[med-svn] [tophat] 02/04: Merge tag 'upstream/2.0.10'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository tophat.

commit 4f97f32ae139480bb4658bf88b45acad964154ce
Merge: b16c75d e58d4d0
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Nov 21 09:45:23 2013 +0100

    Merge tag 'upstream/2.0.10'
    
    Upstream version 2.0.10

 README                      |    2 +
 THANKS                      |   36 ++-
 configure                   |   24 +-
 configure.ac                |    2 +-
 src/common.cpp              |    4 +-
 src/common.h                |    4 +-
 src/long_spanning_reads.cpp |    6 +-
 src/prep_reads.cpp          |  140 ++++++++----
 src/reads.cpp               |  191 +++++++---------
 src/reads.h                 |  135 ++++++++---
 src/sam_juncs.cpp           |    2 -
 src/segment_juncs.cpp       |   38 +---
 src/tophat-fusion-post      |    7 +-
 src/tophat.py               |  114 +++++-----
 src/tophat_reports.cpp      |  528 ++++++++++++++++++++++++-------------------
 15 files changed, 694 insertions(+), 539 deletions(-)

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