[med-svn] [tophat] branch master updated (b16c75d -> 862652c)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository tophat.

      from  b16c75d   s/UNRELEASED/unstable/
       new  e58d4d0   Imported Upstream version 2.0.10
       new  4f97f32   Merge tag 'upstream/2.0.10'
       new  051f66d   d/changelog: new upstrem version
       new  862652c   d/docs: no need in NEWS as it is outdated - tophat versions 0.7-1.0 d/control: bump Standards-Version d/changelog: s/UNRELEASED/unstable/

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README                      |    2 +
 THANKS                      |   36 ++-
 configure                   |   24 +-
 configure.ac                |    2 +-
 debian/changelog            |    6 +
 debian/control              |    2 +-
 debian/docs                 |    1 -
 src/common.cpp              |    4 +-
 src/common.h                |    4 +-
 src/long_spanning_reads.cpp |    6 +-
 src/prep_reads.cpp          |  140 ++++++++----
 src/reads.cpp               |  191 +++++++---------
 src/reads.h                 |  135 ++++++++---
 src/sam_juncs.cpp           |    2 -
 src/segment_juncs.cpp       |   38 +---
 src/tophat-fusion-post      |    7 +-
 src/tophat.py               |  114 +++++-----
 src/tophat_reports.cpp      |  528 ++++++++++++++++++++++++-------------------
 18 files changed, 701 insertions(+), 541 deletions(-)

-- 
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