[med-svn] [SCM] r-bioc-limma branch, meta, updated. meta/3.10.0-1-3-ga58ca49
Charles Plessy
plessy at debian.org
Thu Apr 12 02:50:54 UTC 2012
The following commit has been merged in the meta branch:
commit a58ca494d41a7f6417de285eb53e1172b3db71bb
Author: Charles Plessy <plessy at debian.org>
Date: Thu Apr 12 11:50:02 2012 +0900
Build and uploaded r-bioc-limma 3.12.0~dfsg-1.
diff --git a/amd64.changes b/amd64.changes
index 6690e33..06dc811 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Wed, 07 Mar 2012 13:13:47 +0900
+Date: Thu, 12 Apr 2012 11:40:40 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: source amd64
-Version: 3.10.3-1
+Version: 3.12.0~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,49 +14,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.3-1) unstable; urgency=low
- .
- 0ddb00d New Upstream version.
- .
- [ Carlos Borroto ]
- afe6f31 Fix for watch file.
+ r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
- 4713d97 Obtain ${R:Depends} through r-base-dev.
- 756a1da Conforms to Policy 3.9.3.
- 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
- 2db0d3d Verbose Debhelper.
+ 2d3420e Imported Upstream version 3.12.0~dfsg
+ 4bbb8e4 Document LIMMA's copyright as a whole.
+ .
+ [ Andreas Tille ]
+ 8a61a4c Obtain references from inst/CITATION
Checksums-Sha1:
- 597c62bc298878dc214ef14bdc082eb1135ceb1f 1995 r-bioc-limma_3.10.3-1.dsc
- 2f3b66b4aa556abb79dda96fe7c7f2924ed315df 972612 r-bioc-limma_3.10.3.orig.tar.gz
- e6c12bac2f123e2538b27dbf01f04b7f29cdb363 2738 r-bioc-limma_3.10.3-1.diff.gz
- 1d22764e4372f52d34d41665804d3d8154598f6d 1472744 r-bioc-limma_3.10.3-1_amd64.deb
+ 876cd4739d3ae6d6a036bb35618a72e3a59e03a9 2030 r-bioc-limma_3.12.0~dfsg-1.dsc
+ b8557dac54643997e17913245385b2ab6cac8c01 282812 r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ 3a36aa2745e375bcf3bee1f0be18e10da0f19fd7 3098 r-bioc-limma_3.12.0~dfsg-1.diff.gz
+ 450a6c80a4b087db813f841637d54bc6434f7277 805696 r-bioc-limma_3.12.0~dfsg-1_amd64.deb
Checksums-Sha256:
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- 0431260bbd510a856218fc2a8b0181e83c48dc8a9089f2519f47c19d57bb1c55 972612 r-bioc-limma_3.10.3.orig.tar.gz
- 1b60bcf1a2e1fc2c8c8a68c6da0aeb7d05154b512f93a465b0e7ca3c214fb2da 2738 r-bioc-limma_3.10.3-1.diff.gz
- ea008699e4e0524d96a27d27a94258bc53d046218328bd6ec74f459bc5fd2175 1472744 r-bioc-limma_3.10.3-1_amd64.deb
+ 12525e56b612d44cebd68f32cb645acf9f4708858682ef62ec87f9c666a46082 2030 r-bioc-limma_3.12.0~dfsg-1.dsc
+ b6d1b2ea73dcee00092c5b2df553a76206be26220813cbdac06287fbd5294500 282812 r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ 48c92c920e283293764dba120553efa4efb8c00be5704fc22ec4842e7a69d41a 3098 r-bioc-limma_3.12.0~dfsg-1.diff.gz
+ cce5635f18fe8f51070d4caf586ee50827bd0e2da161565d05f12c06a0b38acf 805696 r-bioc-limma_3.12.0~dfsg-1_amd64.deb
Files:
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- e0ede45f23425f0e5ac4beb66c2d3b2f 972612 gnu-r optional r-bioc-limma_3.10.3.orig.tar.gz
- fc332d5247809d91edfb76b64878ac66 2738 gnu-r optional r-bioc-limma_3.10.3-1.diff.gz
- c2f75d3913c43191b3561d63a9ab5003 1472744 gnu-r optional r-bioc-limma_3.10.3-1_amd64.deb
+ 2a3c13863987e87a396b69e47707b607 2030 gnu-r optional r-bioc-limma_3.12.0~dfsg-1.dsc
+ e257693c72260d1ca3eb8602c442642e 282812 gnu-r optional r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ a465d356326fb766d6f5cf6501ae4744 3098 gnu-r optional r-bioc-limma_3.12.0~dfsg-1.diff.gz
+ 690f9c13fe136bd849b136ce088134f8 805696 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_amd64.deb
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diff --git a/amd64.log b/amd64.log
index a372553..28d894e 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,68 +1,32 @@
sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.10.3-1 (amd64) 07 Mar 2012 13:14 ║
+║ r-bioc-limma 3.12.0~dfsg-1 (amd64) 12 Apr 2012 11:42 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.10.3-1
-Source Version: 3.10.3-1
+Version: 3.12.0~dfsg-1
+Source Version: 3.12.0~dfsg-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-uBqls4/r-bioc-limma-3.10.3' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-uBqls4' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-706ea2f9-44a2-4b0f-937a-f6bd486fc7a0' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-limma-X7_eNq/r-bioc-limma-3.12.0~dfsg' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-limma-X7_eNq' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-b38d27c1-20f1-4265-900b-a1e78d65d190' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Get:1 http://ftp.jp.debian.org sid InRelease [197 kB]
-Get:2 http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex [3984 B]
-Get:3 http://ftp.jp.debian.org sid/main TranslationIndex [2154 B]
-Get:4 http://ftp.jp.debian.org sid/main amd64 2012-03-06-2016.18.pdiff [35.1 kB]
-Get:5 http://ftp.jp.debian.org sid/main amd64 2012-03-06-2016.18.pdiff [35.1 kB]
-Get:6 http://ftp.jp.debian.org sid/main Translation-en [3906 kB]
-Fetched 4144 kB in 1s (2344 kB/s)
+Hit http://ftp.jp.debian.org sid InRelease
+Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
+Hit http://ftp.jp.debian.org sid/main TranslationIndex
+Hit http://ftp.jp.debian.org sid/main Translation-en
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages will be upgraded:
- apt tzdata
-2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Need to get 2706 kB of archives.
-After this operation, 367 kB of additional disk space will be used.
-Get:1 http://ftp.jp.debian.org/debian/ sid/main apt amd64 0.8.15.10 [2232 kB]
-Get:2 http://ftp.jp.debian.org/debian/ sid/main tzdata all 2012b-1 [474 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 2706 kB in 0s (3669 kB/s)
-(Reading database ... 10885 files and directories currently installed.)
-Preparing to replace apt 0.8.15.9 (using .../apt_0.8.15.10_amd64.deb) ...
-Unpacking replacement apt ...
-Setting up apt (0.8.15.10) ...
-gpg: key F42584E6: "Lenny Stable Release Key <debian-release at lists.debian.org>" not changed
-gpg: key 55BE302B: "Debian Archive Automatic Signing Key (5.0/lenny) <ftpmaster at debian.org>" not changed
-gpg: key 6D849617: "Debian-Volatile Archive Automatic Signing Key (5.0/lenny)" not changed
-gpg: key B98321F9: "Squeeze Stable Release Key <debian-release at lists.debian.org>" not changed
-gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) <ftpmaster at debian.org>" not changed
-gpg: Total number processed: 5
-gpg: unchanged: 5
-gpg: checking the trustdb
-gpg: WARNING: digest algorithm MD5 is deprecated
-gpg: please see http://www.gnupg.org/faq/weak-digest-algos.html for more information
-gpg: no ultimately trusted keys found
-(Reading database ... 10886 files and directories currently installed.)
-Preparing to replace tzdata 2011n-2 (using .../tzdata_2012b-1_all.deb) ...
-Unpacking replacement tzdata ...
-Setting up tzdata (2012b-1) ...
-
-Current default time zone: 'Etc/UTC'
-Local time is now: Wed Mar 7 04:14:18 UTC 2012.
-Universal Time is now: Wed Mar 7 04:14:18 UTC 2012.
-Run 'dpkg-reconfigure tzdata' if you wish to change it.
-
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
@@ -72,14 +36,14 @@ Run 'dpkg-reconfigure tzdata' if you wish to change it.
Local sources
─────────────
-r-bioc-limma_3.10.3-1.dsc exists in .; copying to chroot
+r-bioc-limma_3.12.0~dfsg-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Fkbw6u/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-EyGAmY/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -95,7 +59,7 @@ sbuild-build-depends-core-dummy is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-Q9901d/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-ekvL9T/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
OK
Reading package lists...
@@ -130,10 +94,10 @@ Suggested packages:
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
texi2html tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
- x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
- libx11-protocol-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
+ libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
+ x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
@@ -148,137 +112,150 @@ The following NEW packages will be installed:
r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
-Need to get 38.4 MB/58.4 MB of archives.
-After this operation, 126 MB of additional disk space will be used.
+Need to get 42.6 MB/58.9 MB of archives.
+After this operation, 128 MB of additional disk space will be used.
Get:1 http://ftp.jp.debian.org/debian/ sid/main libpipeline1 amd64 1.2.1-1 [39.2 kB]
-Get:2 http://ftp.jp.debian.org/debian/ sid/main libmagic1 amd64 5.10-1 [248 kB]
-Get:3 http://ftp.jp.debian.org/debian/ sid/main fontconfig-config all 2.8.0-3.1 [219 kB]
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-Get:5 http://ftp.jp.debian.org/debian/ sid/main libpixman-1-0 amd64 0.24.4-1 [406 kB]
-Get:6 http://ftp.jp.debian.org/debian/ sid/main libxcb1 amd64 1.8-2 [49.7 kB]
-Get:7 http://ftp.jp.debian.org/debian/ sid/main libxcb-render0 amd64 1.8-2 [18.3 kB]
-Get:8 http://ftp.jp.debian.org/debian/ sid/main libxcb-shm0 amd64 1.8-2 [10.0 kB]
-Get:9 http://ftp.jp.debian.org/debian/ sid/main libcairo2 amd64 1.10.2-7 [933 kB]
-Get:10 http://ftp.jp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.30.2-6 [1846 kB]
-Get:11 http://ftp.jp.debian.org/debian/ sid/main libxml2 amd64 2.7.8.dfsg-7 [895 kB]
-Get:12 http://ftp.jp.debian.org/debian/ sid/main libcroco3 amd64 0.6.4-2 [150 kB]
-Get:13 http://ftp.jp.debian.org/debian/ sid/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
-Get:14 http://ftp.jp.debian.org/debian/ sid/main libgfortran3 amd64 4.6.3-1 [358 kB]
-Get:15 http://ftp.jp.debian.org/debian/ sid/main x11-common all 1:7.6+12 [283 kB]
-Get:16 http://ftp.jp.debian.org/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
-Get:17 http://ftp.jp.debian.org/debian/ sid/main libthai-data all 0.1.17-1 [205 kB]
-Get:18 http://ftp.jp.debian.org/debian/ sid/main libthai0 amd64 0.1.17-1 [44.8 kB]
-Get:19 http://ftp.jp.debian.org/debian/ sid/main fontconfig amd64 2.8.0-3.1 [335 kB]
-Get:20 http://ftp.jp.debian.org/debian/ sid/main libtiff4 amd64 3.9.6-1 [199 kB]
-Get:21 http://ftp.jp.debian.org/debian/ sid/main man-db amd64 2.6.1-1 [1057 kB]
-Get:22 http://ftp.jp.debian.org/debian/ sid/main file amd64 5.10-1 [53.0 kB]
-Get:23 http://ftp.jp.debian.org/debian/ sid/main cdbs all 0.4.105 [78.7 kB]
-Get:24 http://ftp.jp.debian.org/debian/ sid/main debhelper all 9.20120115 [693 kB]
-Get:25 http://ftp.jp.debian.org/debian/ sid/main dpatch all 2.0.35 [95.2 kB]
-Get:26 http://ftp.jp.debian.org/debian/ sid/main gfortran-4.6 amd64 4.6.3-1 [5564 kB]
-Get:27 http://ftp.jp.debian.org/debian/ sid/main gfortran amd64 4:4.6.2-4 [1130 B]
-Get:28 http://ftp.jp.debian.org/debian/ sid/main libbz2-dev amd64 1.0.6-1 [32.1 kB]
-Get:29 http://ftp.jp.debian.org/debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
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-Get:33 http://ftp.jp.debian.org/debian/ sid/main libreadline-dev amd64 6.2-8 [890 B]
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-Get:36 http://ftp.jp.debian.org/debian/ sid/main tk8.5 amd64 8.5.11-1 [1183 kB]
-Get:37 http://ftp.jp.debian.org/debian/ sid/main r-base-core amd64 2.14.2-1 [20.2 MB]
-Get:38 http://ftp.jp.debian.org/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
+Get:2 http://ftp.jp.debian.org/debian/ sid/main libmagic1 amd64 5.11-1 [250 kB]
+Get:3 http://ftp.jp.debian.org/debian/ sid/main libpcre3 amd64 1:8.30-4 [242 kB]
+Get:4 http://ftp.jp.debian.org/debian/ sid/main libexpat1 amd64 2.1.0-1 [141 kB]
+Get:5 http://ftp.jp.debian.org/debian/ sid/main libfreetype6 amd64 2.4.9-1 [450 kB]
+Get:6 http://ftp.jp.debian.org/debian/ sid/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:7 http://ftp.jp.debian.org/debian/ sid/main libfontconfig1 amd64 2.8.0-3.1 [283 kB]
+Get:8 http://ftp.jp.debian.org/debian/ sid/main libpixman-1-0 amd64 0.24.4-1 [406 kB]
+Get:9 http://ftp.jp.debian.org/debian/ sid/main libxau6 amd64 1:1.0.7-1 [18.8 kB]
+Get:10 http://ftp.jp.debian.org/debian/ sid/main libxcb1 amd64 1.8.1-1 [50.0 kB]
+Get:11 http://ftp.jp.debian.org/debian/ sid/main libxcb-render0 amd64 1.8.1-1 [18.4 kB]
+Get:12 http://ftp.jp.debian.org/debian/ sid/main libxcb-shm0 amd64 1.8.1-1 [10.1 kB]
+Get:13 http://ftp.jp.debian.org/debian/ sid/main libcairo2 amd64 1.12.0-2 [896 kB]
+Get:14 http://ftp.jp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.32.0-4 [2054 kB]
+Get:15 http://ftp.jp.debian.org/debian/ sid/main libxml2 amd64 2.7.8.dfsg-7 [895 kB]
+Get:16 http://ftp.jp.debian.org/debian/ sid/main libcroco3 amd64 0.6.5-1 [151 kB]
+Get:17 http://ftp.jp.debian.org/debian/ sid/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
+Get:18 http://ftp.jp.debian.org/debian/ sid/main libgfortran3 amd64 4.7.0-3 [352 kB]
+Get:19 http://ftp.jp.debian.org/debian/ sid/main x11-common all 1:7.6+12 [283 kB]
+Get:20 http://ftp.jp.debian.org/debian/ sid/main libice6 amd64 2:1.0.8-2 [63.1 kB]
+Get:21 http://ftp.jp.debian.org/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
+Get:22 http://ftp.jp.debian.org/debian/ sid/main libthai-data all 0.1.17-1 [205 kB]
+Get:23 http://ftp.jp.debian.org/debian/ sid/main libthai0 amd64 0.1.17-1 [44.8 kB]
+Get:24 http://ftp.jp.debian.org/debian/ sid/main fontconfig amd64 2.8.0-3.1 [335 kB]
+Get:25 http://ftp.jp.debian.org/debian/ sid/main libpango1.0-0 amd64 1.30.0-1 [461 kB]
+Get:26 http://ftp.jp.debian.org/debian/ sid/main libpcrecpp0 amd64 1:8.30-4 [125 kB]
+Get:27 http://ftp.jp.debian.org/debian/ sid/main libsm6 amd64 2:1.2.1-2 [34.2 kB]
+Get:28 http://ftp.jp.debian.org/debian/ sid/main libtiff4 amd64 3.9.6-2 [200 kB]
+Get:29 http://ftp.jp.debian.org/debian/ sid/main groff-base amd64 1.21-7 [1151 kB]
+Get:30 http://ftp.jp.debian.org/debian/ sid/main man-db amd64 2.6.1-2 [1057 kB]
+Get:31 http://ftp.jp.debian.org/debian/ sid/main file amd64 5.11-1 [53.2 kB]
+Get:32 http://ftp.jp.debian.org/debian/ sid/main cdbs all 0.4.109 [79.4 kB]
+Get:33 http://ftp.jp.debian.org/debian/ sid/main debhelper all 9.20120410 [694 kB]
+Get:34 http://ftp.jp.debian.org/debian/ sid/main dpatch all 2.0.35 [95.2 kB]
+Get:35 http://ftp.jp.debian.org/debian/ sid/main gfortran-4.6 amd64 4.6.3-3 [5565 kB]
+Get:36 http://ftp.jp.debian.org/debian/ sid/main gfortran amd64 4:4.6.3-4 [1134 B]
+Get:37 http://ftp.jp.debian.org/debian/ sid/main libbz2-dev amd64 1.0.6-1 [32.1 kB]
+Get:38 http://ftp.jp.debian.org/debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
+Get:39 http://ftp.jp.debian.org/debian/ sid/main libtinfo-dev amd64 5.9-6 [103 kB]
+Get:40 http://ftp.jp.debian.org/debian/ sid/main libncurses5-dev amd64 5.9-6 [406 kB]
+Get:41 http://ftp.jp.debian.org/debian/ sid/main libpcre3-dev amd64 1:8.30-4 [348 kB]
+Get:42 http://ftp.jp.debian.org/debian/ sid/main zlib1g-dev amd64 1:1.2.6.dfsg-2 [213 kB]
+Get:43 http://ftp.jp.debian.org/debian/ sid/main libpng12-dev amd64 1.2.49-1 [266 kB]
+Get:44 http://ftp.jp.debian.org/debian/ sid/main libreadline6-dev amd64 6.2-8 [264 kB]
+Get:45 http://ftp.jp.debian.org/debian/ sid/main libreadline-dev amd64 6.2-8 [890 B]
+Get:46 http://ftp.jp.debian.org/debian/ sid/main unzip amd64 6.0-6 [194 kB]
+Get:47 http://ftp.jp.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:48 http://ftp.jp.debian.org/debian/ sid/main tcl8.5 amd64 8.5.11-1 [1633 kB]
+Get:49 http://ftp.jp.debian.org/debian/ sid/main tk8.5 amd64 8.5.11-1 [1183 kB]
+Get:50 http://ftp.jp.debian.org/debian/ sid/main r-base-core amd64 2.15.0-1 [20.5 MB]
+Get:51 http://ftp.jp.debian.org/debian/ sid/main r-base-dev all 2.15.0-1 [3900 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 38.4 MB in 5s (7003 kB/s)
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10889 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.10-1_amd64.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_amd64.deb) ...
-Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_amd64.deb) ...
+Fetched 42.6 MB in 14s (3012 kB/s)
+Selecting previously unselected package libpipeline1:amd64.
+(Reading database ... 10946 files and directories currently installed.)
+Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ...
+Selecting previously unselected package libmagic1:amd64.
+Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ...
+Selecting previously unselected package libpcre3:amd64.
+Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-4_amd64.deb) ...
+Selecting previously unselected package libexpat1:amd64.
+Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ...
+Selecting previously unselected package libfreetype6:amd64.
+Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1_amd64.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
-Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_amd64.deb) ...
-Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_amd64.deb) ...
-Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_amd64.deb) ...
-Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_amd64.deb) ...
-Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.8-2_amd64.deb) ...
+Selecting previously unselected package libfontconfig1:amd64.
+Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.8.0-3.1_amd64.deb) ...
+Selecting previously unselected package libpixman-1-0:amd64.
+Unpacking libpixman-1-0:amd64 (from .../libpixman-1-0_0.24.4-1_amd64.deb) ...
+Selecting previously unselected package libxau6:amd64.
+Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ...
+Selecting previously unselected package libxdmcp6:amd64.
+Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.0-4_amd64.deb) ...
+Selecting previously unselected package libxcb1:amd64.
+Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-1_amd64.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
-Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_amd64.deb) ...
-Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_amd64.deb) ...
-Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_amd64.deb) ...
-Selecting previously unselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_amd64.deb) ...
-Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-7_amd64.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_amd64.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_amd64.deb) ...
+Selecting previously unselected package libx11-6:amd64.
+Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.4.4-4_amd64.deb) ...
+Selecting previously unselected package libxcb-render0:amd64.
+Unpacking libxcb-render0:amd64 (from .../libxcb-render0_1.8.1-1_amd64.deb) ...
+Selecting previously unselected package libxcb-shm0:amd64.
+Unpacking libxcb-shm0:amd64 (from .../libxcb-shm0_1.8.1-1_amd64.deb) ...
+Selecting previously unselected package libxrender1:amd64.
+Unpacking libxrender1:amd64 (from .../libxrender1_1%3a0.9.6-2_amd64.deb) ...
+Selecting previously unselected package libcairo2:amd64.
+Unpacking libcairo2:amd64 (from .../libcairo2_1.12.0-2_amd64.deb) ...
+Selecting previously unselected package libffi5:amd64.
+Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ...
+Selecting previously unselected package libglib2.0-0:amd64.
+Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.32.0-4_amd64.deb) ...
Selecting previously unselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_amd64.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.4-2_amd64.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_amd64.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_amd64.deb) ...
+Selecting previously unselected package libcroco3:amd64.
+Unpacking libcroco3:amd64 (from .../libcroco3_0.6.5-1_amd64.deb) ...
+Selecting previously unselected package libdatrie1:amd64.
+Unpacking libdatrie1:amd64 (from .../libdatrie1_0.2.5-3_amd64.deb) ...
+Selecting previously unselected package libgfortran3:amd64.
+Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.0-3_amd64.deb) ...
Selecting previously unselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_amd64.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8d-1_amd64.deb) ...
+Selecting previously unselected package libice6:amd64.
+Unpacking libice6:amd64 (from .../libice6_2%3a1.0.8-2_amd64.deb) ...
+Selecting previously unselected package libjpeg8:amd64.
+Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1_amd64.deb) ...
Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
-Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.17-1_amd64.deb) ...
-Selecting previously unselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-3_amd64.deb) ...
+Selecting previously unselected package libthai0:amd64.
+Unpacking libthai0:amd64 (from .../libthai0_0.1.17-1_amd64.deb) ...
+Selecting previously unselected package libxft2:amd64.
+Unpacking libxft2:amd64 (from .../libxft2_2.2.0-3_amd64.deb) ...
Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_amd64.deb) ...
-Selecting previously unselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_amd64.deb) ...
-Selecting previously unselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_amd64.deb) ...
-Selecting previously unselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_amd64.deb) ...
-Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.6-1_amd64.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ...
-Selecting previously unselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_amd64.deb) ...
-Selecting previously unselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_amd64.deb) ...
-Selecting previously unselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
+Selecting previously unselected package libpango1.0-0:amd64.
+Unpacking libpango1.0-0:amd64 (from .../libpango1.0-0_1.30.0-1_amd64.deb) ...
+Selecting previously unselected package libpcrecpp0:amd64.
+Unpacking libpcrecpp0:amd64 (from .../libpcrecpp0_1%3a8.30-4_amd64.deb) ...
+Selecting previously unselected package libsm6:amd64.
+Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ...
+Selecting previously unselected package libtiff4:amd64.
+Unpacking libtiff4:amd64 (from .../libtiff4_3.9.6-2_amd64.deb) ...
+Selecting previously unselected package libunistring0:amd64.
+Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ...
+Selecting previously unselected package libxext6:amd64.
+Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.0-3_amd64.deb) ...
+Selecting previously unselected package libxss1:amd64.
+Unpacking libxss1:amd64 (from .../libxss1_1%3a1.2.1-2_amd64.deb) ...
+Selecting previously unselected package libxt6:amd64.
+Unpacking libxt6:amd64 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-7_amd64.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-1_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-2_amd64.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.10-1_amd64.deb) ...
+Unpacking file (from .../archives/file_5.11-1_amd64.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
Selecting previously unselected package gettext.
@@ -288,47 +265,47 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120410_all.deb) ...
Selecting previously unselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-3_amd64.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_amd64.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_amd64.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_amd64.deb) ...
-Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_amd64.deb) ...
-Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_amd64.deb) ...
+Selecting previously unselected package libbz2-dev:amd64.
+Unpacking libbz2-dev:amd64 (from .../libbz2-dev_1.0.6-1_amd64.deb) ...
+Selecting previously unselected package libjpeg8-dev:amd64.
+Unpacking libjpeg8-dev:amd64 (from .../libjpeg8-dev_8d-1_amd64.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_amd64.deb) ...
Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_amd64.deb) ...
-Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_amd64.deb) ...
+Selecting previously unselected package libtinfo-dev:amd64.
+Unpacking libtinfo-dev:amd64 (from .../libtinfo-dev_5.9-6_amd64.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-6_amd64.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_amd64.deb) ...
-Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-4_amd64.deb) ...
+Selecting previously unselected package zlib1g-dev:amd64.
+Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_amd64.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_amd64.deb) ...
-Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_amd64.deb) ...
-Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_amd64.deb) ...
+Selecting previously unselected package libreadline6-dev:amd64.
+Unpacking libreadline6-dev:amd64 (from .../libreadline6-dev_6.2-8_amd64.deb) ...
+Selecting previously unselected package libreadline-dev:amd64.
+Unpacking libreadline-dev:amd64 (from .../libreadline-dev_6.2-8_amd64.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_amd64.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-5_amd64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-6_amd64.deb) ...
Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
@@ -336,103 +313,103 @@ Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_amd64.deb) ...
Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.11-1_amd64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.2-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.15.0-1_amd64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-limma-dummy.
Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libmagic1 (5.10-1) ...
-Setting up libpcre3 (8.12-4) ...
-Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.8-1) ...
+Setting up libpipeline1:amd64 (1.2.1-1) ...
+Setting up libmagic1:amd64 (5.11-1) ...
+Setting up libpcre3:amd64 (1:8.30-4) ...
+Setting up libexpat1:amd64 (2.1.0-1) ...
+Setting up libfreetype6:amd64 (2.4.9-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1 (2.8.0-3.1) ...
-Setting up libpixman-1-0 (0.24.4-1) ...
-Setting up libxau6 (1:1.0.6-4) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.8-2) ...
+Setting up libfontconfig1:amd64 (2.8.0-3.1) ...
+Setting up libpixman-1-0:amd64 (0.24.4-1) ...
+Setting up libxau6:amd64 (1:1.0.7-1) ...
+Setting up libxdmcp6:amd64 (1:1.1.0-4) ...
+Setting up libxcb1:amd64 (1.8.1-1) ...
Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.8-2) ...
-Setting up libxcb-shm0 (1.8-2) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-7) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.30.2-6) ...
+Setting up libx11-6:amd64 (2:1.4.4-4) ...
+Setting up libxcb-render0:amd64 (1.8.1-1) ...
+Setting up libxcb-shm0:amd64 (1.8.1-1) ...
+Setting up libxrender1:amd64 (1:0.9.6-2) ...
+Setting up libcairo2:amd64 (1.12.0-2) ...
+Setting up libffi5:amd64 (3.0.10-3) ...
+Setting up libglib2.0-0:amd64 (2.32.0-4) ...
No schema files found: doing nothing.
Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3 (0.6.4-2) ...
-Setting up libdatrie1 (0.2.5-3) ...
-Setting up libgfortran3 (4.6.3-1) ...
+Setting up libcroco3:amd64 (0.6.5-1) ...
+Setting up libdatrie1:amd64 (0.2.5-3) ...
+Setting up libgfortran3:amd64 (4.7.0-3) ...
Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-2) ...
-Setting up libjpeg8 (8d-1) ...
+Setting up libice6:amd64 (2:1.0.8-2) ...
+Setting up libjpeg8:amd64 (8d-1) ...
Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0 (0.1.17-1) ...
-Setting up libxft2 (2.2.0-3) ...
+Setting up libthai0:amd64 (0.1.17-1) ...
+Setting up libxft2:amd64 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.29.4-2) ...
-Setting up libpcrecpp0 (8.12-4) ...
-Setting up libsm6 (2:1.2.0-2) ...
-Setting up libtiff4 (3.9.6-1) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libxext6 (2:1.3.0-3) ...
-Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.1-1) ...
+Setting up libpango1.0-0:amd64 (1.30.0-1) ...
+Setting up libpcrecpp0:amd64 (1:8.30-4) ...
+Setting up libsm6:amd64 (2:1.2.1-2) ...
+Setting up libtiff4:amd64 (3.9.6-2) ...
+Setting up libunistring0:amd64 (0.9.3-5) ...
+Setting up libxext6:amd64 (2:1.3.0-3) ...
+Setting up libxss1:amd64 (1:1.2.1-2) ...
+Setting up libxt6:amd64 (1:1.1.1-2) ...
+Setting up groff-base (1.21-7) ...
+Setting up man-db (2.6.1-2) ...
Building database of manual pages ...
-Setting up file (5.10-1) ...
+Setting up file (5.11-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.105) ...
+Setting up cdbs (0.4.109) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120115) ...
+Setting up debhelper (9.20120410) ...
Setting up dpatch (2.0.35) ...
-Setting up gfortran-4.6 (4.6.3-1) ...
-Setting up gfortran (4:4.6.2-4) ...
+Setting up gfortran-4.6 (4.6.3-3) ...
+Setting up gfortran (4:4.6.3-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8d-1) ...
+Setting up libbz2-dev:amd64 (1.0.6-1) ...
+Setting up libjpeg8-dev:amd64 (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-4) ...
-Setting up libncurses5-dev (5.9-4) ...
+Setting up libtinfo-dev:amd64 (5.9-6) ...
+Setting up libncurses5-dev (5.9-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.47-1) ...
-Setting up libreadline6-dev (6.2-8) ...
-Setting up libreadline-dev (6.2-8) ...
+Setting up libpcre3-dev (1:8.30-4) ...
+Setting up zlib1g-dev:amd64 (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.49-1) ...
+Setting up libreadline6-dev:amd64 (6.2-8) ...
+Setting up libreadline-dev:amd64 (6.2-8) ...
Setting up zip (3.0-4) ...
-Setting up unzip (6.0-5) ...
+Setting up unzip (6.0-6) ...
Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.2-1) ...
+Setting up r-base-core (2.15.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.2-1) ...
+Setting up r-base-dev (2.15.0-1) ...
Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -440,8 +417,8 @@ Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.9-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-3 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libpod-plainer-perl_1.03-1 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.9-1 login_1:4.1.5-1 lsb-base_3.2+Debian30 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.14-1
+Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.3-4 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libgpm2_1.20.4-4 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libpod-plainer-perl_1.03-1 libquadmath0_4.7.0-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-2 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.14-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -451,10 +428,10 @@ Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 bin
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.10.3-1.dsc)
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.3
-dpkg-source: info: unpacking r-bioc-limma_3.10.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.10.3-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-limma_3.12.0~dfsg-1.dsc)
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
Check disc space
────────────────
@@ -471,7 +448,7 @@ SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-706ea2f9-44a2-4b0f-937a-f6bd486fc7a0
+SCHROOT_SESSION_ID=sid-amd64-sbuild-b38d27c1-20f1-4265-900b-a1e78d65d190
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
@@ -483,9 +460,9 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.10.3-1
+dpkg-buildpackage: source version 3.12.0~dfsg-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-limma-3.10.3
+ dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -524,12 +501,12 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-limma-3.10.3
+ dpkg-source -b r-bioc-limma-3.12.0~dfsg
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.10.3.orig.tar.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.10.3-1.diff.gz
-dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.10.3-1.dsc
+dpkg-source: info: building r-bioc-limma using existing r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: info: building r-bioc-limma in r-bioc-limma_3.12.0~dfsg-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -562,7 +539,7 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library --clean \
@@ -574,7 +551,7 @@ if test -f /usr/bin/xvfb-run; then \
* installing *source* package 'limma' ...
** libs
make[1]: Entering directory `/«PKGBUILDDIR»/src'
-gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
@@ -587,8 +564,8 @@ installing to /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/
** preparing package for lazy loading
** help
*** installing help indices
-** building package indices ...
-*** tangling vignette sources ...
+** building package indices
+** installing vignettes
'limma.Rnw'
** testing if installed package can be loaded
@@ -663,18 +640,18 @@ dh_gencontrol -pr-bioc-limma
chmod 644 debian/r-bioc-limma/DEBIAN/control
chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
- (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.3-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-limma_3.10.3-1_amd64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_amd64.deb'.
+ dpkg-genchanges >../r-bioc-limma_3.12.0~dfsg-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-limma-3.10.3
+ dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120307-1314
+Build finished at 20120412-1143
Finished
────────
@@ -686,15 +663,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.3-1_amd64.changes:
-────────────────────────────────────
+r-bioc-limma_3.12.0~dfsg-1_amd64.changes:
+─────────────────────────────────────────
Format: 1.8
-Date: Wed, 07 Mar 2012 13:13:47 +0900
+Date: Thu, 12 Apr 2012 11:40:40 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: source amd64
-Version: 3.10.3-1
+Version: 3.12.0~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -702,53 +679,48 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.10.3-1) unstable; urgency=low
- .
- 0ddb00d New Upstream version.
- .
- [ Carlos Borroto ]
- afe6f31 Fix for watch file.
+ r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing.
- 4713d97 Obtain ${R:Depends} through r-base-dev.
- 756a1da Conforms to Policy 3.9.3.
- 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream.
- 2db0d3d Verbose Debhelper.
+ 2d3420e Imported Upstream version 3.12.0~dfsg
+ 4bbb8e4 Document LIMMA's copyright as a whole.
+ .
+ [ Andreas Tille ]
+ 8a61a4c Obtain references from inst/CITATION
Checksums-Sha1:
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- 2f3b66b4aa556abb79dda96fe7c7f2924ed315df 972612 r-bioc-limma_3.10.3.orig.tar.gz
- e6c12bac2f123e2538b27dbf01f04b7f29cdb363 2738 r-bioc-limma_3.10.3-1.diff.gz
- 1d22764e4372f52d34d41665804d3d8154598f6d 1472744 r-bioc-limma_3.10.3-1_amd64.deb
+ 64775e0adcabc9c801d736cdc10ad4bcee541ece 1144 r-bioc-limma_3.12.0~dfsg-1.dsc
+ b8557dac54643997e17913245385b2ab6cac8c01 282812 r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ 3a36aa2745e375bcf3bee1f0be18e10da0f19fd7 3098 r-bioc-limma_3.12.0~dfsg-1.diff.gz
+ 450a6c80a4b087db813f841637d54bc6434f7277 805696 r-bioc-limma_3.12.0~dfsg-1_amd64.deb
Checksums-Sha256:
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- 0431260bbd510a856218fc2a8b0181e83c48dc8a9089f2519f47c19d57bb1c55 972612 r-bioc-limma_3.10.3.orig.tar.gz
- 1b60bcf1a2e1fc2c8c8a68c6da0aeb7d05154b512f93a465b0e7ca3c214fb2da 2738 r-bioc-limma_3.10.3-1.diff.gz
- ea008699e4e0524d96a27d27a94258bc53d046218328bd6ec74f459bc5fd2175 1472744 r-bioc-limma_3.10.3-1_amd64.deb
+ 688f48deeb8f190d82a076e507ec2eb46c28aa003237b868d3712166976877b2 1144 r-bioc-limma_3.12.0~dfsg-1.dsc
+ b6d1b2ea73dcee00092c5b2df553a76206be26220813cbdac06287fbd5294500 282812 r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ 48c92c920e283293764dba120553efa4efb8c00be5704fc22ec4842e7a69d41a 3098 r-bioc-limma_3.12.0~dfsg-1.diff.gz
+ cce5635f18fe8f51070d4caf586ee50827bd0e2da161565d05f12c06a0b38acf 805696 r-bioc-limma_3.12.0~dfsg-1_amd64.deb
Files:
- 61f760bb88827467598c5f32571fd220 1109 gnu-r optional r-bioc-limma_3.10.3-1.dsc
- e0ede45f23425f0e5ac4beb66c2d3b2f 972612 gnu-r optional r-bioc-limma_3.10.3.orig.tar.gz
- fc332d5247809d91edfb76b64878ac66 2738 gnu-r optional r-bioc-limma_3.10.3-1.diff.gz
- c2f75d3913c43191b3561d63a9ab5003 1472744 gnu-r optional r-bioc-limma_3.10.3-1_amd64.deb
+ 76b16efeda073f7bf91449003f43499e 1144 gnu-r optional r-bioc-limma_3.12.0~dfsg-1.dsc
+ e257693c72260d1ca3eb8602c442642e 282812 gnu-r optional r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ a465d356326fb766d6f5cf6501ae4744 3098 gnu-r optional r-bioc-limma_3.12.0~dfsg-1.diff.gz
+ 690f9c13fe136bd849b136ce088134f8 805696 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.10.3-1_amd64.deb
-───────────────────────────────
+r-bioc-limma_3.12.0~dfsg-1_amd64.deb
+────────────────────────────────────
new debian package, version 2.0.
- size 1472744 bytes: control archive= 1572 bytes.
- 771 bytes, 16 lines control
- 2372 bytes, 31 lines md5sums
+ size 805696 bytes: control archive= 1546 bytes.
+ 775 bytes, 16 lines control
+ 2290 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.10.3-1
+ Version: 3.12.0~dfsg-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1677
- Depends: libc6 (>= 2.2.5), r-base-core (>= 2.14.2-1)
+ Installed-Size: 981
+ Depends: libc6 (>= 2.2.5), r-base-core (>= 2.15.0-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -760,52 +732,51 @@ r-bioc-limma_3.10.3-1_amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 198240 2012-03-07 13:14 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3772 2012-03-07 13:14 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 383 2012-03-07 13:14 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 454589 2012-03-07 13:14 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6221 2012-03-07 13:14 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3259 2012-03-07 13:14 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2392 2012-03-07 13:14 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1301 2012-03-07 13:14 ./usr/lib/R/site-library/limma/help/paths.rds
--rwxr-xr-x root/root 1230 2012-03-07 13:14 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1901 2012-03-07 13:14 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34556 2012-03-07 13:14 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2012-03-07 13:14 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 6022 2012-03-07 13:14 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5603 2012-03-07 13:14 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 518 2012-03-07 13:14 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2886 2012-03-07 13:14 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 216 2012-03-07 13:14 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1051 2012-03-07 13:14 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 2173 2012-03-07 13:14 ./usr/lib/R/site-library/limma/NEWS.Rd
--rw-r--r-- root/root 966 2012-03-07 13:14 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10904 2012-03-07 13:14 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9458 2012-03-07 13:14 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2012-03-07 13:14 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2012-03-07 13:14 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 89361 2012-03-07 13:14 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2012-03-07 13:14 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 737677 2012-03-07 13:14 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/share/
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 27284 2012-03-03 11:22 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2302 2012-03-07 13:14 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 560 2012-03-07 13:14 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 264 2012-03-07 13:14 ./usr/share/doc/r-bioc-limma/README.Debian
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 202031 2012-04-12 11:43 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3821 2012-04-12 11:43 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 383 2012-04-12 11:43 ./usr/lib/R/site-library/limma/R/limma
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 468540 2012-04-12 11:43 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6317 2012-04-12 11:43 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3346 2012-04-12 11:43 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2431 2012-04-12 11:43 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1362 2012-04-12 11:43 ./usr/lib/R/site-library/limma/help/paths.rds
+-rwxr-xr-x root/root 1230 2012-04-12 11:43 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 1901 2012-04-12 11:43 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 35015 2012-04-12 11:43 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2012-04-12 11:43 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 6157 2012-04-12 11:43 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5727 2012-04-12 11:43 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 521 2012-04-12 11:43 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 2943 2012-04-12 11:43 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 220 2012-04-12 11:43 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1054 2012-04-12 11:43 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 3989 2012-04-12 11:43 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 966 2012-04-12 11:43 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10904 2012-04-12 11:43 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 9754 2012-04-12 11:43 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2012-04-12 11:43 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 42743 2012-04-12 11:43 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 91993 2012-04-12 11:43 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2012-04-12 11:43 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/share/
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-04-12 11:43 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 27996 2012-03-31 07:32 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2457 2012-04-12 11:42 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 683 2012-04-12 11:42 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 264 2012-04-12 11:42 ./usr/share/doc/r-bioc-limma/README.Debian
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -816,8 +787,6 @@ drwxr-xr-x root/root 0 2012-03-07 13:14 ./usr/share/doc/r-bioc-limma/
lintian
───────
-Subroutine IO::Socket::INET6::sockaddr_in6 redefined at /usr/share/perl/5.14/Exporter.pm line 67.
- at /usr/share/perl5/IO/Socket/INET6.pm line 21
I: r-bioc-limma source: missing-debian-source-format
W: r-bioc-limma: copyright-without-copyright-notice
W: r-bioc-limma: executable-not-elf-or-script usr/lib/R/site-library/limma/doc/index.html
@@ -839,18 +808,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 6256
-Build-Time: 9
+Build-Space: 3528
+Build-Time: 10
Distribution: unstable
-Install-Time: 14
-Job: r-bioc-limma_3.10.3-1.dsc
+Install-Time: 26
+Job: r-bioc-limma_3.12.0~dfsg-1.dsc
Lintian: pass
Package: r-bioc-limma
-Package-Time: 29
-Source-Version: 3.10.3-1
-Space: 6256
+Package-Time: 38
+Source-Version: 3.12.0~dfsg-1
+Space: 3528
Status: successful
-Version: 3.10.3-1
+Version: 3.12.0~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120307-1314
-Build needed 00:00:29, 6256k disc space
+Finished at 20120412-1143
+Build needed 00:00:38, 3528k disc space
diff --git a/dsc b/dsc
index 42ef63c..3157310 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 1.0
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: any
-Version: 3.10.3-1
+Version: 3.12.0~dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
@@ -17,29 +17,29 @@ Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
Package-List:
r-bioc-limma deb gnu-r optional
Checksums-Sha1:
- 2f3b66b4aa556abb79dda96fe7c7f2924ed315df 972612 r-bioc-limma_3.10.3.orig.tar.gz
- e6c12bac2f123e2538b27dbf01f04b7f29cdb363 2738 r-bioc-limma_3.10.3-1.diff.gz
+ b8557dac54643997e17913245385b2ab6cac8c01 282812 r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ 3a36aa2745e375bcf3bee1f0be18e10da0f19fd7 3098 r-bioc-limma_3.12.0~dfsg-1.diff.gz
Checksums-Sha256:
- 0431260bbd510a856218fc2a8b0181e83c48dc8a9089f2519f47c19d57bb1c55 972612 r-bioc-limma_3.10.3.orig.tar.gz
- 1b60bcf1a2e1fc2c8c8a68c6da0aeb7d05154b512f93a465b0e7ca3c214fb2da 2738 r-bioc-limma_3.10.3-1.diff.gz
+ b6d1b2ea73dcee00092c5b2df553a76206be26220813cbdac06287fbd5294500 282812 r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ 48c92c920e283293764dba120553efa4efb8c00be5704fc22ec4842e7a69d41a 3098 r-bioc-limma_3.12.0~dfsg-1.diff.gz
Files:
- e0ede45f23425f0e5ac4beb66c2d3b2f 972612 r-bioc-limma_3.10.3.orig.tar.gz
- fc332d5247809d91edfb76b64878ac66 2738 r-bioc-limma_3.10.3-1.diff.gz
+ e257693c72260d1ca3eb8602c442642e 282812 r-bioc-limma_3.12.0~dfsg.orig.tar.gz
+ a465d356326fb766d6f5cf6501ae4744 3098 r-bioc-limma_3.12.0~dfsg-1.diff.gz
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diff --git a/upload b/upload
index f899608..ca589d2 100644
--- a/upload
+++ b/upload
@@ -1,6 +1,6 @@
-u r-bioc-limma_3.10.3-1.dsc ftp.upload.debian.org Wed Mar 7 13:23:27 2012
-u r-bioc-limma_3.10.3.orig.tar.gz ftp.upload.debian.org Wed Mar 7 13:23:31 2012
-u r-bioc-limma_3.10.3-1.diff.gz ftp.upload.debian.org Wed Mar 7 13:23:32 2012
-u r-bioc-limma_3.10.3-1_amd64.deb ftp.upload.debian.org Wed Mar 7 13:23:35 2012
-u r-bioc-limma_3.10.3-1_amd64.changes ftp.upload.debian.org Wed Mar 7 13:23:36 2012
-s r-bioc-limma_3.10.3-1_amd64.changes ftp.upload.debian.org Wed Mar 7 13:23:36 2012
+u r-bioc-limma_3.12.0~dfsg.orig.tar.gz ftp.upload.debian.org Thu Apr 12 11:45:48 2012
+u r-bioc-limma_3.12.0~dfsg-1.dsc ftp.upload.debian.org Thu Apr 12 11:45:50 2012
+u r-bioc-limma_3.12.0~dfsg-1.diff.gz ftp.upload.debian.org Thu Apr 12 11:45:51 2012
+u r-bioc-limma_3.12.0~dfsg-1_amd64.deb ftp.upload.debian.org Thu Apr 12 11:45:54 2012
+u r-bioc-limma_3.12.0~dfsg-1_amd64.changes ftp.upload.debian.org Thu Apr 12 11:45:55 2012
+s r-bioc-limma_3.12.0~dfsg-1_amd64.changes ftp.upload.debian.org Thu Apr 12 11:45:55 2012
--
linear models for microarray data
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