://ftp.se.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.10-1 [1627 kB]
-Get:74 http://ftp.se.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.10-1 [1166 kB]
-Get:75 http://ftp.se.debian.org/debian/ unstable/main r-base-core powerpc 2.14.0-1 [19.0 MB]
-Get:76 http://ftp.se.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev zlib1g
+9 upgraded, 77 newly installed, 0 to remove and 50 not upgraded.
+Need to get 75.3 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://ftp.se.debian.org/debian/ unstable/main libgomp1 powerpc 4.6.3-1 [26.4 kB]
+Get:2 http://ftp.se.debian.org/debian/ unstable/main gcc-4.6-base powerpc 4.6.3-1 [139 kB]
+Get:3 http://ftp.se.debian.org/debian/ unstable/main libgcc1 powerpc 1:4.6.3-1 [43.1 kB]
+Get:4 http://ftp.se.debian.org/debian/ unstable/main cpp-4.6 powerpc 4.6.3-1 [4618 kB]
+Get:5 http://ftp.se.debian.org/debian/ unstable/main libstdc++6-4.6-dev powerpc 4.6.3-1 [1693 kB]
+Get:6 http://ftp.se.debian.org/debian/ unstable/main g++-4.6 powerpc 4.6.3-1 [6661 kB]
+Get:7 http://ftp.se.debian.org/debian/ unstable/main gcc-4.6 powerpc 4.6.3-1 [4956 kB]
+Get:8 http://ftp.se.debian.org/debian/ unstable/main libstdc++6 powerpc 4.6.3-1 [372 kB]
+Get:9 http://ftp.se.debian.org/debian/ unstable/main zlib1g powerpc 1:1.2.6.dfsg-2 [84.9 kB]
+Get:10 http://ftp.se.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.1-1 [38.5 kB]
+Get:11 http://ftp.se.debian.org/debian/ unstable/main libmagic1 powerpc 5.10-1 [255 kB]
+Get:12 http://ftp.se.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-4 [222 kB]
+Get:13 http://ftp.se.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7.2 [138 kB]
+Get:14 http://ftp.se.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.8-1 [423 kB]
+Get:15 http://ftp.se.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:16 http://ftp.se.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:17 http://ftp.se.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:18 http://ftp.se.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3.1 [281 kB]
+Get:19 http://ftp.se.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.24.4-1 [364 kB]
+Get:20 http://ftp.se.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.47-1 [186 kB]
+Get:21 http://ftp.se.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-4 [17.0 kB]
+Get:22 http://ftp.se.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-4 [23.0 kB]
+Get:23 http://ftp.se.debian.org/debian/ unstable/main libxcb1 powerpc 1.8-2 [45.0 kB]
+Get:24 http://ftp.se.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:25 http://ftp.se.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-4 [868 kB]
+Get:26 http://ftp.se.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.8-2 [17.2 kB]
+Get:27 http://ftp.se.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.8-2 [10.0 kB]
+Get:28 http://ftp.se.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
+Get:29 http://ftp.se.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-7 [923 kB]
+Get:30 http://ftp.se.debian.org/debian/ unstable/main libffi5 powerpc 3.0.10-3 [25.5 kB]
+Get:31 http://ftp.se.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.30.2-6 [1800 kB]
+Get:32 http://ftp.se.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-7 [842 kB]
+Get:33 http://ftp.se.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.4-2 [142 kB]
+Get:34 http://ftp.se.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.5-3 [27.7 kB]
+Get:35 http://ftp.se.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.3-1 [281 kB]
+Get:36 http://ftp.se.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:37 http://ftp.se.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
+Get:38 http://ftp.se.debian.org/debian/ unstable/main libjpeg8 powerpc 8d-1 [130 kB]
+Get:39 http://ftp.se.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:40 http://ftp.se.debian.org/debian/ unstable/main libthai0 powerpc 0.1.17-1 [44.0 kB]
+Get:41 http://ftp.se.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
+Get:42 http://ftp.se.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-3.1 [334 kB]
+Get:43 http://ftp.se.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.29.4-2 [447 kB]
+Get:44 http://ftp.se.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-4 [113 kB]
+Get:45 http://ftp.se.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-2 [28.6 kB]
+Get:46 http://ftp.se.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.6-1 [200 kB]
+Get:47 http://ftp.se.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
+Get:48 http://ftp.se.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
+Get:49 http://ftp.se.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-2 [16.5 kB]
+Get:50 http://ftp.se.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
+Get:51 http://ftp.se.debian.org/debian/ unstable/main bsdmainutils powerpc 9.0.1 [208 kB]
+Get:52 http://ftp.se.debian.org/debian/ unstable/main groff-base powerpc 1.21-6 [1179 kB]
+Get:53 http://ftp.se.debian.org/debian/ unstable/main man-db powerpc 2.6.1-1 [1055 kB]
+Get:54 http://ftp.se.debian.org/debian/ unstable/main file powerpc 5.10-1 [52.9 kB]
+Get:55 http://ftp.se.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-5 [132 kB]
+Get:56 http://ftp.se.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
+Get:57 http://ftp.se.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:58 http://ftp.se.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-5 [2036 kB]
+Get:59 http://ftp.se.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:60 http://ftp.se.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:61 http://ftp.se.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:62 http://ftp.se.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:63 http://ftp.se.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.3-1 [5270 kB]
+Get:64 http://ftp.se.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.2-4 [1130 B]
+Get:65 http://ftp.se.debian.org/debian/ unstable/main libblas3gf powerpc 1.2.20110419-2 [192 kB]
+Get:66 http://ftp.se.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-2 [206 kB]
+Get:67 http://ftp.se.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.6-1 [34.5 kB]
+Get:68 http://ftp.se.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8d-1 [236 kB]
+Get:69 http://ftp.se.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.1-1 [3956 kB]
+Get:70 http://ftp.se.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.1-1 [4261 kB]
+Get:71 http://ftp.se.debian.org/debian/ unstable/main libtinfo-dev powerpc 5.9-4 [105 kB]
+Get:72 http://ftp.se.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-4 [392 kB]
+Get:73 http://ftp.se.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
+Get:74 http://ftp.se.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
+Get:75 http://ftp.se.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-4 [313 kB]
+Get:76 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.6.dfsg-2 [209 kB]
+Get:77 http://ftp.se.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.47-1 [267 kB]
+Get:78 http://ftp.se.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-8 [258 kB]
+Get:79 http://ftp.se.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-8 [896 B]
+Get:80 http://ftp.se.debian.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
+Get:81 http://ftp.se.debian.org/debian/ unstable/main unzip powerpc 6.0-5 [188 kB]
+Get:82 http://ftp.se.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:83 http://ftp.se.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.11-1 [1628 kB]
+Get:84 http://ftp.se.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.11-1 [1167 kB]
+Get:85 http://ftp.se.debian.org/debian/ unstable/main r-base-core powerpc 2.14.2-1 [20.1 MB]
+Get:86 http://ftp.se.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 55.1 MB in 4s (13.1 MB/s)
+Fetched 75.3 MB in 5s (13.5 MB/s)
+(Reading database ... 10672 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.2-11 (using .../libgomp1_4.6.3-1_powerpc.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.2-11 (using .../gcc-4.6-base_4.6.3-1_powerpc.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.3-1) ...
+(Reading database ... 10673 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.2-11 (using .../libgcc1_1%3a4.6.3-1_powerpc.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.3-1) ...
+(Reading database ... 10673 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.2-11 (using .../cpp-4.6_4.6.3-1_powerpc.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.2-11 (using .../libstdc++6-4.6-dev_4.6.3-1_powerpc.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.2-11 (using .../g++-4.6_4.6.3-1_powerpc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.2-11 (using .../gcc-4.6_4.6.3-1_powerpc.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.2-11 (using .../libstdc++6_4.6.3-1_powerpc.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.3-1) ...
+(Reading database ... 10673 files and directories currently installed.)
+Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_powerpc.deb) ...
+Unpacking replacement zlib1g ...
+Setting up zlib1g (1:1.2.6.dfsg-2) ...
Selecting previously unselected package libpipeline1.
-(Reading database ... 10725 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_powerpc.deb) ...
+(Reading database ... 10673 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_powerpc.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_powerpc.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_powerpc.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_powerpc.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_powerpc.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_powerpc.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_powerpc.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_powerpc.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_powerpc.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_powerpc.deb) ...
Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_powerpc.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_powerpc.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_powerpc.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_powerpc.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_powerpc.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_powerpc.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_powerpc.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_powerpc.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_powerpc.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_powerpc.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_powerpc.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_powerpc.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_powerpc.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_powerpc.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_powerpc.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_powerpc.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_powerpc.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_powerpc.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_powerpc.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_powerpc.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_powerpc.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_powerpc.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_powerpc.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_powerpc.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_powerpc.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_powerpc.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_powerpc.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_powerpc.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_powerpc.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_powerpc.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_powerpc.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_powerpc.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_powerpc.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_powerpc.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_powerpc.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_powerpc.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_powerpc.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_powerpc.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_powerpc.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_powerpc.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_powerpc.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_powerpc.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_powerpc.deb) ...
Selecting previously unselected package libxext6.
@@ -360,19 +412,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_powerpc.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_powerpc.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_powerpc.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_powerpc.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_powerpc.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_powerpc.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_powerpc.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_powerpc.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.09-2_powerpc.deb) ...
+Unpacking file (from .../file_5.10-1_powerpc.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_powerpc.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
Selecting previously unselected package gettext.
@@ -380,31 +430,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_powerpc.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_powerpc.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_powerpc.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_powerpc.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_powerpc.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_powerpc.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_powerpc.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_powerpc.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_powerpc.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_powerpc.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_powerpc.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_powerpc.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_powerpc.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_powerpc.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_powerpc.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_powerpc.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_powerpc.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_powerpc.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -412,132 +462,138 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_powerpc.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_powerpc.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_powerpc.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_powerpc.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_powerpc.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_powerpc.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_powerpc.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_powerpc.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_powerpc.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_powerpc.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_powerpc.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_powerpc.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_powerpc.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_powerpc.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_powerpc.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_powerpc.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_powerpc.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_powerpc.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-4) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libgomp1 (4.6.3-1) ...
+Setting up cpp-4.6 (4.6.3-1) ...
+Setting up gcc-4.6 (4.6.3-1) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
+Setting up libstdc++6-4.6-dev (4.6.3-1) ...
+Setting up g++-4.6 (4.6.3-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 50 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-3 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-24 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.1-1
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-3 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-10 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2.1 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-3 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -548,12 +604,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -563,8 +619,8 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture powerpc
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -572,9 +628,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -585,6 +641,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -595,47 +664,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3'
+
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
-
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -647,18 +722,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -666,12 +743,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -680,31 +762,57 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../r-bioc-limma_3.10.0-1_powerpc.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../r-bioc-limma_3.10.3-1_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0541
+Build finished at 20120307-0446
-r-bioc-limma_3.10.0-1_powerpc.changes:
+r-bioc-limma_3.10.3-1_powerpc.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: powerpc
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
Maintainer: powerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org>
@@ -712,35 +820,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 751b45674f37e66b1090fffabef0d6af480f567a 1468918 r-bioc-limma_3.10.0-1_powerpc.deb
+ be4dc3fa935c797ffc70070e58042015df22d063 1473754 r-bioc-limma_3.10.3-1_powerpc.deb
Checksums-Sha256:
- f723d66b2a3cb86f4cea513f499464a81e9883023fe133581ee4a6f9d2a052ff 1468918 r-bioc-limma_3.10.0-1_powerpc.deb
+ 2e0b3d00607eaf39c4f5bddeb6c1812aac05c4f7e92152272ef070d9c05c7485 1473754 r-bioc-limma_3.10.3-1_powerpc.deb
Files:
- b68176b68b1dd8bf8dac41d15e5f93c1 1468918 gnu-r optional r-bioc-limma_3.10.0-1_powerpc.deb
+ fadd0a69aa78d6a50a2df2dcc020617b 1473754 gnu-r optional r-bioc-limma_3.10.3-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_powerpc.deb
+r-bioc-limma_3.10.3-1_powerpc.deb
─────────────────────────────────
new debian package, version 2.0.
- size 1468918 bytes: control archive= 1544 bytes.
- 772 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1473754 bytes: control archive= 1567 bytes.
+ 773 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1673
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.0~)
+ Installed-Size: 1680
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -752,51 +869,52 @@ r-bioc-limma_3.10.0-1_powerpc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8456 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/limma.so
--rwxr-xr-x root/root 1230 2011-11-04 05:41 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1984 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 6023 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 216 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1056 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5603 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 518 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 9458 2011-11-04 05:41 ./usr/lib/R/site-library/limma/INDEX
--rw-r--r-- root/root 1901 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2392 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3267 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 1352 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6221 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 456298 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdb
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 87742 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 737661 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 42743 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 673 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/index.html
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3784 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 197385 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 972 2011-11-04 05:41 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 329 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2118 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8456 2012-03-07 04:46 ./usr/lib/R/site-library/limma/libs/limma.so
+-rwxr-xr-x root/root 1230 2012-03-07 04:46 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 2173 2012-03-07 04:46 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 6022 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 216 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1057 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5603 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 518 2012-03-07 04:46 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 9458 2012-03-07 04:46 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 1901 2012-03-07 04:46 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2392 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3278 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 1353 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6221 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 459381 2012-03-07 04:46 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2012-03-07 04:46 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-07 04:46 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 89361 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 737677 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 673 2012-03-07 04:46 ./usr/lib/R/site-library/limma/doc/index.html
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3765 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 198258 2012-03-07 04:46 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 972 2012-03-07 04:46 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 560 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2302 2012-03-07 04:46 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -810,7 +928,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-aa84ebc0-2b65-457c-9015-dceb5db265eb/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-d3904f66-5c56-4b5a-955f-53d8a5395861/build/buildd-r-bioc-limma_3.10.3-1-powerpc-0ZHK8H
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -818,18 +936,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: powerpc
-Build-Space: 5304
+Build-Space: 5336
Build-Time: 25
Distribution: sid
-Install-Time: 135
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 160
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 195
-Source-Version: 3.10.0-1
-Space: 5304
+Package-Time: 231
+Source-Version: 3.10.3-1
+Space: 5336
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0541
-Build needed 00:03:15, 5304k disc space
+Finished at 20120307-0446
+Build needed 00:03:51, 5336k disc space
diff --git a/s390.log b/s390.log
index 668e1c4..50300f3 100644
--- a/s390.log
+++ b/s390.log
@@ -1,4 +1,4 @@
-From buildd at zandonai.debian.org Fri Nov 04 06:37:55 2011
+From buildd at zandonai.debian.org Wed Mar 07 04:48:51 2012
Return-path: <buildd at zandonai.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,64 +6,66 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1RMDPW-0007ZM-Sc
- for logs at buildd.debian.org; Fri, 04 Nov 2011 06:37:55 +0000
+ id 1S58nz-0004C7-DK
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:48:51 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1RMDPW-0001Df-6m; Fri, 04 Nov 2011 06:37:54 +0000
+ id 1S58ny-0007Oj-IA; Wed, 07 Mar 2012 04:48:50 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1RMDPV-0001vc-Nc; Fri, 04 Nov 2011 06:37:53 +0000
-Message-Id: <E1RMDPV-0001vc-Nc at zandonai.debian.org>
+ id 1S58ny-0000PW-2r; Wed, 07 Mar 2012 04:48:50 +0000
+Message-Id: <E1S58ny-0000PW-2r at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Fri, 4 Nov 2011 06:37:53 +0000
+Date: Wed, 7 Mar 2012 04:48:50 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on s390 (dist=sid)
-Key-Id: 772711F7
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on s390 (dist=sid)
+Key-Id: E7C67939
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (s390) 04 Nov 2011 06:35 ║
+║ r-bioc-limma 3.10.3-1 (s390) 07 Mar 2012 04:47 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: s390
-Get:1 http://ftp.de.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [5890 kB]
+Get:1 http://ftp.de.debian.org unstable InRelease [197 kB]
+Get:2 http://incoming.debian.org unstable InRelease [197 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [6225 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5890 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [56.9 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7615 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [54.5 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [55.0 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [98.5 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [5709 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [36.7 kB]
Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
-Get:13 http://incoming.debian.org unstable/main s390 Packages [7615 kB]
-Get:14 http://incoming.debian.org unstable/contrib s390 Packages [54.5 kB]
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2154 B]
+Get:11 http://ftp.de.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:12 http://ftp.de.debian.org unstable/main Translation-en [3906 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:15 http://incoming.debian.org unstable/main s390 Packages [5710 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390 Packages [36.7 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [31.2 kB]
-Get:18 http://incoming.debian.org Packages [574 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:17 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:18 http://incoming.debian.org Release [1616 B]
+Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:20 http://incoming.debian.org unstable/main Translation-en [3906 kB]
+Get:21 http://incoming.debian.org Sources [64.3 kB]
+Get:22 http://incoming.debian.org Packages [853 kB]
Ign http://incoming.debian.org Translation-en
-Fetched 28.3 MB in 25s (1100 kB/s)
+Fetched 33.5 MB in 35s (940 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +86,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 2s (387 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 2s (343 kB/s)
Download complete and in download only mode
Check arch
@@ -102,60 +104,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 42 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 42 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.3)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-05-2)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-5)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42-1)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.10)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-7)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.26-2)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-1.2)
+mount: already installed (2.20.1-1.2)
+util-linux: already installed (2.20.1-1.2)
+libc6-dev: already installed (2.13-25)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -165,16 +167,16 @@ The following extra packages will be installed:
bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcc1
libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6
- libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
- libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip
+ x11-common xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
@@ -183,218 +185,220 @@ Suggested packages:
gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libreadline6
- libstdc++6 libstdc++6-4.6-dev
-9 upgraded, 77 newly installed, 0 to remove and 33 not upgraded.
-Need to get 66.8 MB of archives.
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev zlib1g
+9 upgraded, 76 newly installed, 0 to remove and 36 not upgraded.
+Need to get 68.0 MB of archives.
After this operation, 115 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libreadline6 s390 6.2-7 [174 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-4 [38.9 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main liblzma5 s390 5.1.1alpha+20110809-3 [208 kB]
-Get:4 http://incoming.debian.org/buildd-unstable/ libgomp1 4.6.2-4 [30.4 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-4 [228 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.8-1 [1681 kB]
-Get:7 http://incoming.debian.org/buildd-unstable/ gcc-4.6-base 4.6.2-4 [137 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-5 [879 kB]
-Get:9 http://incoming.debian.org/buildd-unstable/ libgcc1 1:4.6.2-4 [31.2 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-2 [122 kB]
-Get:11 http://incoming.debian.org/buildd-unstable/ cpp-4.6 4.6.2-4 [3851 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-3 [28.5 kB]
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390 4.6.3-1 [30.5 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.3-1 [139 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390 1:4.6.3-1 [31.2 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.3-1 [3855 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.3-1 [1677 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390 4.6.3-1 [5882 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.3-1 [4171 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390 4.6.3-1 [362 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390 1:1.2.6.dfsg-2 [89.4 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.1-1 [40.0 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.10-1 [259 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-4 [228 kB]
Get:13 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7.2 [137 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.7-2 [436 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3 [286 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-2 [57.1 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.23.8-1 [378 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.46-3 [191 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-3 [17.0 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-3 [23.7 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-3 [48.4 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-2 [892 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-3 [17.0 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-3 [9680 B]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6.1 [956 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-2 [44.0 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3 [335 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.29.4-2 [465 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-4 [114 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-2 [30.3 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8c-2 [139 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-2 [209 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-2 [16.8 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.3 [209 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-6 [1156 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-2 [1029 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.09-2 [257 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main file s390 5.09-2 [52.6 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-5 [143 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-5 [2073 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.1-3 [1128 B]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2.20110419-2 [191 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-2 [203 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-7 [35.9 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8c-2 [241 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.1-1 [1720 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.1-1 [1920 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390 5.9-2 [83.3 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-2 [426 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-4 [308 kB]
-Get:70 http://incoming.debian.org/buildd-unstable/ libstdc++6-4.6-dev 4.6.2-4 [1675 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.46-3 [268 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-7 [258 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-7 [886 B]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-5 [195 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.10-1 [1651 kB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.10-1 [1198 kB]
-Get:80 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.14.0-1 [19.1 MB]
-Get:81 http://incoming.debian.org/buildd-unstable/ g++-4.6 4.6.2-4 [5875 kB]
-Get:82 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
-Get:83 http://incoming.debian.org/buildd-unstable/ gcc-4.6 4.6.2-4 [4159 kB]
-Get:84 http://incoming.debian.org/buildd-unstable/ libstdc++6 4.6.2-4 [361 kB]
-Get:85 http://incoming.debian.org/buildd-unstable/ libgfortran3 4.6.2-4 [296 kB]
-Get:86 http://incoming.debian.org/buildd-unstable/ gfortran-4.6 4.6.2-4 [4515 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.8-1 [439 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3.1 [286 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.24.4-1 [376 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.47-1 [192 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-4 [17.1 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-4 [23.8 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.8-2 [53.0 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-4 [892 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.8-2 [18.9 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.8-2 [10.2 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-7 [976 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390 3.0.10-3 [25.3 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.30.2-6 [1875 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-7 [882 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.4-2 [149 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.5-3 [29.7 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.3-1 [296 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-2 [57.1 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8d-1 [141 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.17-1 [46.0 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3.1 [336 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.29.4-2 [465 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-4 [114 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-2 [30.3 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.6-1 [210 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-2 [16.8 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 9.0.1 [213 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-6 [1156 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.1-1 [1068 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main file s390 5.10-1 [53.5 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-5 [143 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-5 [2073 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.3-1 [4520 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.2-4 [1130 B]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2.20110419-2 [191 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-2 [203 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.6-1 [35.7 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8d-1 [243 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.1-1 [1720 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.1-1 [1920 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390 5.9-4 [113 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-4 [396 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-4 [308 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.6.dfsg-2 [213 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.47-1 [270 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-8 [258 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-8 [894 B]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-5 [195 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.11-1 [1654 kB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.11-1 [1200 kB]
+Get:84 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.14.2-1 [20.1 MB]
+Get:85 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 66.8 MB in 37s (1774 kB/s)
-(Reading database ... 10631 files and directories currently installed.)
-Preparing to replace libreadline6 6.2-6 (using .../libreadline6_6.2-7_s390.deb) ...
-Unpacking replacement libreadline6 ...
-Setting up libreadline6 (6.2-7) ...
-(Reading database ... 10631 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-13 (using .../libgomp1_4.6.2-4_s390.deb) ...
+Fetched 68.0 MB in 24s (2753 kB/s)
+(Reading database ... 10605 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.2-12 (using .../libgomp1_4.6.3-1_s390.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-13 (using .../gcc-4.6-base_4.6.2-4_s390.deb) ...
+Preparing to replace gcc-4.6-base 4.6.2-12 (using .../gcc-4.6-base_4.6.3-1_s390.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.2-4) ...
-(Reading database ... 10632 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-13 (using .../libgcc1_1%3a4.6.2-4_s390.deb) ...
+Setting up gcc-4.6-base (4.6.3-1) ...
+(Reading database ... 10606 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.2-12 (using .../libgcc1_1%3a4.6.3-1_s390.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.2-4) ...
-(Reading database ... 10632 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-13 (using .../cpp-4.6_4.6.2-4_s390.deb) ...
+Setting up libgcc1 (1:4.6.3-1) ...
+(Reading database ... 10606 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.2-12 (using .../cpp-4.6_4.6.3-1_s390.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-13 (using .../libstdc++6-4.6-dev_4.6.2-4_s390.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.2-12 (using .../libstdc++6-4.6-dev_4.6.3-1_s390.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-13 (using .../g++-4.6_4.6.2-4_s390.deb) ...
+Preparing to replace g++-4.6 4.6.2-12 (using .../g++-4.6_4.6.3-1_s390.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-13 (using .../gcc-4.6_4.6.2-4_s390.deb) ...
+Preparing to replace gcc-4.6 4.6.2-12 (using .../gcc-4.6_4.6.3-1_s390.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-13 (using .../libstdc++6_4.6.2-4_s390.deb) ...
+Preparing to replace libstdc++6 4.6.2-12 (using .../libstdc++6_4.6.3-1_s390.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.2-4) ...
+Setting up libstdc++6 (4.6.3-1) ...
+(Reading database ... 10606 files and directories currently installed.)
+Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_s390.deb) ...
+Unpacking replacement zlib1g ...
+Setting up zlib1g (1:1.2.6.dfsg-2) ...
Selecting previously unselected package libpipeline1.
-(Reading database ... 10632 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_s390.deb) ...
-Selecting previously unselected package liblzma5.
-Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_s390.deb) ...
+(Reading database ... 10606 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_s390.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_s390.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_s390.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_s390.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_s390.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_s390.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_s390.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_s390.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_s390.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_s390.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-4_s390.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_s390.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_s390.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_s390.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_s390.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_s390.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_s390.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_s390.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_s390.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_s390.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_s390.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_s390.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_s390.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_s390.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_s390.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_s390.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_s390.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_s390.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_s390.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_s390.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_s390.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_s390.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_s390.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_s390.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_s390.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_s390.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_s390.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_s390.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_s390.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_s390.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_s390.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_s390.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_s390.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_s390.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_s390.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_s390.deb) ...
Selecting previously unselected package libxext6.
@@ -404,19 +408,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_s390.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_s390.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_s390.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_s390.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_s390.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_s390.deb) ...
+Unpacking file (from .../archives/file_5.10-1_s390.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_s390.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
Selecting previously unselected package gettext.
@@ -424,31 +426,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_s390.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-4_s390.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_s390.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_s390.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_s390.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_s390.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_s390.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_s390.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_s390.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_s390.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_s390.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_s390.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_s390.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_s390.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_s390.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -456,138 +458,137 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_s390.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_s390.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_s390.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_s390.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_s390.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_s390.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_s390.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_s390.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_s390.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_s390.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_s390.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_s390.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_s390.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_s390.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libgomp1 (4.6.2-4) ...
-Setting up cpp-4.6 (4.6.2-4) ...
-Setting up gcc-4.6 (4.6.2-4) ...
-Setting up libpipeline1 (1.2.0-4) ...
-Setting up liblzma5 (5.1.1alpha+20110809-3) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libgomp1 (4.6.3-1) ...
+Setting up cpp-4.6 (4.6.3-1) ...
+Setting up gcc-4.6 (4.6.3-1) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-4) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-4) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
-Setting up libstdc++6-4.6-dev (4.6.2-4) ...
-Setting up g++-4.6 (4.6.2-4) ...
+Setting up r-base-dev (2.14.2-1) ...
+Setting up libstdc++6-4.6-dev (4.6.3-1) ...
+Setting up g++-4.6 (4.6.3-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.21.90.20111004-1 dpkg-dev_1.16.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.8 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.3 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-10-05-2 e2fsprogs_1.42~WIP-2011-10-05-2 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-05-2 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libgfortran3_4.6.2-4 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.1.0-1 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-05-2 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-5 perl-base_5.12.4-5 perl-modules_5.12.4-5 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-6 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011k-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-25 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.1-2
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-25 libc-dev-bin_2.13-25 libc6_2.13-25 libc6-dev_2.13-25 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.3+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-25 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -598,12 +599,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -612,14 +613,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
-dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture s390
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -627,9 +623,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -640,6 +636,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -650,47 +659,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -702,18 +717,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -721,12 +738,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -735,67 +757,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_s390.deb'.
- dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.0-1_s390.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_s390.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.3-1_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0637
+Build finished at 20120307-0448
-r-bioc-limma_3.10.0-1_s390.changes:
+r-bioc-limma_3.10.3-1_s390.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
-Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
+ .
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- c434ba8176e35a50525c12c238cfba7a9295288f 1470862 r-bioc-limma_3.10.0-1_s390.deb
+ 3e15b2e22237ae1fc42989d734c75949d56574b5 1476292 r-bioc-limma_3.10.3-1_s390.deb
Checksums-Sha256:
- a777c2b4de877c5ccd35f5bed7a56d733c185b87b61422ef5d2e8293c8636987 1470862 r-bioc-limma_3.10.0-1_s390.deb
+ 72dab88e436d43a17e32532b091156ad387594e487300de676fa5dc9160f086d 1476292 r-bioc-limma_3.10.3-1_s390.deb
Files:
- 3ce54d4a288faac2527fa28926d5925f 1470862 gnu-r optional r-bioc-limma_3.10.0-1_s390.deb
+ 89061625a8765a1e697433c055a92f12 1476292 gnu-r optional r-bioc-limma_3.10.3-1_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_s390.deb
+r-bioc-limma_3.10.3-1_s390.deb
──────────────────────────────
new debian package, version 2.0.
- size 1470862 bytes: control archive= 1538 bytes.
- 769 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1476292 bytes: control archive= 1569 bytes.
+ 770 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1672
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.0~)
+ Installed-Size: 1679
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -807,51 +864,52 @@ r-bioc-limma_3.10.0-1_s390.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9458 2011-11-04 06:37 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197384 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3783 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-11-04 06:37 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34556 2011-11-04 06:37 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8492 2011-11-04 06:37 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1350 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 455717 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3266 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2392 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6221 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1901 2011-11-04 06:37 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 737661 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 42743 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 87742 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 965 2011-11-04 06:37 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1984 2011-11-04 06:37 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 518 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 216 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5603 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1051 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6023 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2011-11-04 06:37 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 329 2011-11-04 06:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2118 2011-11-04 06:37 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2012-03-07 04:48 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 04:48 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198254 2012-03-07 04:48 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3774 2012-03-07 04:48 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2012-03-07 04:48 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2012-03-07 04:48 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8492 2012-03-07 04:48 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1350 2012-03-07 04:48 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 458765 2012-03-07 04:48 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3268 2012-03-07 04:48 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2012-03-07 04:48 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6221 2012-03-07 04:48 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1901 2012-03-07 04:48 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 737677 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 89361 2012-03-07 04:48 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 965 2012-03-07 04:48 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 2173 2012-03-07 04:48 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 216 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5603 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1052 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6022 2012-03-07 04:48 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2012-03-07 04:48 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 04:48 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 04:48 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 04:48 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2302 2012-03-07 04:48 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -865,7 +923,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390-sbuild-cdf11178-0f25-4df5-a99f-c524e7e2fa74/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ
+Purging /var/lib/schroot/mount/sid-s390-sbuild-904fa078-6f5a-4ef9-b02c-dd2ca198ee59/build/buildd-r-bioc-limma_3.10.3-1-s390-9B6x2C
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -873,22 +931,22 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390
-Build-Space: 5308
-Build-Time: 15
+Build-Space: 5340
+Build-Time: 14
Distribution: sid
-Install-Time: 63
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 43
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 119
-Source-Version: 3.10.0-1
-Space: 5308
+Package-Time: 107
+Source-Version: 3.10.3-1
+Space: 5340
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0637
-Build needed 00:01:59, 5308k disc space
-Signature with key '772711F7' requested:
-From buildd at zandonai.debian.org Sun Dec 04 15:01:31 2011
+Finished at 20120307-0448
+Build needed 00:01:47, 5340k disc space
+Signature with key 'E7C67939' requested:
+From buildd at zandonai.debian.org Wed Mar 07 04:50:52 2012
Return-path: <buildd at zandonai.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -896,64 +954,66 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1RXDZL-0007Ea-8q
- for logs at buildd.debian.org; Sun, 04 Dec 2011 15:01:31 +0000
+ id 1S58pw-0004hi-Bq
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:50:52 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1RXDZK-0006WG-HT; Sun, 04 Dec 2011 15:01:30 +0000
+ id 1S58pv-0007hu-Gb; Wed, 07 Mar 2012 04:50:51 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1RXDZK-0000aw-0u; Sun, 04 Dec 2011 15:01:30 +0000
-Message-Id: <E1RXDZK-0000aw-0u at zandonai.debian.org>
+ id 1S58pv-0001Jf-0W; Wed, 07 Mar 2012 04:50:51 +0000
+Message-Id: <E1S58pv-0001Jf-0W at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Dec 2011 15:01:29 +0000
+Date: Wed, 7 Mar 2012 04:50:50 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on s390x (dist=sid)
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on s390x (dist=sid)
Key-Id: 96C8554F
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (s390x) 04 Dec 2011 15:00 ║
+║ r-bioc-limma 3.10.3-1 (s390x) 07 Mar 2012 04:49 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: s390x
-Get:1 http://ftp.de.debian.org unstable InRelease [188 kB]
-Get:2 http://incoming.debian.org unstable InRelease [188 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [5936 kB]
+Get:1 http://ftp.de.debian.org unstable InRelease [197 kB]
+Get:2 http://incoming.debian.org unstable InRelease [197 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [6225 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5928 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [56.3 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390x Packages [6401 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390x Packages [38.8 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [55.0 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [98.5 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390x Packages [5316 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390x Packages [35.0 kB]
Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [56.4 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
-Get:13 http://incoming.debian.org unstable/main s390x Packages [6439 kB]
-Get:14 http://incoming.debian.org unstable/contrib s390x Packages [38.9 kB]
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2154 B]
+Get:11 http://ftp.de.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:12 http://ftp.de.debian.org unstable/main Translation-en [3906 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:15 http://incoming.debian.org unstable/main s390x Packages [5322 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390x Packages [35.0 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:16 http://incoming.debian.org Release [1616 B]
-Get:17 http://incoming.debian.org Sources [49.2 kB]
-Get:18 http://incoming.debian.org Packages [891 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:17 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:18 http://incoming.debian.org Release [1616 B]
+Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:20 http://incoming.debian.org unstable/main Translation-en [3906 kB]
+Get:21 http://incoming.debian.org Sources [64.3 kB]
+Get:22 http://incoming.debian.org Packages [853 kB]
Ign http://incoming.debian.org Translation-en
-Fetched 26.4 MB in 24s (1068 kB/s)
+Fetched 32.7 MB in 33s (969 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -974,11 +1034,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 0s (2568 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 2s (329 kB/s)
Download complete and in download only mode
Check arch
@@ -998,55 +1058,57 @@ Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-21+b1)
-gcc: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-27)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1+b1)
dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.11
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils bzip2 dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-1.0 libbz2-dev libcairo2 libcroco3 libdatrie1
- libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0
- libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation bzip2-doc devscripts dh-make curl defoma
- gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -1063,174 +1125,162 @@ The following NEW packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- bzip2 libbz2-1.0
-2 upgraded, 77 newly installed, 0 to remove and 2 not upgraded.
-Need to get 56.2 MB of archives.
-After this operation, 125 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.0-5+b1 [39.8 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 8.12-4+b1 [235 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.30.2-4 [1866 kB]
-Get:5 http://incoming.debian.org/debian/ unstable/main bzip2 s390x 1.0.6-1 [51.1 kB]
-Get:6 http://incoming.debian.org/debian/ unstable/main libbz2-1.0 s390x 1.0.6-1 [52.7 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-5+b1 [891 kB]
-Get:8 http://incoming.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.2-2+b1 [123 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-2 [29.6 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.0.1-7.2 [141 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.8-1 [456 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3 [286 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.6.2-5+b1 [350 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.7-2+b1 [59.2 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.0-1 [346 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.46-3 [192 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.6-4 [17.0 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.7-4+b1 [48.6 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.7-4+b1 [17.4 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.7-4+b1 [9930 B]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.10.2-6.1 [949 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.16-2 [203 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.16-2 [45.8 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3 [336 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.29.4-2 [468 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 8.12-4+b1 [114 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.0-2 [30.3 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8c-2 [189 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.5-2 [210 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 8.2.3 [213 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-6+b1 [1184 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.0.2-3+b1 [1029 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.09-2+b1 [252 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.09-2+b1 [52.9 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.100 [77.1 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.11 [552 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.2-5+b1 [4781 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.2-1 [1130 B]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8c-2 [295 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-4+b1 [121 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-4+b1 [413 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 8.12-4+b1 [318 kB]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.3.4.dfsg-3+b1 [199 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.46-3 [272 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-5 [202 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-3 [70.8 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.10-1 [1652 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.10-1 [1221 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.14.0-1 [19.2 MB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+0 upgraded, 76 newly installed, 0 to remove and 10 not upgraded.
+Need to get 57.4 MB of archives.
+After this operation, 127 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.10-1 [255 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 8.12-4+b1 [235 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.0.1-7.2 [141 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.8-1 [456 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3.1 [285 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.4-1 [348 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.47-1 [193 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.6-4 [17.0 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8-2 [52.6 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8-2 [19.0 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8-2 [10.2 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.10.2-7 [978 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.30.2-6 [1867 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-7 [894 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.4-2 [150 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-3 [29.7 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.6.3-1 [350 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.7-2+b1 [59.2 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.17-1 [46.6 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3.1 [337 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.29.4-2 [468 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 8.12-4+b1 [114 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.0-2 [30.3 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.6-1 [211 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-6+b1 [1184 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.1-1 [1070 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.10-1 [53.6 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.3-1 [4788 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.2-4 [1132 B]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-4+b1 [121 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-4+b1 [413 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 8.12-4+b1 [318 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.6.dfsg-2 [217 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.47-1 [273 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-5 [202 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-1 [1652 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-1 [1224 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.14.2-1 [20.2 MB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 56.2 MB in 15s (3720 kB/s)
-(Reading database ... 10722 files and directories currently installed.)
-Preparing to replace bzip2 1.0.5-7+b1 (using .../bzip2_1.0.6-1_s390x.deb) ...
-Unpacking replacement bzip2 ...
-Preparing to replace libbz2-1.0 1.0.5-7+b1 (using .../libbz2-1.0_1.0.6-1_s390x.deb) ...
-Unpacking replacement libbz2-1.0 ...
-Setting up libbz2-1.0 (1.0.6-1) ...
+Fetched 57.4 MB in 25s (2259 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10722 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5+b1_s390x.deb) ...
+(Reading database ... 10784 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_s390x.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_s390x.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4+b1_s390x.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_s390x.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5+b1_s390x.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2+b1_s390x.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-2_s390x.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_s390x.deb) ...
Selecting previously unselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_s390x.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390x.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-5+b1_s390x.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2+b1_s390x.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_s390x.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.0-1_s390x.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_s390x.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390x.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_s390x.deb) ...
Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_s390x.deb) ...
Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_s390x.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-4+b1_s390x.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_s390x.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_s390x.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-4+b1_s390x.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_s390x.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-4+b1_s390x.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_s390x.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390x.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390x.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_s390x.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_s390x.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_s390x.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_s390x.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_s390x.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_s390x.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2+b1_s390x.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_s390x.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.16-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.16-2_s390x.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_s390x.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_s390x.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390x.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_s390x.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_s390x.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4+b1_s390x.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390x.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390x.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_s390x.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_s390x.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
Selecting previously unselected package libxext6.
@@ -1240,19 +1290,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_s390x.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390x.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390x.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390x.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6+b1_s390x.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-3+b1_s390x.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2+b1_s390x.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_s390x.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.09-2+b1_s390x.deb) ...
+Unpacking file (from .../archives/file_5.10-1_s390x.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+b1_s390x.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
Selecting previously unselected package gettext.
@@ -1260,15 +1308,15 @@ Unpacking gettext (from .../gettext_0.18.1.1-5+b1_s390x.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.11_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-5+b1_s390x.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_s390x.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.2-1_s390x.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_s390x.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390x.deb) ...
Selecting previously unselected package libblas-dev.
@@ -1276,7 +1324,7 @@ Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390x.deb) ...
Selecting previously unselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_s390x.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390x.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_s390x.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_s390x.deb) ...
Selecting previously unselected package liblapack-dev.
@@ -1292,9 +1340,9 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390x.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4+b1_s390x.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3+b1_s390x.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_s390x.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390x.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_s390x.deb) ...
Selecting previously unselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8+b1_s390x.deb) ...
Selecting previously unselected package libreadline-dev.
@@ -1304,86 +1352,84 @@ Unpacking zip (from .../archives/zip_3.0-4_s390x.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_s390x.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-3_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_s390x.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_s390x.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390x.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_s390x.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_s390x.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_s390x.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up bzip2 (1.0.6-1) ...
-Setting up libpipeline1 (1.2.0-5+b1) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4+b1) ...
-Setting up libffi5 (3.0.10-3+b1) ...
-Setting up libglib2.0-0 (2.30.2-4) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5+b1) ...
-Setting up libcroco3 (0.6.2-2+b1) ...
-Setting up libdatrie1 (0.2.5-2) ...
Setting up libexpat1 (2.0.1-7.2) ...
Setting up libfreetype6 (2.4.8-1) ...
-Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-5+b1) ...
-Setting up x11-common (1:7.6+9) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-2+b1) ...
-Setting up libpixman-1-0 (0.24.0-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
Setting up libxau6 (1:1.0.6-4) ...
Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.7-4+b1) ...
+Setting up libxcb1 (1.8-2) ...
Setting up libx11-data (2:1.4.4-4) ...
Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.7-4+b1) ...
-Setting up libxcb-shm0 (1.7-4+b1) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.16-2) ...
-Setting up libthai0 (0.1.16-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3+b1) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2+b1) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4+b1) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5+b1) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6+b1) ...
-Setting up man-db (2.6.0.2-3+b1) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2+b1) ...
-Setting up file (5.09-2+b1) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5+b1) ...
-Setting up cdbs (0.4.100) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15+b1) ...
Setting up gettext (0.18.1.1-5+b1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.11) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-5+b1) ...
-Setting up gfortran (4:4.6.2-1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
@@ -1395,31 +1441,31 @@ Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4+b1) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3+b1) ...
-Setting up libpng12-dev (1.2.46-3) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
Setting up libreadline6-dev (6.2-8+b1) ...
Setting up libreadline-dev (6.2-8+b1) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-3) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-1+b1 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-5+b1 gcc-4.6_4.6.2-5+b1 libc6-dev_2.13-21+b1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 linux-libc-dev_3.1.4-1
-Package versions: apt_0.8.15.9+b1 base-files_6.5+b1 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-1+b1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.100 coreutils_8.13-3+b1 cpp_4:4.6.2-1 cpp-4.6_4.6.2-5+b1 dash_0.5.7-2+b1 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1+b1 debhelper_8.9.11 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1+b1 dpatch_2.0.33 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.2-1 g++-4.6_4.6.2-5+b1 gcc_4:4.6.2-1 gcc-4.6_4.6.2-5+b1 gcc-4.6-base_4.6.2-5+b1 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.2-1 gfortran-4.6_4.6.2-5+b1 gnupg_1.4.11-3+b1 gpgv_1.4.11-3+b1 grep_2.9-2+b1 groff-base_1.21-6+b1 gzip_1.4-2+b1 hostname_3.06+b1 html2text_1.3.2a-15+b1 initscripts_2.88dsf-13.13+b1 insserv_1.14.0-2.1+b1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4+b1 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-21+b1 libc-dev-bin_2.13-21+b1 libc6_2.13-21+b1 libc6-dev_2.13-21+b1 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2+b1 libdatrie1_0.2.5-2 libdb5.1_5.1.25-11+b1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.6.2-5+b1 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.2-5+b1 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2+b1 libgomp1_4.6.2-5+b1 libice6_2:1.0.7-2+b1 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.09-2+b1 libmount1_2.19.1-5 libmpc2_0.9-4+b1 libmpfr4_3.1.0-3+b1 libncurses5_5.9-4+b1 libncurses5-dev_5.9-4+b1 libpam-modules_1.1.3-6+b1 libpam-modules-bin_1.1.3-6+b1 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6+b1 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4+b1 libpcre3-dev_8.12-4+b1 libpcrecpp0_8.12-4+b1 libpipeline1_1.2.0-5+b1 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.0-4+b1 libsepol1_2.1.0-1.1+b1 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.16-2 libthai0_0.1.16-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4+b1 libtinfo5_5.9-4+b1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-19+b1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4+b1 libxcb-shm0_1.7-4+b1 libxcb1_1.7-4+b1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5+b1 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.4-1 login_1:4.1.4.2+svn3283-3+b1 lsb-base_3.2-28 make_3.81-8.1+b1 man-db_2.6.0.2-3+b1 mawk_1.3.3-16+b1 mount_2.19.1-5 multiarch-support_2.13-21+b1 ncurses-base_5.9-4 ncurses-bin_5.9-4+b1 passwd_1:4.1.4.2+svn3283-3+b1 patch_2.6.1-2+b1 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p1-2+b1 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13+b1 sysvinit-utils_2.88dsf-13.13+b1 tar_1.26-3+b1 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-3 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3+b1 zlib1g-dev_1:1.2.3.4.dfsg-3+b1
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.7-1
+Package versions: apt_0.8.15.9+b1 base-files_6.5+b1 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3+b1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1+b1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1+b1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6+b1 gzip_1.4-2+b1 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2+b1 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-3+b1 libncurses5_5.9-4+b1 libncurses5-dev_5.9-4+b1 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4+b1 libpcre3-dev_8.12-4+b1 libpcrecpp0_8.12-4+b1 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4+b1 libtinfo5_5.9-4+b1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.7-1 login_1:4.1.5-1 lsb-base_3.2+Debian29 make_3.81-8.1+b1 man-db_2.6.1-1 mawk_1.3.3-16+b1 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4+b1 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1430,12 +1476,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -1445,8 +1491,8 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture s390x
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -1454,9 +1500,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1467,6 +1513,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -1477,47 +1536,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -1529,18 +1594,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -1548,12 +1615,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -1562,31 +1634,57 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.0-1_s390x.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.3-1_s390x.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111204-1501
+Build finished at 20120307-0450
-r-bioc-limma_3.10.0-1_s390x.changes:
+r-bioc-limma_3.10.3-1_s390x.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390x
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
@@ -1594,35 +1692,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
+ .
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 1267767968d03f7cd721190a1cebd33ca2c31c8d 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+ 97a42e3c7baf0601db9e4d4dc25c87ddf292e967 1477070 r-bioc-limma_3.10.3-1_s390x.deb
Checksums-Sha256:
- a3402e9cfc25d0b9d56abdd994ab919246c6c815e8dc0415abc55b9e6ee66caa 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+ c1bbe80fecc80d0d7eeb8f38fb75a8e2cad2e421c7312a06ed79cdbee7a884f0 1477070 r-bioc-limma_3.10.3-1_s390x.deb
Files:
- 7db57adebddca21f0df35673f40f1437 1471634 gnu-r optional r-bioc-limma_3.10.0-1_s390x.deb
+ 1fd83a4a2cbff3f839d90b87e897b5fc 1477070 gnu-r optional r-bioc-limma_3.10.3-1_s390x.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_s390x.deb
+r-bioc-limma_3.10.3-1_s390x.deb
───────────────────────────────
new debian package, version 2.0.
- size 1471634 bytes: control archive= 1535 bytes.
- 769 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1477070 bytes: control archive= 1573 bytes.
+ 770 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1675
- Depends: libc6 (>= 2.13), r-base-core (>= 2.14.0~)
+ Installed-Size: 1681
+ Depends: libc6 (>= 2.13), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -1634,51 +1741,52 @@ r-bioc-limma_3.10.0-1_s390x.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9458 2011-12-04 15:01 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197384 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3783 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34556 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10632 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1353 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 456033 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3277 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2392 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6221 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1901 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 737661 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 42743 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 87742 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 966 2011-12-04 15:01 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1984 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 518 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 216 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5603 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1055 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6023 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2011-12-04 15:01 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 329 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2118 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2012-03-07 04:50 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198253 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3773 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2012-03-07 04:50 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2012-03-07 04:50 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10632 2012-03-07 04:50 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1352 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 458658 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3284 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6221 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1901 2012-03-07 04:50 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 737677 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 89361 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 966 2012-03-07 04:50 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 2173 2012-03-07 04:50 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 216 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5603 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1052 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6022 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2012-03-07 04:50 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2302 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1692,7 +1800,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-8ea54fc1-535e-404d-acfd-f1f876076319/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-09f2bd23-781e-476e-9561-8510bdfcacac/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1700,18 +1808,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390x
-Build-Space: 5308
-Build-Time: 14
+Build-Space: 5336
+Build-Time: 16
Distribution: sid
-Install-Time: 31
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 42
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 83
-Source-Version: 3.10.0-1
-Space: 5308
+Package-Time: 107
+Source-Version: 3.10.3-1
+Space: 5336
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111204-1501
-Build needed 00:01:23, 5308k disc space
+Finished at 20120307-0450
+Build needed 00:01:47, 5336k disc space
Signature with key '96C8554F' requested:
diff --git a/s390x.log b/s390x.log
index 923963d..a5dc055 100644
--- a/s390x.log
+++ b/s390x.log
@@ -1,4 +1,4 @@
-From buildd at zandonai.debian.org Sun Dec 04 15:01:31 2011
+From buildd at zandonai.debian.org Wed Mar 07 04:50:52 2012
Return-path: <buildd at zandonai.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,64 +6,66 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1RXDZL-0007Ea-8q
- for logs at buildd.debian.org; Sun, 04 Dec 2011 15:01:31 +0000
+ id 1S58pw-0004hi-Bq
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:50:52 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1RXDZK-0006WG-HT; Sun, 04 Dec 2011 15:01:30 +0000
+ id 1S58pv-0007hu-Gb; Wed, 07 Mar 2012 04:50:51 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1RXDZK-0000aw-0u; Sun, 04 Dec 2011 15:01:30 +0000
-Message-Id: <E1RXDZK-0000aw-0u at zandonai.debian.org>
+ id 1S58pv-0001Jf-0W; Wed, 07 Mar 2012 04:50:51 +0000
+Message-Id: <E1S58pv-0001Jf-0W at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Dec 2011 15:01:29 +0000
+Date: Wed, 7 Mar 2012 04:50:50 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on s390x (dist=sid)
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on s390x (dist=sid)
Key-Id: 96C8554F
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (s390x) 04 Dec 2011 15:00 ║
+║ r-bioc-limma 3.10.3-1 (s390x) 07 Mar 2012 04:49 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: s390x
-Get:1 http://ftp.de.debian.org unstable InRelease [188 kB]
-Get:2 http://incoming.debian.org unstable InRelease [188 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [5936 kB]
+Get:1 http://ftp.de.debian.org unstable InRelease [197 kB]
+Get:2 http://incoming.debian.org unstable InRelease [197 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [6225 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5928 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [56.3 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390x Packages [6401 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390x Packages [38.8 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [55.0 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [98.5 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390x Packages [5316 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390x Packages [35.0 kB]
Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [56.4 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
-Get:13 http://incoming.debian.org unstable/main s390x Packages [6439 kB]
-Get:14 http://incoming.debian.org unstable/contrib s390x Packages [38.9 kB]
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2154 B]
+Get:11 http://ftp.de.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:12 http://ftp.de.debian.org unstable/main Translation-en [3906 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:15 http://incoming.debian.org unstable/main s390x Packages [5322 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390x Packages [35.0 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:16 http://incoming.debian.org Release [1616 B]
-Get:17 http://incoming.debian.org Sources [49.2 kB]
-Get:18 http://incoming.debian.org Packages [891 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:17 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:18 http://incoming.debian.org Release [1616 B]
+Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:20 http://incoming.debian.org unstable/main Translation-en [3906 kB]
+Get:21 http://incoming.debian.org Sources [64.3 kB]
+Get:22 http://incoming.debian.org Packages [853 kB]
Ign http://incoming.debian.org Translation-en
-Fetched 26.4 MB in 24s (1068 kB/s)
+Fetched 32.7 MB in 33s (969 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +86,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 0s (2568 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 2s (329 kB/s)
Download complete and in download only mode
Check arch
@@ -108,55 +110,57 @@ Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-21+b1)
-gcc: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-27)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1+b1)
dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.11
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils bzip2 dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-1.0 libbz2-dev libcairo2 libcroco3 libdatrie1
- libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0
- libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation bzip2-doc devscripts dh-make curl defoma
- gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -173,174 +177,162 @@ The following NEW packages will be installed:
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- bzip2 libbz2-1.0
-2 upgraded, 77 newly installed, 0 to remove and 2 not upgraded.
-Need to get 56.2 MB of archives.
-After this operation, 125 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.0-5+b1 [39.8 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 8.12-4+b1 [235 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.30.2-4 [1866 kB]
-Get:5 http://incoming.debian.org/debian/ unstable/main bzip2 s390x 1.0.6-1 [51.1 kB]
-Get:6 http://incoming.debian.org/debian/ unstable/main libbz2-1.0 s390x 1.0.6-1 [52.7 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-5+b1 [891 kB]
-Get:8 http://incoming.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.2-2+b1 [123 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-2 [29.6 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.0.1-7.2 [141 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.8-1 [456 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3 [286 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.6.2-5+b1 [350 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.7-2+b1 [59.2 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.0-1 [346 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.46-3 [192 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.6-4 [17.0 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.7-4+b1 [48.6 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.7-4+b1 [17.4 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.7-4+b1 [9930 B]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.10.2-6.1 [949 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.16-2 [203 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.16-2 [45.8 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3 [336 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.29.4-2 [468 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 8.12-4+b1 [114 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.0-2 [30.3 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8c-2 [189 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.5-2 [210 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 8.2.3 [213 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-6+b1 [1184 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.0.2-3+b1 [1029 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.09-2+b1 [252 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.09-2+b1 [52.9 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.100 [77.1 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.11 [552 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.2-5+b1 [4781 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.2-1 [1130 B]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8c-2 [295 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-4+b1 [121 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-4+b1 [413 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 8.12-4+b1 [318 kB]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.3.4.dfsg-3+b1 [199 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.46-3 [272 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-5 [202 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-3 [70.8 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.10-1 [1652 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.10-1 [1221 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.14.0-1 [19.2 MB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+0 upgraded, 76 newly installed, 0 to remove and 10 not upgraded.
+Need to get 57.4 MB of archives.
+After this operation, 127 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.10-1 [255 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 8.12-4+b1 [235 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.0.1-7.2 [141 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.8-1 [456 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3.1 [285 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.4-1 [348 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.47-1 [193 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.6-4 [17.0 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8-2 [52.6 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8-2 [19.0 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8-2 [10.2 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.10.2-7 [978 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.30.2-6 [1867 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-7 [894 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.4-2 [150 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-3 [29.7 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.6.3-1 [350 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.7-2+b1 [59.2 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.17-1 [46.6 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3.1 [337 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.29.4-2 [468 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 8.12-4+b1 [114 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.0-2 [30.3 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.6-1 [211 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-6+b1 [1184 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.1-1 [1070 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.10-1 [53.6 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.3-1 [4788 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.2-4 [1132 B]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-4+b1 [121 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-4+b1 [413 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 8.12-4+b1 [318 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.6.dfsg-2 [217 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.47-1 [273 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-5 [202 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-1 [1652 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-1 [1224 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.14.2-1 [20.2 MB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 56.2 MB in 15s (3720 kB/s)
-(Reading database ... 10722 files and directories currently installed.)
-Preparing to replace bzip2 1.0.5-7+b1 (using .../bzip2_1.0.6-1_s390x.deb) ...
-Unpacking replacement bzip2 ...
-Preparing to replace libbz2-1.0 1.0.5-7+b1 (using .../libbz2-1.0_1.0.6-1_s390x.deb) ...
-Unpacking replacement libbz2-1.0 ...
-Setting up libbz2-1.0 (1.0.6-1) ...
+Fetched 57.4 MB in 25s (2259 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10722 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5+b1_s390x.deb) ...
+(Reading database ... 10784 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_s390x.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_s390x.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4+b1_s390x.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_s390x.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5+b1_s390x.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2+b1_s390x.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-2_s390x.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_s390x.deb) ...
Selecting previously unselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_s390x.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390x.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-5+b1_s390x.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2+b1_s390x.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_s390x.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.0-1_s390x.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_s390x.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390x.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_s390x.deb) ...
Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_s390x.deb) ...
Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_s390x.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-4+b1_s390x.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_s390x.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_s390x.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-4+b1_s390x.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_s390x.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-4+b1_s390x.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_s390x.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390x.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390x.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_s390x.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_s390x.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_s390x.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_s390x.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_s390x.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_s390x.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2+b1_s390x.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_s390x.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.16-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.16-2_s390x.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_s390x.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_s390x.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390x.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_s390x.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_s390x.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4+b1_s390x.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390x.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390x.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_s390x.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_s390x.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
Selecting previously unselected package libxext6.
@@ -350,19 +342,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_s390x.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390x.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390x.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390x.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6+b1_s390x.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-3+b1_s390x.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2+b1_s390x.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_s390x.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.09-2+b1_s390x.deb) ...
+Unpacking file (from .../archives/file_5.10-1_s390x.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+b1_s390x.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
Selecting previously unselected package gettext.
@@ -370,15 +360,15 @@ Unpacking gettext (from .../gettext_0.18.1.1-5+b1_s390x.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.11_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-5+b1_s390x.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_s390x.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.2-1_s390x.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_s390x.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390x.deb) ...
Selecting previously unselected package libblas-dev.
@@ -386,7 +376,7 @@ Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390x.deb) ...
Selecting previously unselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_s390x.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390x.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_s390x.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_s390x.deb) ...
Selecting previously unselected package liblapack-dev.
@@ -402,9 +392,9 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390x.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4+b1_s390x.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3+b1_s390x.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_s390x.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390x.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_s390x.deb) ...
Selecting previously unselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8+b1_s390x.deb) ...
Selecting previously unselected package libreadline-dev.
@@ -414,86 +404,84 @@ Unpacking zip (from .../archives/zip_3.0-4_s390x.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_s390x.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-3_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_s390x.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_s390x.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390x.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_s390x.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_s390x.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_s390x.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up bzip2 (1.0.6-1) ...
-Setting up libpipeline1 (1.2.0-5+b1) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4+b1) ...
-Setting up libffi5 (3.0.10-3+b1) ...
-Setting up libglib2.0-0 (2.30.2-4) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5+b1) ...
-Setting up libcroco3 (0.6.2-2+b1) ...
-Setting up libdatrie1 (0.2.5-2) ...
Setting up libexpat1 (2.0.1-7.2) ...
Setting up libfreetype6 (2.4.8-1) ...
-Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-5+b1) ...
-Setting up x11-common (1:7.6+9) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-2+b1) ...
-Setting up libpixman-1-0 (0.24.0-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
Setting up libxau6 (1:1.0.6-4) ...
Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.7-4+b1) ...
+Setting up libxcb1 (1.8-2) ...
Setting up libx11-data (2:1.4.4-4) ...
Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.7-4+b1) ...
-Setting up libxcb-shm0 (1.7-4+b1) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.16-2) ...
-Setting up libthai0 (0.1.16-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3+b1) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2+b1) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4+b1) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5+b1) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6+b1) ...
-Setting up man-db (2.6.0.2-3+b1) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2+b1) ...
-Setting up file (5.09-2+b1) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5+b1) ...
-Setting up cdbs (0.4.100) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15+b1) ...
Setting up gettext (0.18.1.1-5+b1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.11) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-5+b1) ...
-Setting up gfortran (4:4.6.2-1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
@@ -505,31 +493,31 @@ Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4+b1) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3+b1) ...
-Setting up libpng12-dev (1.2.46-3) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
Setting up libreadline6-dev (6.2-8+b1) ...
Setting up libreadline-dev (6.2-8+b1) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-3) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-1+b1 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-5+b1 gcc-4.6_4.6.2-5+b1 libc6-dev_2.13-21+b1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 linux-libc-dev_3.1.4-1
-Package versions: apt_0.8.15.9+b1 base-files_6.5+b1 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-1+b1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.100 coreutils_8.13-3+b1 cpp_4:4.6.2-1 cpp-4.6_4.6.2-5+b1 dash_0.5.7-2+b1 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1+b1 debhelper_8.9.11 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1+b1 dpatch_2.0.33 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.2-1 g++-4.6_4.6.2-5+b1 gcc_4:4.6.2-1 gcc-4.6_4.6.2-5+b1 gcc-4.6-base_4.6.2-5+b1 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.2-1 gfortran-4.6_4.6.2-5+b1 gnupg_1.4.11-3+b1 gpgv_1.4.11-3+b1 grep_2.9-2+b1 groff-base_1.21-6+b1 gzip_1.4-2+b1 hostname_3.06+b1 html2text_1.3.2a-15+b1 initscripts_2.88dsf-13.13+b1 insserv_1.14.0-2.1+b1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4+b1 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-21+b1 libc-dev-bin_2.13-21+b1 libc6_2.13-21+b1 libc6-dev_2.13-21+b1 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2+b1 libdatrie1_0.2.5-2 libdb5.1_5.1.25-11+b1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.6.2-5+b1 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.2-5+b1 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2+b1 libgomp1_4.6.2-5+b1 libice6_2:1.0.7-2+b1 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.09-2+b1 libmount1_2.19.1-5 libmpc2_0.9-4+b1 libmpfr4_3.1.0-3+b1 libncurses5_5.9-4+b1 libncurses5-dev_5.9-4+b1 libpam-modules_1.1.3-6+b1 libpam-modules-bin_1.1.3-6+b1 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6+b1 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4+b1 libpcre3-dev_8.12-4+b1 libpcrecpp0_8.12-4+b1 libpipeline1_1.2.0-5+b1 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.0-4+b1 libsepol1_2.1.0-1.1+b1 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.16-2 libthai0_0.1.16-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4+b1 libtinfo5_5.9-4+b1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-19+b1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4+b1 libxcb-shm0_1.7-4+b1 libxcb1_1.7-4+b1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5+b1 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.4-1 login_1:4.1.4.2+svn3283-3+b1 lsb-base_3.2-28 make_3.81-8.1+b1 man-db_2.6.0.2-3+b1 mawk_1.3.3-16+b1 mount_2.19.1-5 multiarch-support_2.13-21+b1 ncurses-base_5.9-4 ncurses-bin_5.9-4+b1 passwd_1:4.1.4.2+svn3283-3+b1 patch_2.6.1-2+b1 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p1-2+b1 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13+b1 sysvinit-utils_2.88dsf-13.13+b1 tar_1.26-3+b1 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-3 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3+b1 zlib1g-dev_1:1.2.3.4.dfsg-3+b1
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.7-1
+Package versions: apt_0.8.15.9+b1 base-files_6.5+b1 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3+b1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1+b1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1+b1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6+b1 gzip_1.4-2+b1 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2+b1 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-3+b1 libncurses5_5.9-4+b1 libncurses5-dev_5.9-4+b1 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4+b1 libpcre3-dev_8.12-4+b1 libpcrecpp0_8.12-4+b1 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4+b1 libtinfo5_5.9-4+b1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.7-1 login_1:4.1.5-1 lsb-base_3.2+Debian29 make_3.81-8.1+b1 man-db_2.6.1-1 mawk_1.3.3-16+b1 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4+b1 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -540,12 +528,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -555,8 +543,8 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture s390x
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -564,9 +552,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -577,6 +565,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -587,47 +588,53 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -639,18 +646,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -658,12 +667,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -672,31 +686,57 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.0-1_s390x.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.3-1_s390x.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111204-1501
+Build finished at 20120307-0450
-r-bioc-limma_3.10.0-1_s390x.changes:
+r-bioc-limma_3.10.3-1_s390x.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390x
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
@@ -704,35 +744,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 1267767968d03f7cd721190a1cebd33ca2c31c8d 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+ 97a42e3c7baf0601db9e4d4dc25c87ddf292e967 1477070 r-bioc-limma_3.10.3-1_s390x.deb
Checksums-Sha256:
- a3402e9cfc25d0b9d56abdd994ab919246c6c815e8dc0415abc55b9e6ee66caa 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+ c1bbe80fecc80d0d7eeb8f38fb75a8e2cad2e421c7312a06ed79cdbee7a884f0 1477070 r-bioc-limma_3.10.3-1_s390x.deb
Files:
- 7db57adebddca21f0df35673f40f1437 1471634 gnu-r optional r-bioc-limma_3.10.0-1_s390x.deb
+ 1fd83a4a2cbff3f839d90b87e897b5fc 1477070 gnu-r optional r-bioc-limma_3.10.3-1_s390x.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_s390x.deb
+r-bioc-limma_3.10.3-1_s390x.deb
───────────────────────────────
new debian package, version 2.0.
- size 1471634 bytes: control archive= 1535 bytes.
- 769 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1477070 bytes: control archive= 1573 bytes.
+ 770 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1675
- Depends: libc6 (>= 2.13), r-base-core (>= 2.14.0~)
+ Installed-Size: 1681
+ Depends: libc6 (>= 2.13), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -744,51 +793,52 @@ r-bioc-limma_3.10.0-1_s390x.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9458 2011-12-04 15:01 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197384 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3783 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34556 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10632 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1353 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 456033 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3277 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2392 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6221 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1901 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 737661 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 42743 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 87742 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 966 2011-12-04 15:01 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1984 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 518 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 216 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5603 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2886 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1055 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6023 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2011-12-04 15:01 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 329 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2118 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2012-03-07 04:50 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 198253 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3773 2012-03-07 04:50 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2012-03-07 04:50 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2012-03-07 04:50 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10632 2012-03-07 04:50 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1352 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 458658 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3284 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6221 2012-03-07 04:50 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1901 2012-03-07 04:50 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 737677 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 89361 2012-03-07 04:50 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 966 2012-03-07 04:50 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 2173 2012-03-07 04:50 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 216 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5603 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1052 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6022 2012-03-07 04:50 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2012-03-07 04:50 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 560 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2302 2012-03-07 04:50 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -802,7 +852,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-8ea54fc1-535e-404d-acfd-f1f876076319/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-09f2bd23-781e-476e-9561-8510bdfcacac/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.10.3-1-s390x-ilG_dm
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -810,18 +860,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390x
-Build-Space: 5308
-Build-Time: 14
+Build-Space: 5336
+Build-Time: 16
Distribution: sid
-Install-Time: 31
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 42
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 83
-Source-Version: 3.10.0-1
-Space: 5308
+Package-Time: 107
+Source-Version: 3.10.3-1
+Space: 5336
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111204-1501
-Build needed 00:01:23, 5308k disc space
+Finished at 20120307-0450
+Build needed 00:01:47, 5336k disc space
Signature with key '96C8554F' requested:
diff --git a/sparc.log b/sparc.log
index 4d42dbe..1336d78 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,70 +1,72 @@
-From buildd at spontini.debian.org Fri Nov 04 07:36:09 2011
-Return-path: <buildd at spontini.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at schroeder.debian.org Wed Mar 07 04:59:48 2012
+Return-path: <buildd at schroeder.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at spontini.debian.org>)
- id 1RMEJt-0000WQ-Kq
- for logs at buildd.debian.org; Fri, 04 Nov 2011 07:36:09 +0000
-Received: from spontini.debian.org ([2607:f8f0:610:4000:a00:20ff:fea0:918b])
+ (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
+ id 1S58ya-0006Ml-8z
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:59:48 +0000
+Received: from schroeder.debian.org ([193.198.184.11])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=spontini.debian.org,
- EMAIL=hostmaster at spontini.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at spontini.debian.org>)
- id 1RMEJr-0007CJ-44
- for logs at buildd.debian.org; Fri, 04 Nov 2011 07:36:07 +0000
-Received: from buildd by spontini.debian.org with local (Exim 4.72)
- (envelope-from <buildd at spontini.debian.org>)
- id 1RMEJn-0003V0-OE; Fri, 04 Nov 2011 07:36:03 +0000
-Message-Id: <E1RMEJn-0003V0-OE at spontini.debian.org>
+ CN=schroeder.debian.org,
+ EMAIL=hostmaster at schroeder.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
+ id 1S58yZ-0008GE-7O
+ for logs at buildd.debian.org; Wed, 07 Mar 2012 04:59:47 +0000
+Received: from buildd by schroeder.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at schroeder.debian.org>)
+ id 1S58yX-00024l-Dj; Wed, 07 Mar 2012 04:59:45 +0000
+Message-Id: <E1S58yX-00024l-Dj at schroeder.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Fri, 4 Nov 2011 07:36:03 +0000
-From: buildd on spontini <buildd at spontini.debian.org>
-To: logs at buildd.debian.org,buildd-admin at spontini.debian.org
-Subject: Log for successful build of r-bioc-limma_3.10.0-1 on sparc (dist=sid)
-Key-Id: 0D4C040C
+Date: Wed, 7 Mar 2012 04:59:45 +0000
+From: buildd on schroeder <buildd at schroeder.debian.org>
+To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.3-1 on sparc (dist=sid)
+Key-Id: 24E4F805
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on spontini.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on schroeder.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.0-1 (sparc) 04 Nov 2011 07:27 ║
+║ r-bioc-limma 3.10.3-1 (sparc) 07 Mar 2012 04:52 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.0-1
-Source Version: 3.10.0-1
+Version: 3.10.3-1
+Source Version: 3.10.3-1
Architecture: sparc
-Get:1 http://incoming.debian.org unstable InRelease [146 kB]
-Get:2 http://mirror-ubc.debian.org unstable InRelease [146 kB]
+Get:1 http://ftp.hr.debian.org unstable InRelease [197 kB]
+Get:2 http://incoming.debian.org unstable InRelease [197 kB]
+Get:3 http://ftp.hr.debian.org unstable/main Sources [6231 kB]
+Get:4 http://ftp.hr.debian.org unstable/contrib Sources [55.0 kB]
+Get:5 http://ftp.hr.debian.org unstable/non-free Sources [98.8 kB]
Ign http://incoming.debian.org InRelease
-Get:3 http://incoming.debian.org Release.gpg [836 B]
-Get:4 http://incoming.debian.org Release [1604 B]
-Get:5 http://mirror-ubc.debian.org unstable/main Sources [5890 kB]
-Get:6 http://incoming.debian.org unstable/main Sources [5890 kB]
-Get:7 http://mirror-ubc.debian.org unstable/contrib Sources [56.9 kB]
-Get:8 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
-Get:9 http://mirror-ubc.debian.org unstable/main sparc Packages [7652 kB]
-Get:10 http://mirror-ubc.debian.org unstable/contrib sparc Packages [55.4 kB]
-Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
-Get:11 http://mirror-ubc.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
-Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
-Get:14 http://incoming.debian.org unstable/main sparc Packages [7652 kB]
-Get:15 http://incoming.debian.org unstable/contrib sparc Packages [55.4 kB]
+Get:6 http://ftp.hr.debian.org unstable/main sparc Packages [5757 kB]
+Get:7 http://incoming.debian.org Release.gpg [836 B]
+Get:8 http://incoming.debian.org Release [1616 B]
+Get:9 http://incoming.debian.org unstable/main Sources [6231 kB]
+Get:10 http://ftp.hr.debian.org unstable/contrib sparc Packages [36.9 kB]
+Ign http://ftp.hr.debian.org unstable/contrib TranslationIndex
+Get:11 http://ftp.hr.debian.org unstable/main TranslationIndex [2154 B]
+Get:12 http://ftp.hr.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:13 http://ftp.hr.debian.org unstable/main Translation-en [3906 kB]
+Get:14 http://incoming.debian.org unstable/contrib Sources [55.0 kB]
+Get:15 http://incoming.debian.org unstable/non-free Sources [98.8 kB]
+Get:16 http://incoming.debian.org unstable/main sparc Packages [5757 kB]
+Get:17 http://incoming.debian.org unstable/contrib sparc Packages [36.9 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:17 http://incoming.debian.org Sources [31.5 kB]
-Get:18 http://incoming.debian.org Packages [552 kB]
+Get:18 http://incoming.debian.org unstable/main TranslationIndex [2154 B]
+Get:19 http://incoming.debian.org Sources [63.4 kB]
+Get:20 http://incoming.debian.org Packages [849 kB]
+Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.1 kB]
+Get:22 http://incoming.debian.org unstable/main Translation-en [3906 kB]
Ign http://incoming.debian.org Translation-en
-Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 28.4 MB in 1min 4s (438 kB/s)
+Fetched 33.6 MB in 51s (653 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -85,11 +87,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 974 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
-Fetched 974 kB in 1s (634 kB/s)
+Need to get 977 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (dsc) [1995 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (tar) [973 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.3-1 (diff) [2738 B]
+Fetched 977 kB in 4s (237 kB/s)
Download complete and in download only mode
Check arch
@@ -103,292 +105,260 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1)
+fakeroot: already installed (1.18.2-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
+base-files: already installed (6.7)
+base-passwd: already installed (3.5.24)
+bash: already installed (4.2-1)
coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
-findutils: already installed (4.4.2-1+b2)
-grep: already installed (2.9-2)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-2)
-ncurses-bin: already installed (5.9-2)
-perl-base: already installed (5.12.4-6)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.2.1)
+diffutils: already installed (1:3.2-2)
+dpkg: already installed (1.16.1.2)
+e2fsprogs: already installed (1.42.1-2)
+findutils: already installed (4.4.2-4)
+grep: already installed (2.10-1)
+gzip: already installed (1.4-2)
+hostname: already installed (3.11)
+ncurses-base: already installed (5.9-4)
+ncurses-bin: already installed (5.9-4)
+perl-base: already installed (5.14.2-9)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.12)
-sysvinit: already installed (2.88dsf-13.12)
-tar: already installed (1.26-2)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-21)
-libc6-dev-sparc64: already installed (2.13-21)
-gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+login: already installed (1:4.1.5-1)
+sysvinit-utils: already installed (2.88dsf-22)
+sysvinit: already installed (2.88dsf-22)
+tar: already installed (1.26-4)
+bsdutils: already installed (1:2.20.1-4)
+mount: already installed (2.20.1-4)
+util-linux: already installed (2.20.1-4)
+libc6-dev: already installed (2.13-27)
+libc6-dev-sparc64: already installed (2.13-27)
+gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.8
+Using default version 9.20120115
cdbs: missing
r-base-dev: missing
-Using default version 2.14.0-1
+Using default version 2.14.2-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- binutils-gold gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
x11-common xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 76 newly installed, 0 to remove and 8 not upgraded.
-Need to get 68.6 MB of archives.
-After this operation, 115 MB of additional disk space will be used.
-Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 sparc 4.6.2-3 [21.8 kB]
-Get:2 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base sparc 4.6.2-3 [136 kB]
-Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 sparc 1:4.6.2-3 [29.6 kB]
-Get:4 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 sparc 4.6.2-3 [3532 kB]
-Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev sparc 4.6.2-3 [1653 kB]
-Get:6 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 sparc 4.6.2-3 [5520 kB]
-Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 sparc 4.6.2-3 [3704 kB]
-Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 sparc 4.6.2-3 [321 kB]
-Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 sparc 1.2.0-4 [34.9 kB]
-Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 sparc 8.12-4 [231 kB]
-Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.28.8-1 [1508 kB]
-Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-5 [816 kB]
-Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 sparc 0.6.2-2 [106 kB]
-Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 sparc 0.2.4-3 [25.3 kB]
-Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 sparc 2.0.1-7.2 [128 kB]
-Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 sparc 2.4.7-2 [400 kB]
-Get:17 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:18 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:19 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 sparc 2.8.0-3 [277 kB]
-Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 sparc 4.6.2-3 [260 kB]
-Get:22 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
-Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libice6 sparc 2:1.0.7-2 [50.9 kB]
-Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 sparc 0.23.8-1 [376 kB]
-Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 sparc 1.2.46-3 [179 kB]
-Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 sparc 1:1.0.6-3 [16.1 kB]
-Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-3 [21.9 kB]
-Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 sparc 1.7-3 [41.0 kB]
-Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
-Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 sparc 2:1.4.4-2 [830 kB]
-Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 sparc 1.7-3 [15.5 kB]
-Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 sparc 1.7-3 [9284 B]
-Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
-Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 sparc 1.10.2-6.1 [912 kB]
-Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 sparc 0.1.15-2 [41.6 kB]
-Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
-Get:38 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig sparc 2.8.0-3 [334 kB]
-Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 sparc 1.29.4-2 [416 kB]
-Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 sparc 8.12-4 [111 kB]
-Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 sparc 2:1.2.0-2 [28.6 kB]
-Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 sparc 8c-2 [136 kB]
-Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 sparc 3.9.5-2 [186 kB]
-Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
-Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
-Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 sparc 1:1.2.1-2 [15.9 kB]
-Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
-Get:48 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils sparc 8.2.3 [206 kB]
-Get:49 http://mirror-ubc.debian.org/debian/ unstable/main groff-base sparc 1.21-6 [1155 kB]
-Get:50 http://mirror-ubc.debian.org/debian/ unstable/main man-db sparc 2.6.0.2-2 [1005 kB]
-Get:51 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 sparc 5.09-2 [245 kB]
-Get:52 http://mirror-ubc.debian.org/debian/ unstable/main file sparc 5.09-2 [51.5 kB]
-Get:53 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-5 [140 kB]
-Get:54 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
-Get:55 http://mirror-ubc.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:56 http://mirror-ubc.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-5 [1983 kB]
-Get:57 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:58 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:59 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
-Get:60 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
-Get:61 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 sparc 4.6.2-3 [4144 kB]
-Get:62 http://mirror-ubc.debian.org/debian/ unstable/main gfortran sparc 4:4.6.1-3 [1132 B]
-Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf sparc 1.2.20110419-2 [188 kB]
-Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev sparc 1.2.20110419-2 [200 kB]
-Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev sparc 1.0.5-7 [35.8 kB]
-Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev sparc 8c-2 [239 kB]
-Get:67 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf sparc 3.3.1-1 [3975 kB]
-Get:68 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev sparc 3.3.1-1 [4389 kB]
-Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev sparc 5.9-2 [67.9 kB]
-Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev sparc 5.9-2 [415 kB]
-Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
-Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
-Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev sparc 8.12-4 [312 kB]
-Get:74 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
-Get:75 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev sparc 1.2.46-3 [262 kB]
-Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev sparc 6.2-7 [258 kB]
-Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev sparc 6.2-7 [892 B]
-Get:78 http://mirror-ubc.debian.org/debian/ unstable/main zip sparc 3.0-4 [335 kB]
-Get:79 http://mirror-ubc.debian.org/debian/ unstable/main unzip sparc 6.0-5 [191 kB]
-Get:80 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 sparc 8.5.10-1 [1599 kB]
-Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 sparc 8.5.10-1 [1143 kB]
-Get:83 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core sparc 2.14.0-1 [19.0 MB]
-Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+0 upgraded, 76 newly installed, 0 to remove and 5 not upgraded.
+Need to get 55.1 MB of archives.
+After this operation, 114 MB of additional disk space will be used.
+Get:1 http://ftp.hr.debian.org/debian/ unstable/main libpipeline1 sparc 1.2.1-1 [35.8 kB]
+Get:2 http://ftp.hr.debian.org/debian/ unstable/main libmagic1 sparc 5.10-1 [248 kB]
+Get:3 http://ftp.hr.debian.org/debian/ unstable/main libpcre3 sparc 8.12-4 [231 kB]
+Get:4 http://ftp.hr.debian.org/debian/ unstable/main libexpat1 sparc 2.0.1-7.2 [128 kB]
+Get:5 http://ftp.hr.debian.org/debian/ unstable/main libfreetype6 sparc 2.4.8-1 [401 kB]
+Get:6 http://ftp.hr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:7 http://ftp.hr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:8 http://ftp.hr.debian.org/debian/ unstable/main libfontconfig1 sparc 2.8.0-3.1 [274 kB]
+Get:9 http://ftp.hr.debian.org/debian/ unstable/main libpixman-1-0 sparc 0.24.4-1 [373 kB]
+Get:10 http://ftp.hr.debian.org/debian/ unstable/main libpng12-0 sparc 1.2.47-1 [181 kB]
+Get:11 http://ftp.hr.debian.org/debian/ unstable/main libxau6 sparc 1:1.0.6-4 [16.1 kB]
+Get:12 http://ftp.hr.debian.org/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-4 [22.0 kB]
+Get:13 http://ftp.hr.debian.org/debian/ unstable/main libxcb1 sparc 1.8-2 [39.5 kB]
+Get:14 http://ftp.hr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:15 http://ftp.hr.debian.org/debian/ unstable/main libx11-6 sparc 2:1.4.4-4 [830 kB]
+Get:16 http://ftp.hr.debian.org/debian/ unstable/main libxcb-render0 sparc 1.8-2 [15.6 kB]
+Get:17 http://ftp.hr.debian.org/debian/ unstable/main libxcb-shm0 sparc 1.8-2 [9684 B]
+Get:18 http://ftp.hr.debian.org/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
+Get:19 http://ftp.hr.debian.org/debian/ unstable/main libcairo2 sparc 1.10.2-7 [890 kB]
+Get:20 http://ftp.hr.debian.org/debian/ unstable/main libffi5 sparc 3.0.10-3 [22.7 kB]
+Get:21 http://ftp.hr.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.30.2-6 [1694 kB]
+Get:22 http://ftp.hr.debian.org/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-7 [819 kB]
+Get:23 http://ftp.hr.debian.org/debian/ unstable/main libcroco3 sparc 0.6.4-2 [135 kB]
+Get:24 http://ftp.hr.debian.org/debian/ unstable/main libdatrie1 sparc 0.2.5-3 [26.1 kB]
+Get:25 http://ftp.hr.debian.org/debian/ unstable/main libgfortran3 sparc 4.6.3-1 [260 kB]
+Get:26 http://ftp.hr.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
+Get:27 http://ftp.hr.debian.org/debian/ unstable/main libice6 sparc 2:1.0.7-2 [50.9 kB]
+Get:28 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8 sparc 8d-1 [137 kB]
+Get:29 http://ftp.hr.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
+Get:30 http://ftp.hr.debian.org/debian/ unstable/main libthai0 sparc 0.1.17-1 [43.0 kB]
+Get:31 http://ftp.hr.debian.org/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
+Get:32 http://ftp.hr.debian.org/debian/ unstable/main fontconfig sparc 2.8.0-3.1 [332 kB]
+Get:33 http://ftp.hr.debian.org/debian/ unstable/main libpango1.0-0 sparc 1.29.4-2 [416 kB]
+Get:34 http://ftp.hr.debian.org/debian/ unstable/main libpcrecpp0 sparc 8.12-4 [111 kB]
+Get:35 http://ftp.hr.debian.org/debian/ unstable/main libsm6 sparc 2:1.2.0-2 [28.6 kB]
+Get:36 http://ftp.hr.debian.org/debian/ unstable/main libtiff4 sparc 3.9.6-1 [187 kB]
+Get:37 http://ftp.hr.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
+Get:38 http://ftp.hr.debian.org/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
+Get:39 http://ftp.hr.debian.org/debian/ unstable/main libxss1 sparc 1:1.2.1-2 [15.9 kB]
+Get:40 http://ftp.hr.debian.org/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
+Get:41 http://ftp.hr.debian.org/debian/ unstable/main bsdmainutils sparc 9.0.1 [205 kB]
+Get:42 http://ftp.hr.debian.org/debian/ unstable/main groff-base sparc 1.21-6 [1155 kB]
+Get:43 http://ftp.hr.debian.org/debian/ unstable/main man-db sparc 2.6.1-1 [1039 kB]
+Get:44 http://ftp.hr.debian.org/debian/ unstable/main file sparc 5.10-1 [52.5 kB]
+Get:45 http://ftp.hr.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-5 [140 kB]
+Get:46 http://ftp.hr.debian.org/debian/ unstable/main cdbs all 0.4.105 [78.7 kB]
+Get:47 http://ftp.hr.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:48 http://ftp.hr.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-5 [1983 kB]
+Get:49 http://ftp.hr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:50 http://ftp.hr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:51 http://ftp.hr.debian.org/debian/ unstable/main debhelper all 9.20120115 [693 kB]
+Get:52 http://ftp.hr.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
+Get:53 http://ftp.hr.debian.org/debian/ unstable/main gfortran-4.6 sparc 4.6.3-1 [4152 kB]
+Get:54 http://ftp.hr.debian.org/debian/ unstable/main gfortran sparc 4:4.6.2-4 [1132 B]
+Get:55 http://ftp.hr.debian.org/debian/ unstable/main libblas3gf sparc 1.2.20110419-2 [188 kB]
+Get:56 http://ftp.hr.debian.org/debian/ unstable/main libblas-dev sparc 1.2.20110419-2 [200 kB]
+Get:57 http://ftp.hr.debian.org/debian/ unstable/main libbz2-dev sparc 1.0.6-1 [36.0 kB]
+Get:58 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8-dev sparc 8d-1 [243 kB]
+Get:59 http://ftp.hr.debian.org/debian/ unstable/main liblapack3gf sparc 3.3.1-1 [3975 kB]
+Get:60 http://ftp.hr.debian.org/debian/ unstable/main liblapack-dev sparc 3.3.1-1 [4389 kB]
+Get:61 http://ftp.hr.debian.org/debian/ unstable/main libtinfo-dev sparc 5.9-4 [97.8 kB]
+Get:62 http://ftp.hr.debian.org/debian/ unstable/main libncurses5-dev sparc 5.9-4 [385 kB]
+Get:63 http://ftp.hr.debian.org/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
+Get:64 http://ftp.hr.debian.org/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
+Get:65 http://ftp.hr.debian.org/debian/ unstable/main libpcre3-dev sparc 8.12-4 [312 kB]
+Get:66 http://ftp.hr.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.6.dfsg-2 [209 kB]
+Get:67 http://ftp.hr.debian.org/debian/ unstable/main libpng12-dev sparc 1.2.47-1 [264 kB]
+Get:68 http://ftp.hr.debian.org/debian/ unstable/main libreadline6-dev sparc 6.2-8 [258 kB]
+Get:69 http://ftp.hr.debian.org/debian/ unstable/main libreadline-dev sparc 6.2-8 [892 B]
+Get:70 http://ftp.hr.debian.org/debian/ unstable/main zip sparc 3.0-4 [335 kB]
+Get:71 http://ftp.hr.debian.org/debian/ unstable/main unzip sparc 6.0-5 [191 kB]
+Get:72 http://ftp.hr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:73 http://ftp.hr.debian.org/debian/ unstable/main tcl8.5 sparc 8.5.11-1 [1579 kB]
+Get:74 http://ftp.hr.debian.org/debian/ unstable/main tk8.5 sparc 8.5.11-1 [1122 kB]
+Get:75 http://ftp.hr.debian.org/debian/ unstable/main r-base-core sparc 2.14.2-1 [20.1 MB]
+Get:76 http://ftp.hr.debian.org/debian/ unstable/main r-base-dev all 2.14.2-1 [3894 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 68.6 MB in 18s (3795 kB/s)
-(Reading database ... 10913 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.2-1 (using .../libgomp1_4.6.2-3_sparc.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.2-1 (using .../gcc-4.6-base_4.6.2-3_sparc.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.2-3) ...
-(Reading database ... 10913 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.2-1 (using .../libgcc1_1%3a4.6.2-3_sparc.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.2-3) ...
-(Reading database ... 10913 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.2-1 (using .../cpp-4.6_4.6.2-3_sparc.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.2-1 (using .../libstdc++6-4.6-dev_4.6.2-3_sparc.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.2-1 (using .../g++-4.6_4.6.2-3_sparc.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.2-1 (using .../gcc-4.6_4.6.2-3_sparc.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.2-1 (using .../libstdc++6_4.6.2-3_sparc.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.2-3) ...
+Fetched 55.1 MB in 32s (1698 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10913 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_sparc.deb) ...
+(Reading database ... 11074 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_sparc.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_sparc.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_sparc.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_sparc.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_sparc.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_sparc.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_sparc.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_sparc.deb) ...
Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_sparc.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_sparc.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_sparc.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_sparc.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_sparc.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_sparc.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_sparc.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_sparc.deb) ...
Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_sparc.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_sparc.deb) ...
Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_sparc.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_sparc.deb) ...
Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_sparc.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_sparc.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_sparc.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_sparc.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_sparc.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_sparc.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_sparc.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_sparc.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_sparc.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_sparc.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_sparc.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_sparc.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_sparc.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_sparc.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_sparc.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_sparc.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_sparc.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_sparc.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_sparc.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_sparc.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_sparc.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_sparc.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_sparc.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_sparc.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_sparc.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_sparc.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_sparc.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_sparc.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_sparc.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_sparc.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_sparc.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_sparc.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_sparc.deb) ...
Selecting previously unselected package libxext6.
@@ -398,19 +368,17 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_sparc.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_sparc.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_sparc.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_sparc.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_sparc.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_sparc.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_sparc.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_sparc.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_sparc.deb) ...
+Unpacking file (from .../archives/file_5.10-1_sparc.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_sparc.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
Selecting previously unselected package gettext.
@@ -418,31 +386,31 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_sparc.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_sparc.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_sparc.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_sparc.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_sparc.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_sparc.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_sparc.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_sparc.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_sparc.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_sparc.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_sparc.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_sparc.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_sparc.deb) ...
Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_sparc.deb) ...
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_sparc.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_sparc.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_sparc.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_sparc.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -450,137 +418,132 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_sparc.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_sparc.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_sparc.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_sparc.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_sparc.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_sparc.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_sparc.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_sparc.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_sparc.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_sparc.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_sparc.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_sparc.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_sparc.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_sparc.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_sparc.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_sparc.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_sparc.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
-Setting up libgomp1 (4.6.2-3) ...
-Setting up cpp-4.6 (4.6.2-3) ...
-Setting up gcc-4.6 (4.6.2-3) ...
-Setting up libpipeline1 (1.2.0-4) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8-2) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libpng12-0 (1.2.46-3) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (8.2.3) ...
+Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
-Setting up libstdc++6-4.6-dev (4.6.2-3) ...
-Setting up g++-4.6 (4.6.2-3) ...
+Setting up r-base-dev (2.14.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b2 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libc6-dev-sparc64_2.13-21 libc6-sparc64_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-3 libsepol1_2.1.0-1.1 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.6-1
+Package versions: apt_0.8.15.9 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libc6-dev-sparc64_2.13-27 libc6-sparc64_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.6-1 login_1:4.1.5-1 lsb-base_3.2+Debian29 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -591,12 +554,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Mar 7 04:21:28 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
-dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
+dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
Check disc space
────────────────
@@ -606,18 +569,18 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.0-1
- dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: source version 3.10.3-1
+ dpkg-source --before-build r-bioc-limma-3.10.3
dpkg-buildpackage: host architecture sparc
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -628,6 +591,19 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
@@ -638,10 +614,10 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -649,36 +625,42 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-limma.substvars
+ rm -f debian/r-bioc-limma.*.debhelper
+ rm -rf debian/r-bioc-limma/
dh_installdirs -A
+ install -d debian/r-bioc-limma
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-limma/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/src'
gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
-installing to /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/src'
+installing to /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -690,18 +672,20 @@ installing to /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
+ install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
dh_installinfo -pr-bioc-limma
@@ -709,12 +693,17 @@ dh_installmenu -pr-bioc-limma
dh_installcron -pr-bioc-limma
dh_installinit -pr-bioc-limma
dh_installdebconf -pr-bioc-limma
+ install -o 0 -g 0 -d debian/r-bioc-limma/DEBIAN
dh_installemacsen -pr-bioc-limma
dh_installcatalogs -pr-bioc-limma
+ grep -s -v '^misc:Depends=' debian/r-bioc-limma.substvars > debian/r-bioc-limma.substvars.new || true
+ mv debian/r-bioc-limma.substvars.new debian/r-bioc-limma.substvars
dh_installpam -pr-bioc-limma
dh_installlogrotate -pr-bioc-limma
dh_installlogcheck -pr-bioc-limma
dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog.Debian
+ install -o 0 -g 0 -p -m644 inst/doc/changelog.txt debian/r-bioc-limma/usr/share/doc/r-bioc-limma/changelog
dh_installudev -pr-bioc-limma
dh_lintian -pr-bioc-limma
dh_bugfiles -pr-bioc-limma
@@ -723,67 +712,102 @@ dh_link -pr-bioc-limma
dh_installmime -pr-bioc-limma
dh_installgsettings -pr-bioc-limma
dh_strip -pr-bioc-limma
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
+ cd debian/r-bioc-limma
+ chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ cd '/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi/r-bioc-limma-3.10.3'
dh_fixperms -pr-bioc-limma
+ find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-limma/usr/share/doc -type f ! -regex 'debian/r-bioc-limma/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-limma/usr/share/man debian/r-bioc-limma/usr/man/ debian/r-bioc-limma/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-limma/usr/lib/perl5 debian/r-bioc-limma/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-limma/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-limma
+ rm -f debian/r-bioc-limma/DEBIAN/shlibs
dh_installdeb -pr-bioc-limma
dh_perl -pr-bioc-limma
dh_shlibdeps -pr-bioc-limma
+ dpkg-shlibdeps -Tdebian/r-bioc-limma.substvars debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_gencontrol -pr-bioc-limma
+ echo misc:Depends= >> debian/r-bioc-limma.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+ chmod 644 debian/r-bioc-limma/DEBIAN/control
+ chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (spontini) <buildd_sparc-spontini at buildd.debian.org> >../r-bioc-limma_3.10.0-1_sparc.changes
+ dpkg-deb --build debian/r-bioc-limma ..
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../r-bioc-limma_3.10.3-1_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.10.0
+ dpkg-source --after-build r-bioc-limma-3.10.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111104-0735
+Build finished at 20120307-0459
-r-bioc-limma_3.10.0-1_sparc.changes:
+r-bioc-limma_3.10.3-1_sparc.changes:
Format: 1.8
-Date: Fri, 04 Nov 2011 13:35:49 +0900
+Date: Wed, 07 Mar 2012 13:13:47 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: sparc
-Version: 3.10.0-1
+Version: 3.10.3-1
Distribution: sid
Urgency: low
-Maintainer: sparc Build Daemon (spontini) <buildd_sparc-spontini at buildd.debian.org>
+Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.0-1) unstable; urgency=low
+ r-bioc-limma (3.10.3-1) unstable; urgency=low
+ .
+ 0ddb00d New Upstream version.
+ .
+ [ Carlos Borroto ]
+ afe6f31 Fix for watch file.
.
- [eebb062] New upstream release (Bioconductor 2.9).
- [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+ [ Charles Plessy ]
+ 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
+ 4713d97 Obtain ${R:Depends} through r-base-dev.
+ 756a1da Conforms to Policy 3.9.3.
+ 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 2db0d3d Verbose Debhelper.
Checksums-Sha1:
- 3366454e66afeee7f0f780df0d4815aee6dfcd57 1468994 r-bioc-limma_3.10.0-1_sparc.deb
+ 6be130454f073221ac457a7b67be917fcf3bcd7d 1474484 r-bioc-limma_3.10.3-1_sparc.deb
Checksums-Sha256:
- 6f8b40ef4030c9967d3110cbaaae840a8c6351d0b363048949d4b3318cd7a90f 1468994 r-bioc-limma_3.10.0-1_sparc.deb
+ 1f7fb04dfd31cd506933b122ca88376f5e6dfa5797c8c81407c3e61a43dfd819 1474484 r-bioc-limma_3.10.3-1_sparc.deb
Files:
- 6dffbcccd8dcaa387f19b434ddc57a77 1468994 gnu-r optional r-bioc-limma_3.10.0-1_sparc.deb
+ 1d069de1ad8434f09d3e61d4f8aa62fe 1474484 gnu-r optional r-bioc-limma_3.10.3-1_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.0-1_sparc.deb
+r-bioc-limma_3.10.3-1_sparc.deb
───────────────────────────────
new debian package, version 2.0.
- size 1468994 bytes: control archive= 1539 bytes.
- 768 bytes, 16 lines control
- 2297 bytes, 30 lines md5sums
+ size 1474484 bytes: control archive= 1565 bytes.
+ 769 bytes, 16 lines control
+ 2372 bytes, 31 lines md5sums
Package: r-bioc-limma
- Version: 3.10.0-1
+ Version: 3.10.3-1
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1672
- Depends: libc6 (>= 2.6), r-base-core (>= 2.14.0~)
+ Installed-Size: 1678
+ Depends: libc6 (>= 2.6), r-base-core (>= 2.14.2-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -795,51 +819,52 @@ r-bioc-limma_3.10.0-1_sparc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2118 2011-11-04 07:33 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 329 2011-11-04 07:33 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
-drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2011-11-04 07:34 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-04 07:34 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 737661 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1711 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 87742 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1230 2011-11-04 07:34 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 970 2011-11-04 07:34 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8168 2011-11-04 07:35 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5603 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 6023 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 518 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1051 2011-11-04 07:34 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 2886 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 216 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/vignette.rds
-drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3787 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 383 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 197383 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 1901 2011-11-04 07:34 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 9458 2011-11-04 07:35 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 3281 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2392 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1352 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6221 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 455465 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1984 2011-11-04 07:34 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 27284 2012-03-03 02:22 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2302 2012-03-07 04:58 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 264 2012-03-07 04:58 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 560 2012-03-07 04:58 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-03-07 04:58 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-07 04:58 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2012-03-07 04:59 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2012-03-07 04:59 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2012-03-07 04:59 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1901 2012-03-07 04:58 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6221 2012-03-07 04:59 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3263 2012-03-07 04:59 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 458053 2012-03-07 04:59 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1348 2012-03-07 04:59 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 2392 2012-03-07 04:59 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 89361 2012-03-07 04:59 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 737677 2012-03-07 04:59 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1711 2012-03-07 04:59 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2012-03-07 04:59 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 42743 2012-03-07 04:59 ./usr/lib/R/site-library/limma/doc/limma.pdf
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 6022 2012-03-07 04:59 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2012-03-07 04:59 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 216 2012-03-07 04:59 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2012-03-07 04:59 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 2886 2012-03-07 04:59 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1052 2012-03-07 04:58 ./usr/lib/R/site-library/limma/Meta/package.rds
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3768 2012-03-07 04:59 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 198251 2012-03-07 04:59 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 383 2012-03-07 04:59 ./usr/lib/R/site-library/limma/R/limma
+-rwxr-xr-x root/root 1230 2012-03-07 04:59 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2012-03-07 04:59 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8168 2012-03-07 04:59 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 2173 2012-03-07 04:59 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 970 2012-03-07 04:58 ./usr/lib/R/site-library/limma/DESCRIPTION
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -853,7 +878,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-6e71b994-3344-410c-9600-187634e8e52d/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-07cc4502-9ed0-4b70-b5c7-f9ebce6805c4/build/buildd-r-bioc-limma_3.10.3-1-sparc-oFledi
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -861,18 +886,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: sparc
-Build-Space: 5300
-Build-Time: 133
+Build-Space: 5328
+Build-Time: 55
Distribution: sid
-Install-Time: 245
-Job: r-bioc-limma_3.10.0-1
+Install-Time: 308
+Job: r-bioc-limma_3.10.3-1
Package: r-bioc-limma
-Package-Time: 488
-Source-Version: 3.10.0-1
-Space: 5300
+Package-Time: 440
+Source-Version: 3.10.3-1
+Space: 5328
Status: successful
-Version: 3.10.0-1
+Version: 3.10.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111104-0735
-Build needed 00:08:08, 5300k disc space
-Signature with key '0D4C040C' requested:
+Finished at 20120307-0459
+Build needed 00:07:20, 5328k disc space
+Signature with key '24E4F805' requested:
--
linear models for microarray data
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