[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.0-beta5-22-gf8cec87

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit f8cec87fd958ee813ab2b127b099da4f233e30bf
Merge: 7814d8dd094102bcd80c5dd0ef3e5254b48f70c8 98900480623909d99a6eb707422d84033401b320
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Fri May 11 08:41:50 2012 +0200

    Merge tag 'upstream/2.0.0-beta6'
    
    Upstream version 2.0.0-beta6
    
    Updated debian/changelog

diff --combined debian/changelog
index 3b3c416,0000000..4ecd78b
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,26 -1,0 +1,33 @@@
++bowtie2 (2.0.0-beta6-1) UNRELEASED; urgency=low
++
++  * updated debian/watch and get-orig-source to track -source suffix
++  * Imported Upstream version 2.0.0-beta6
++
++ -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Fri, 11 May 2012 08:41:59 +0200
++
 +bowtie2 (2.0.0-beta5-2) unstable; urgency=low
 +
 +  [ Alexandre Mestiashvili ]
 +  * file sse_util.h has missing copyright header. 
 +    The Author (Benjamin Langmead) has
 +    confirmed that the file is distributed under GPL3 license.
 +
 +  [ Andreas Tille ]
 +  * debian/upstream: Added publication
 +  * debian/patches/fix_makefile_machine_detection.patch + debian/rules:
 +    prevent -mXX and -msse2 switches for non Intel architectures
 +
 +  [ Alexandre Mestiashvili ]
 +  * debian/patches/bowtie2_gcc4.7.patch Closes: #672090
 +  * updated DEP3 headers
 +  * bumperd Standards-Version to 3.9.3
 +  * uname -m doesn't detect 32 bit chroot env - updated patcH
 +
 + -- Andreas Tille <tille at debian.org>  Thu, 26 Apr 2012 13:59:54 +0200
 +
 +bowtie2 (2.0.0-beta5-1) unstable; urgency=low
 +
 +  [ Alexandre Mestiashvili ]
 +  * Initial release (Closes: #660762)
 +
 + -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Wed, 22 Feb 2012 11:03:03 +0100

-- 
ultrafast memory-efficient short read aligner