[med-svn] r12507 - trunk/packages/babraham/fastqc/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-11-07 14:04:43 +0000 (Wed, 07 Nov 2012)
New Revision: 12507

Added:
   trunk/packages/babraham/fastqc/trunk/debian/manifest
Modified:
   trunk/packages/babraham/fastqc/trunk/debian/control
   trunk/packages/babraham/fastqc/trunk/debian/rules
Log:
Make use of javahelper trying to fix a CLASSPATH issue ... but failed (more on mailing list)


Modified: trunk/packages/babraham/fastqc/trunk/debian/control
===================================================================
--- trunk/packages/babraham/fastqc/trunk/debian/control	2012-11-07 14:03:32 UTC (rev 12506)
+++ trunk/packages/babraham/fastqc/trunk/debian/control	2012-11-07 14:04:43 UTC (rev 12507)
@@ -4,7 +4,7 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 9), default-jdk, libsam-java, libjbzip2-java
+Build-Depends: debhelper (>= 9), javahelper, default-jdk, libsam-java, libjbzip2-java
 Standards-Version: 3.9.4
 Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
 Vcs-Svn: http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/
@@ -12,7 +12,7 @@
 
 Package: fastqc
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends}, libsam-java
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends}, libsam-java, libjbzip2-java
 Description: quality control for high throughput sequence data
  FastQC aims to provide a simple way to do some quality control checks on
  raw sequence data coming from high throughput sequencing pipelines. It

Added: trunk/packages/babraham/fastqc/trunk/debian/manifest
===================================================================
--- trunk/packages/babraham/fastqc/trunk/debian/manifest	                        (rev 0)
+++ trunk/packages/babraham/fastqc/trunk/debian/manifest	2012-11-07 14:04:43 UTC (rev 12507)
@@ -0,0 +1,3 @@
+/usr/share/fastqc/fastqc.jar:
+ Main-Class: uk.ac.babraham.FastQC.FastQCApplication
+ Class-Path: /usr/share/java/jbzip2.jar /usr/share/java/sam.jar

Modified: trunk/packages/babraham/fastqc/trunk/debian/rules
===================================================================
--- trunk/packages/babraham/fastqc/trunk/debian/rules	2012-11-07 14:03:32 UTC (rev 12506)
+++ trunk/packages/babraham/fastqc/trunk/debian/rules	2012-11-07 14:04:43 UTC (rev 12507)
@@ -4,7 +4,7 @@
 #export DH_VERBOSE=1
 
 %:
-	dh $@ 
+	dh $@ --with javahelper
 
 get-orig-source:
 	mkdir -p ../tarballs