[med-svn] r15055 - in trunk/packages/R/r-bioc-makecdfenv/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2013-10-30 07:13:33 +0000 (Wed, 30 Oct 2013)
New Revision: 15055

Added:
   trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/
   trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/series
   trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/use_debian_packaged_zlib.patch
Modified:
   trunk/packages/R/r-bioc-makecdfenv/trunk/debian/control
Log:
Use Debian packaged zlib


Modified: trunk/packages/R/r-bioc-makecdfenv/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-makecdfenv/trunk/debian/control	2013-10-30 06:59:31 UTC (rev 15054)
+++ trunk/packages/R/r-bioc-makecdfenv/trunk/debian/control	2013-10-30 07:13:33 UTC (rev 15055)
@@ -15,7 +15,7 @@
 Homepage: http://bioconductor.org/packages/release/bioc/html/makecdfenv.html
 
 Package: r-bioc-makecdfenv
-Architecture: all
+Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
          r-bioc-biobase,

Added: trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/series	2013-10-30 07:13:33 UTC (rev 15055)
@@ -0,0 +1 @@
+use_debian_packaged_zlib.patch

Added: trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/use_debian_packaged_zlib.patch	                        (rev 0)
+++ trunk/packages/R/r-bioc-makecdfenv/trunk/debian/patches/use_debian_packaged_zlib.patch	2013-10-30 07:13:33 UTC (rev 15055)
@@ -0,0 +1,27 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Fri, 23 Aug 2013 12:11:49 +0200
+Description: If the systems includes zlib natively there is no point in
+ requiring the import of zlibbioc
+
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -8,7 +8,7 @@ Author: Rafael A. Irizarry <rafa at jhu.edu
+         <bmb at bmbolstad.com>
+ Maintainer: James W. MacDonald <jmacdon at med.umich.edu>
+ Depends: R (>= 2.6.0), methods, affyio
+-Imports: Biobase, affy, methods, stats, utils, zlibbioc
++Imports: Biobase, affy, methods, stats, utils
+ Description: This package has two functions. One reads a Affymetrix
+         chip description file (CDF) and creates a hash table
+         environment containing the location/probe set membership
+--- a/NAMESPACE
++++ b/NAMESPACE
+@@ -2,8 +2,6 @@ useDynLib(makecdfenv)
+ 
+ import(methods)
+ 
+-import(zlibbioc)
+-
+ importFrom(affy, cleancdfname)
+ 
+ importFrom(Biobase, createPackage, multiassign)