[med-svn] [SCM] cufflinks branch, master, updated. debian/1.3.0-1-8-g36e7d88

[Charles Plessy]

The following commit has been merged in the master branch:
commit fd9adb0d4d4a9e490039aef1db2f60bfd50ff386
Author: Charles Plessy <plessy at debian.org>
Date:   Wed May 9 08:18:44 2012 +0900

    Attempt to summarise the license as a whole.

diff --git a/debian/copyright b/debian/copyright
index 586448c..a89c379 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,6 +1,17 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Contact: tophat.cufflinks at gmail.com.
 Source: http://cufflinks.cbcb.umd.edu/downloads/cufflinks-1.3.0.tar.gz
+License: non-free
+ Most of the source code of Cufflinks is under the Boost Software License
+ version 1.0, with the exception of M4 macros under permissive licenses, and
+ ‘locfit’, which contains an unfortunate non-free clause restricting benchmarks.
+ .
+ After compilation (in May 2012), Cufflinks was linked to Boost (BSL-1.0), the
+ GNU libc (mostly LGPL-2.1+), the GNU libgcc and libstdc++ (GPL-3+ with version
+ 3.1 of the GCC Runtime Library Exception), and the zlib (permissive license).
+ .
+ The python script cuffmerge is also under the BSL-1.0, and can be executed
+ with Python without third-party libraries.
 Disclamer: This package is not part of the Debian operating system.
  The cufflinks source and binary Debian packages are part of the “non-free” area
  in our archive. The packages in this area are not part of the Debian system,

-- 
Transcript assembly, differential expression, and differential regulation for RNA-Seq.