[med-svn] samtools annotated tag 0.1.7 created (now 8529921)

[Charles Plessy]

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plessy pushed a change to annotated tag 0.1.7
in repository samtools.

        at  8529921   (tag)
   tagging  67b0f11adc184ffdf2ba3818c75fdb3990245409 (commit)
  replaces  0.1.6
 tagged by  On behalf of Heng Li
        on  Tue Nov 10 15:56:50 2009 +0000

- Log -----------------------------------------------------------------
Samtools 0.1.7, as per old Sourceforge svn tag (revision 511)
(the original canonical release tarball is no longer available).

Heng Li (29):
      * samtools-0.1.6-2 (r457)
      * samtools-0.1.6-2 (r458)
      * samtools-0.1.6-4 (r459)
      fixed a formatting issue
      * samtools-0.1.6-5 (r462)
      * samtools-0.1.6-6 (r466)
      * samtools-0.1.6-7 (r468)
      * samtools-0.1.6-9 (r469)
      * samtools-0.1.6-9 (r470)
      Fixed minor bugs in novo2sam.pl (on behalf of Ken Chen and Colin Hercus)
      Clarify the meaning of a region like "chr2:1,000,000".
      Unfinished modification. Please do not use this revision...
      * samtools-0.1.6-11 (r477)
      * samtools-0.1.6-12 (r478)
      * samtools-0.1.6-13 (r479)
      added a small unitity to parse SRA XML files
      * samtools-0.1.6-14 (r480)
      * samtools-0.1.6-15 (r482)
      * samtools-0.1.6-16 (r483)
      * samtools-0.1.6-17 (r484)
      * This revision is SERIOUSLY BUGGY. Please NOT use it.
      * BUGGY VERSION. Please NOT use it.
      * BUGGY VERSION
      * BUGGY VERSION
      * samtools-0.1.6-18 (r493)
      * samtools-0.1.6-19 (r494)
      * samtools-0.1.6-21 (r508)
      * samtools-0.1.6-22 (r509)
      Release samtools-0.1.7 (r510)

On behalf of John Marshall (2):
      Return NULL from _razf_open() (and hence razf_open()/razf_open2())
      Suppress bgzf_check_EOF() messages when reading from a pipe, as there is

Petr Danecek (9):
      A bug fix, "samtools view" is now working again.
      Changed the mode for newly created files to 0666. This allows less strict permissions with umask properly set (e.g. 0002 vs. 0022).
      Bug fix - faidx on RAZF compressed files now working.
      Removed the offending knet_seek message.
      Added the sam2vcf.pl script.
      commit 56ae21c41704d35a30a642fb8a3ea9e39f6460b9
      commit d410ecbf60b5aed90ee20c6ba40637ca50241edd
      Now possible to merge multiple HeaderDict dictionaries
      Added sam_header_line_free call for sam_header_parse2

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No new revisions were added by this update.

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