[med-svn] samtools annotated tag 0.2.0-rc5 created (now 6319211)

[Charles Plessy]

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plessy pushed a change to annotated tag 0.2.0-rc5
in repository samtools.

        at  6319211   (tag)
   tagging  b140662dec40bf0f87ce34edf147fbf4cbc9f23d (commit)
  replaces  0.2.0-rc4
 tagged by  John Marshall
        on  Mon Nov 25 13:32:47 2013 +0000

- Log -----------------------------------------------------------------
Test release RC5

John Marshall (5):
      Reinstate bam_iter_read(iter=NULL) reading the whole file
      Fix CRLF-style line termination
      Free the outer struct last
      Merge branch master of git://github.com/leecbaker/samtools
      Use floor(x+0.5) instead of C99's round()

Lee Baker (2):
      Fix compilation with the Clang compiler.
      Fix type mismatches between types in sizeof() in malloc/calloc/realloc calls. This generates a warning in the clang analyzer, designed to catch incorrectly sized memory allocations.

Martin Pollard (2):
      Fix annoying memset warning and bug in md5.c
      Fix error in bam.h comment

Petr Danecek (4):
      mpileup: Fix SGB numerical underflow; Output correct samtools version on output
      mpileup: Added forgotten #include
      mpileup: Prevent under/overflow of the SGB annotation
      mpileup: Updated tests to reflect SGB change

-----------------------------------------------------------------------

This annotated tag includes the following new commits:

       new  51467d0   Fix compilation with the Clang compiler.
       new  4ce9296   Fix type mismatches between types in sizeof() in malloc/calloc/realloc calls. This generates a warning in the clang analyzer, designed to catch incorrectly sized memory allocations.
       new  d0ebd20   Free the outer struct last
       new  92a1cb3   Merge branch master of git://github.com/leecbaker/samtools
       new  b140662   Use floor(x+0.5) instead of C99's round()

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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