[med-svn] [htslib] branch debian/unstable updated (648c826 -> 53af783)

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a change to branch debian/unstable
in repository htslib.

      from  648c826   New upstream tag; updated changelog.
       new  fa1a13a   Updated Symbols file.
       new  d49f20e   faidx: Detect compressed BGZF fasta files and create .gzi index without asking to allow proper functioning of samtools faidx fasta.fa.gz
       new  0908d4c   synced_reader: Improved regions/targets to be faster with large number of sequences; More userfriendly regions_overlap() function
       new  5e770b3   vcf: bcf_update_format now sets the number of samples in VCF record which previously was responsibility of the user; Fix in bcf_itr_querys macro, non-existent bcf_name2id renamed to bcf_hdr_name2id
       new  32187cc   Merge branch 'develop' into debian/unstable
       new  53af783   Updated symbols again.

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile                   |   2 +-
 debian/libhts0.symbols     |   8 +-
 faidx.c                    |   2 +
 htslib/khash_str2int.h     |  98 +++++++++++++++++++
 htslib/synced_bcf_reader.h |  28 +++---
 htslib/vcf.h               |  18 ++--
 synced_bcf_reader.c        | 232 ++++++++++++++++++++++-----------------------
 test/test-vcf-api.c        |  14 ++-
 vcf.c                      |  19 ++--
 9 files changed, 262 insertions(+), 159 deletions(-)
 create mode 100644 htslib/khash_str2int.h

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