[med-svn] samtools annotated tag 0.1.6 created (now ad03c9a)

[Charles Plessy]

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plessy pushed a change to annotated tag 0.1.6
in repository samtools.

        at  ad03c9a   (tag)
   tagging  0746c10643c92a4e8c7dc9663b2cc0c63249e683 (commit)
  replaces  0.1.5c
 tagged by  On behalf of Heng Li
        on  Thu Sep 3 11:49:19 2009 +0100

- Log -----------------------------------------------------------------
Samtools 0.1.6, including ChangeLog.old but missing samtools.txt
compared to the canonical release tarball.  ChangeLog.old was omitted
from the tarball as released; samtools.txt (generated from samtools.1)
was included in the tarball but was never under version control.

Heng Li (51):
      * samtools-0.1.5-1 (r390)
      * samtools-0.1.5-2 (r391)
      Remove the warning in tview
      * samtools-0.1.5-3 (r393)
      * samtools-0.1.5-4 (r394)
      * samtools-0.1.5-5 (r395)
      * move bam_lite.c to bam-lite
      * samtools-0.1.5-6 (r402)
      * samtools-0.1.5-7 (r403)
      * samtools-0.1.5-8 (r404)
      * samtools-0.1.5-9 (r405)
      Sorry. The old Makefile is for PDCurses...
      * samtools-0.1.5-10 (r407)
      * samtools-0.1.5-11 (r408)
      do not include knetfile.h when _USE_KNETFILE is not defined
      Implemented Boyer-Moore search in the kstring library.
      fixed a compiling error (thank Ken for fixing it)
      * samtools-0.1.5-12 (r415)
      * samtools-0.1.5-17 (r416)
      * samtools-0.1.5-14 (r417)
      skip @header lines in SAM
      * samtools-0.1.5-15 (r419)
      do not set "read 1" if reads are not mapped in the PE mode of maq
      * samtools-0.1.5-16 (r421)
      * samtools-0.1.5-17 (r422)
      convert BLAT psl to SAM.
      * samtools-0.1.5-18 (r423)
      compatible with Windows binary files
      * samtools-0.1.5-19 (r426)
      * samtools-0.1.5-20 (r427)
      simplify MinGW Makefile
      * samtools-0.1.5-21 (r428)
      add comments
      replace the GnuWin32 version of libz.a with my own build with MinGW.
      * samtools-0.1.5-22 (r432)
      * tried to fixed the buggy FTP random access in Windows. FAILED.
      * samtools-0.1.5-23 (r434)
      * samtools-0.1.5-24 (r435)
      fixed two minor bugs (suggested by Tim M Storm)
      fixed a SERIOUS bug in setting 0x20 flag
      * samtools-0.1.5-25 (r436)
      * samtools-0.1.5-26 (r442)
      * samtools-0.1.5-27 (r443)
      * samtools-0.1.5-28 (r444)
      *
      * samtools-0.1.5-30 (r447)
      * samtools-0.1.5-31 (r448)
      * samtools-0.1.5-32 (r449)
      * samtools-0.1.5-33 (r450)
      * samtools-0.1.5-34 (r451)
      Release samtools-0.1.6

On behalf of Bob Handsaker (1):
      Change copyright notices now that MIT has approved open source distribution.

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No new revisions were added by this update.

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